data_9JD9 # _model_server_result.job_id cEzF7huGzOe6oiSbGHNBxA _model_server_result.datetime_utc '2025-07-20 17:22:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":709}' # _entry.id 9JD9 # _exptl.entry_id 9JD9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 100.202 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEPTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JD9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 162 A CYS 162 1_555 A SG CYS 171 A CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 190 A ASN 190 1_555 T C1 NAG . A NAG 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? metalc ? metalc1 A O GLY 56 A GLY 56 1_555 S NA NA . A NA 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc2 A O PHE 58 A PHE 58 1_555 R NA NA . A NA 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc3 A O VAL 59 A VAL 59 1_555 S NA NA . A NA 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 A O SER 301 A SER 301 1_555 R NA NA . A NA 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 A OG SER 301 A SER 301 1_555 R NA NA . A NA 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc6 A O LEU 398 A LEU 398 1_555 S NA NA . A NA 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? metalc ? metalc7 B O2 TAU . A TAU 701 1_555 R NA NA . A NA 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? # _chem_comp.formula 'C7 H16' _chem_comp.formula_weight 100.202 _chem_comp.id HP6 _chem_comp.mon_nstd_flag . _chem_comp.name HEPTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 HP6 sing 310 n n C20 H201 HP6 sing 311 n n C20 H202 HP6 sing 312 n n C20 H203 HP6 sing 313 n n C21 C22 HP6 sing 314 n n C21 H211 HP6 sing 315 n n C21 H212 HP6 sing 316 n n C22 C23 HP6 sing 317 n n C22 H221 HP6 sing 318 n n C22 H222 HP6 sing 319 n n C23 C24 HP6 sing 320 n n C23 H231 HP6 sing 321 n n C23 H232 HP6 sing 322 n n C24 C25 HP6 sing 323 n n C24 H241 HP6 sing 324 n n C24 H242 HP6 sing 325 n n C25 C26 HP6 sing 326 n n C25 H251 HP6 sing 327 n n C25 H252 HP6 sing 328 n n C26 H261 HP6 sing 329 n n C26 H262 HP6 sing 330 n n C26 H263 HP6 sing 331 n n # _atom_sites.entry_id 9JD9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TAU A 1 701 601 TAU TAU . C 3 D12 A 1 702 602 D12 D12 . D 4 OCT A 1 703 603 OCT OCT . E 5 C14 A 1 704 604 C14 C14 . F 6 DD9 A 1 705 605 DD9 DD9 . G 7 HP6 A 1 706 606 HP6 HP6 . H 8 D10 A 1 707 607 D10 D10 . I 4 OCT A 1 708 608 OCT OCT . J 7 HP6 A 1 709 609 HP6 HP6 . K 3 D12 A 1 710 610 D12 D12 . L 4 OCT A 1 711 611 OCT OCT . M 4 OCT A 1 712 612 OCT OCT . N 8 D10 A 1 713 613 D10 D10 . O 3 D12 A 1 714 614 D12 D12 . P 9 HEX A 1 715 615 HEX HEX . Q 10 CL A 1 716 701 CL CL . R 11 NA A 1 717 702 NA NA . S 11 NA A 1 718 703 NA NA . T 12 NAG A 1 719 704 NAG NAG . U 13 HOH A 1 801 621 HOH HOH . U 13 HOH A 2 802 622 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 HP6 . . . J 7 129.217 123.183 144.611 1 78.24 ? C20 HP6 709 A 1 HETATM 2 C C21 HP6 . . . J 7 128.286 123.103 145.812 1 82.49 ? C21 HP6 709 A 1 HETATM 3 C C22 HP6 . . . J 7 128.988 123.438 147.12 1 85.17 ? C22 HP6 709 A 1 HETATM 4 C C23 HP6 . . . J 7 128.053 123.434 148.321 1 83.52 ? C23 HP6 709 A 1 HETATM 5 C C24 HP6 . . . J 7 128.683 124.013 149.58 1 85.41 ? C24 HP6 709 A 1 HETATM 6 C C25 HP6 . . . J 7 127.684 124.196 150.715 1 89.58 ? C25 HP6 709 A 1 HETATM 7 C C26 HP6 . . . J 7 128.25 125.01 151.871 1 86.35 ? C26 HP6 709 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #