data_9JDA # _model_server_result.job_id VE8mPXv8ud8dv2Akbd3jgQ _model_server_result.datetime_utc '2025-07-21 17:10:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":705}' # _entry.id 9JDA # _exptl.entry_id 9JDA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 114.229 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JDA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 162 A CYS 162 1_555 A SG CYS 171 A CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A O GLY 56 A GLY 56 1_555 I NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 A O PHE 58 A PHE 58 1_555 H NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A O VAL 59 A VAL 59 1_555 I NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc4 A O SER 301 A SER 301 1_555 H NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 A OG SER 301 A SER 301 1_555 H NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc6 A O LEU 398 A LEU 398 1_555 I NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc7 A OG SER 402 A SER 402 1_555 I NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc8 B O2 TAU . A TAU 701 1_555 H NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 303 n n C1 H11 OCT sing 304 n n C1 H12 OCT sing 305 n n C1 H13 OCT sing 306 n n C2 C3 OCT sing 307 n n C2 H21 OCT sing 308 n n C2 H22 OCT sing 309 n n C3 C4 OCT sing 310 n n C3 H31 OCT sing 311 n n C3 H32 OCT sing 312 n n C4 C5 OCT sing 313 n n C4 H41 OCT sing 314 n n C4 H42 OCT sing 315 n n C5 C6 OCT sing 316 n n C5 H51 OCT sing 317 n n C5 H52 OCT sing 318 n n C6 C7 OCT sing 319 n n C6 H61 OCT sing 320 n n C6 H62 OCT sing 321 n n C7 C8 OCT sing 322 n n C7 H71 OCT sing 323 n n C7 H72 OCT sing 324 n n C8 H81 OCT sing 325 n n C8 H82 OCT sing 326 n n C8 H83 OCT sing 327 n n # _atom_sites.entry_id 9JDA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TAU A 1 701 601 TAU TAU . C 3 OCT A 1 702 602 OCT OCT . D 4 D10 A 1 703 603 D10 D10 . E 5 D12 A 1 704 604 D12 D12 . F 3 OCT A 1 705 605 OCT OCT . G 6 CL A 1 706 701 CL CL . H 7 NA A 1 707 702 NA NA . I 7 NA A 1 708 703 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . F 3 124.814 140.442 135.311 1 55.75 ? C1 OCT 705 A 1 HETATM 2 C C2 OCT . . . F 3 123.589 141.087 135.943 1 56.17 ? C2 OCT 705 A 1 HETATM 3 C C3 OCT . . . F 3 122.326 140.256 135.766 1 54.04 ? C3 OCT 705 A 1 HETATM 4 C C4 OCT . . . F 3 121.059 141.017 136.122 1 57.16 ? C4 OCT 705 A 1 HETATM 5 C C5 OCT . . . F 3 120.178 140.315 137.147 1 51.21 ? C5 OCT 705 A 1 HETATM 6 C C6 OCT . . . F 3 119.176 141.264 137.788 1 55.85 ? C6 OCT 705 A 1 HETATM 7 C C7 OCT . . . F 3 118.138 140.576 138.662 1 48.97 ? C7 OCT 705 A 1 HETATM 8 C C8 OCT . . . F 3 117.148 141.565 139.261 1 47.95 ? C8 OCT 705 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 513 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #