data_9JDG # _model_server_result.job_id 465W70mLcdfh53NBJX04JA _model_server_result.datetime_utc '2025-07-21 12:22:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jdg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":713}' # _entry.id 9JDG # _exptl.entry_id 9JDG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 142.282 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JDG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 G N N ? 4 J N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 162 A CYS 162 1_555 A SG CYS 171 A CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 190 A ASN 190 1_555 P C1 NAG . A NAG 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.262 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 83 n n C1 H11 D10 sing 84 n n C1 H12 D10 sing 85 n n C1 H13 D10 sing 86 n n C2 C3 D10 sing 87 n n C2 H21 D10 sing 88 n n C2 H22 D10 sing 89 n n C3 C4 D10 sing 90 n n C3 H31 D10 sing 91 n n C3 H32 D10 sing 92 n n C4 C5 D10 sing 93 n n C4 H41 D10 sing 94 n n C4 H42 D10 sing 95 n n C5 C6 D10 sing 96 n n C5 H51 D10 sing 97 n n C5 H52 D10 sing 98 n n C6 C7 D10 sing 99 n n C6 H61 D10 sing 100 n n C6 H62 D10 sing 101 n n C7 C8 D10 sing 102 n n C7 H71 D10 sing 103 n n C7 H72 D10 sing 104 n n C8 C9 D10 sing 105 n n C8 H81 D10 sing 106 n n C8 H82 D10 sing 107 n n C9 C10 D10 sing 108 n n C9 H91 D10 sing 109 n n C9 H92 D10 sing 110 n n C10 H101 D10 sing 111 n n C10 H102 D10 sing 112 n n C10 H103 D10 sing 113 n n # _atom_sites.entry_id 9JDG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D12 A 1 701 630 D12 D12 . C 3 OCT A 1 702 631 OCT OCT . D 4 D10 A 1 703 632 D10 D10 . E 4 D10 A 1 704 633 D10 D10 . F 3 OCT A 1 705 634 OCT OCT . G 4 D10 A 1 706 635 D10 D10 . H 2 D12 A 1 707 636 D12 D12 . I 3 OCT A 1 708 637 OCT OCT . J 4 D10 A 1 709 638 D10 D10 . K 3 OCT A 1 710 639 OCT OCT . L 2 D12 A 1 711 640 D12 D12 . M 3 OCT A 1 712 641 OCT OCT . N 4 D10 A 1 713 642 D10 D10 . O 5 CL A 1 714 701 CL CL . P 6 NAG A 1 715 702 NAG NAG . Q 7 HOH A 1 801 603 HOH HOH . Q 7 HOH A 2 802 602 HOH HOH . Q 7 HOH A 3 803 601 HOH HOH . Q 7 HOH A 4 804 604 HOH HOH . Q 7 HOH A 5 805 606 HOH HOH . Q 7 HOH A 6 806 607 HOH HOH . Q 7 HOH A 7 807 608 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . N 4 137.209 103.843 109.615 1 78.07 ? C1 D10 713 A 1 HETATM 2 C C2 D10 . . . N 4 135.753 103.773 110.048 1 80.58 ? C2 D10 713 A 1 HETATM 3 C C3 D10 . . . N 4 135.541 104.237 111.484 1 83.49 ? C3 D10 713 A 1 HETATM 4 C C4 D10 . . . N 4 134.157 103.906 112.028 1 82.24 ? C4 D10 713 A 1 HETATM 5 C C5 D10 . . . N 4 134.015 104.188 113.518 1 80.26 ? C5 D10 713 A 1 HETATM 6 C C6 D10 . . . N 4 132.77 103.571 114.139 1 81.59 ? C6 D10 713 A 1 HETATM 7 C C7 D10 . . . N 4 131.474 104.064 113.51 1 83.96 ? C7 D10 713 A 1 HETATM 8 C C8 D10 . . . N 4 130.975 105.381 114.089 1 81.7 ? C8 D10 713 A 1 HETATM 9 C C9 D10 . . . N 4 129.625 105.806 113.525 1 80.26 ? C9 D10 713 A 1 HETATM 10 C C10 D10 . . . N 4 129.001 106.96 114.296 1 79.71 ? C10 D10 713 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #