data_9JDG # _model_server_result.job_id HS0qX_sVio_dBZsgD64MpA _model_server_result.datetime_utc '2025-07-22 02:02:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jdg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 9JDG # _exptl.entry_id 9JDG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 170.335 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JDG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 H N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 162 A CYS 162 1_555 A SG CYS 171 A CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 190 A ASN 190 1_555 P C1 NAG . A NAG 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.262 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 114 n n C1 H11 D12 sing 115 n n C1 H12 D12 sing 116 n n C1 H13 D12 sing 117 n n C2 C3 D12 sing 118 n n C2 H21 D12 sing 119 n n C2 H22 D12 sing 120 n n C3 C4 D12 sing 121 n n C3 H31 D12 sing 122 n n C3 H32 D12 sing 123 n n C4 C5 D12 sing 124 n n C4 H41 D12 sing 125 n n C4 H42 D12 sing 126 n n C5 C6 D12 sing 127 n n C5 H51 D12 sing 128 n n C5 H52 D12 sing 129 n n C6 C7 D12 sing 130 n n C6 H61 D12 sing 131 n n C6 H62 D12 sing 132 n n C7 C8 D12 sing 133 n n C7 H71 D12 sing 134 n n C7 H72 D12 sing 135 n n C8 C9 D12 sing 136 n n C8 H81 D12 sing 137 n n C8 H82 D12 sing 138 n n C9 C10 D12 sing 139 n n C9 H91 D12 sing 140 n n C9 H92 D12 sing 141 n n C10 C11 D12 sing 142 n n C10 H101 D12 sing 143 n n C10 H102 D12 sing 144 n n C11 C12 D12 sing 145 n n C11 H111 D12 sing 146 n n C11 H112 D12 sing 147 n n C12 H121 D12 sing 148 n n C12 H122 D12 sing 149 n n C12 H123 D12 sing 150 n n # _atom_sites.entry_id 9JDG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D12 A 1 701 630 D12 D12 . C 3 OCT A 1 702 631 OCT OCT . D 4 D10 A 1 703 632 D10 D10 . E 4 D10 A 1 704 633 D10 D10 . F 3 OCT A 1 705 634 OCT OCT . G 4 D10 A 1 706 635 D10 D10 . H 2 D12 A 1 707 636 D12 D12 . I 3 OCT A 1 708 637 OCT OCT . J 4 D10 A 1 709 638 D10 D10 . K 3 OCT A 1 710 639 OCT OCT . L 2 D12 A 1 711 640 D12 D12 . M 3 OCT A 1 712 641 OCT OCT . N 4 D10 A 1 713 642 D10 D10 . O 5 CL A 1 714 701 CL CL . P 6 NAG A 1 715 702 NAG NAG . Q 7 HOH A 1 801 603 HOH HOH . Q 7 HOH A 2 802 602 HOH HOH . Q 7 HOH A 3 803 601 HOH HOH . Q 7 HOH A 4 804 604 HOH HOH . Q 7 HOH A 5 805 606 HOH HOH . Q 7 HOH A 6 806 607 HOH HOH . Q 7 HOH A 7 807 608 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . B 2 113.95 140.073 147.608 1 69.55 ? C1 D12 701 A 1 HETATM 2 C C2 D12 . . . B 2 114.67 140.301 146.286 1 73.05 ? C2 D12 701 A 1 HETATM 3 C C3 D12 . . . B 2 116.187 140.316 146.432 1 71.51 ? C3 D12 701 A 1 HETATM 4 C C4 D12 . . . B 2 116.909 140.354 145.093 1 65.77 ? C4 D12 701 A 1 HETATM 5 C C5 D12 . . . B 2 118.427 140.315 145.203 1 67.27 ? C5 D12 701 A 1 HETATM 6 C C6 D12 . . . B 2 119.089 139.993 143.87 1 68.64 ? C6 D12 701 A 1 HETATM 7 C C7 D12 . . . B 2 120.578 140.304 143.839 1 69.21 ? C7 D12 701 A 1 HETATM 8 C C8 D12 . . . B 2 121.206 140.066 142.472 1 69.57 ? C8 D12 701 A 1 HETATM 9 C C9 D12 . . . B 2 122.685 140.424 142.422 1 67.57 ? C9 D12 701 A 1 HETATM 10 C C10 D12 . . . B 2 123.303 140.235 141.044 1 71.97 ? C10 D12 701 A 1 HETATM 11 C C11 D12 . . . B 2 124.682 140.868 140.91 1 71.89 ? C11 D12 701 A 1 HETATM 12 C C12 D12 . . . B 2 125.561 140.615 142.127 1 68.09 ? C12 D12 701 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 12 #