data_9JD4 # _model_server_result.job_id czX3Gr1YQajwW1Poi0oJ3A _model_server_result.datetime_utc '2025-07-20 20:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 9JD4 # _exptl.entry_id 9JD4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 114.229 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JD4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 162 A CYS 162 1_555 A SG CYS 171 A CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 190 A ASN 190 1_555 M C1 NAG . A NAG 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.528 ? metalc ? metalc1 A O GLY 56 A GLY 56 1_555 K NA NA . A NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc2 A O PHE 58 A PHE 58 1_555 L NA NA . A NA 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc3 A O VAL 59 A VAL 59 1_555 K NA NA . A NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc4 A O SER 301 A SER 301 1_555 L NA NA . A NA 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc5 B O ABU . A ABU 701 1_555 L NA NA . A NA 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 336 n n C1 H11 OCT sing 337 n n C1 H12 OCT sing 338 n n C1 H13 OCT sing 339 n n C2 C3 OCT sing 340 n n C2 H21 OCT sing 341 n n C2 H22 OCT sing 342 n n C3 C4 OCT sing 343 n n C3 H31 OCT sing 344 n n C3 H32 OCT sing 345 n n C4 C5 OCT sing 346 n n C4 H41 OCT sing 347 n n C4 H42 OCT sing 348 n n C5 C6 OCT sing 349 n n C5 H51 OCT sing 350 n n C5 H52 OCT sing 351 n n C6 C7 OCT sing 352 n n C6 H61 OCT sing 353 n n C6 H62 OCT sing 354 n n C7 C8 OCT sing 355 n n C7 H71 OCT sing 356 n n C7 H72 OCT sing 357 n n C8 H81 OCT sing 358 n n C8 H82 OCT sing 359 n n C8 H83 OCT sing 360 n n # _atom_sites.entry_id 9JD4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ABU A 1 701 601 ABU ABU . C 3 OCT A 1 702 602 OCT OCT . D 4 D12 A 1 703 603 D12 D12 . E 3 OCT A 1 704 604 OCT OCT . F 4 D12 A 1 705 605 D12 D12 . G 5 HEX A 1 706 606 HEX HEX . H 4 D12 A 1 707 607 D12 D12 . I 3 OCT A 1 708 608 OCT OCT . J 6 CL A 1 709 701 CL CL . K 7 NA A 1 710 702 NA NA . L 7 NA A 1 711 703 NA NA . M 8 NAG A 1 712 704 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . C 3 122.964 112.866 114.434 1 71.45 ? C1 OCT 702 A 1 HETATM 2 C C2 OCT . . . C 3 121.662 112.625 115.185 1 78.33 ? C2 OCT 702 A 1 HETATM 3 C C3 OCT . . . C 3 121.697 111.369 116.048 1 82.78 ? C3 OCT 702 A 1 HETATM 4 C C4 OCT . . . C 3 120.425 111.154 116.857 1 80.41 ? C4 OCT 702 A 1 HETATM 5 C C5 OCT . . . C 3 120.44 109.875 117.684 1 82.08 ? C5 OCT 702 A 1 HETATM 6 C C6 OCT . . . C 3 119.265 109.767 118.648 1 83.67 ? C6 OCT 702 A 1 HETATM 7 C C7 OCT . . . C 3 117.906 109.821 117.962 1 83.92 ? C7 OCT 702 A 1 HETATM 8 C C8 OCT . . . C 3 116.743 109.72 118.941 1 78.48 ? C8 OCT 702 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #