data_9JDZ # _model_server_result.job_id ue8MGVms_YaZqIWIk3ZjTA _model_server_result.datetime_utc '2025-07-30 12:45:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 9JDZ # _exptl.entry_id 9JDZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 404.281 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description lesinurad _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 49 A CYS 49 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 88 A CYS 88 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C17 H14 Br N3 O2 S' _chem_comp.formula_weight 404.281 _chem_comp.id A1AIL _chem_comp.mon_nstd_flag . _chem_comp.name lesinurad _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '{[(4M)-5-bromo-4-(4-cyclopropylnaphthalen-1-yl)-4H-1,2,4-triazol-3-yl]sulfanyl}acetic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 A1AIL doub 1 n y C10 C9 A1AIL sing 2 n y C11 C12 A1AIL sing 3 n y C21 S20 A1AIL sing 4 n n C21 C22 A1AIL sing 5 n n C9 C8 A1AIL doub 6 n y S20 C15 A1AIL sing 7 n n C12 C13 A1AIL doub 8 n y O23 C22 A1AIL doub 9 n n C15 N16 A1AIL doub 10 n y C15 N14 A1AIL sing 11 n y C22 O24 A1AIL sing 12 n n C8 C13 A1AIL sing 13 n y C8 C7 A1AIL sing 14 n y C1 C3 A1AIL sing 15 n n C1 C2 A1AIL sing 16 n n N16 N17 A1AIL sing 17 n y C13 C4 A1AIL sing 18 n y N14 C7 A1AIL sing 19 n n N14 C18 A1AIL sing 20 n y C7 C6 A1AIL doub 21 n y N17 C18 A1AIL doub 22 n y C18 BR19 A1AIL sing 23 n n C4 C3 A1AIL sing 24 n n C4 C5 A1AIL doub 25 n y C3 C2 A1AIL sing 26 n n C6 C5 A1AIL sing 27 n y C5 H1 A1AIL sing 28 n n C6 H2 A1AIL sing 29 n n C1 H3 A1AIL sing 30 n n C1 H4 A1AIL sing 31 n n C2 H5 A1AIL sing 32 n n C2 H6 A1AIL sing 33 n n C3 H7 A1AIL sing 34 n n C9 H8 A1AIL sing 35 n n C10 H9 A1AIL sing 36 n n C11 H10 A1AIL sing 37 n n C12 H11 A1AIL sing 38 n n C21 H12 A1AIL sing 39 n n C21 H13 A1AIL sing 40 n n O24 H14 A1AIL sing 41 n n # _atom_sites.entry_id 9JDZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AIL A 1 601 601 A1AIL LIG . C 3 HOH A 1 701 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1AIL . . . B 2 80.329 92.811 89.635 1 97.38 ? C4 A1AIL 601 A 1 HETATM 2 C C5 A1AIL . . . B 2 80.455 94.073 89.059 1 97.38 ? C5 A1AIL 601 A 1 HETATM 3 C C6 A1AIL . . . B 2 81.129 95.091 89.735 1 97.38 ? C6 A1AIL 601 A 1 HETATM 4 C C7 A1AIL . . . B 2 81.677 94.847 90.993 1 97.38 ? C7 A1AIL 601 A 1 HETATM 5 C C8 A1AIL . . . B 2 81.551 93.567 91.582 1 97.38 ? C8 A1AIL 601 A 1 HETATM 6 C C1 A1AIL . . . B 2 78.611 91.73 87.69 1 97.38 ? C1 A1AIL 601 A 1 HETATM 7 C C2 A1AIL . . . B 2 79.933 90.972 87.566 1 97.38 ? C2 A1AIL 601 A 1 HETATM 8 C C3 A1AIL . . . B 2 79.581 91.687 88.876 1 97.38 ? C3 A1AIL 601 A 1 HETATM 9 C C9 A1AIL . . . B 2 82.105 93.314 92.856 1 97.38 ? C9 A1AIL 601 A 1 HETATM 10 C C10 A1AIL . . . B 2 81.98 92.053 93.435 1 97.38 ? C10 A1AIL 601 A 1 HETATM 11 C C11 A1AIL . . . B 2 81.307 91.038 92.756 1 97.38 ? C11 A1AIL 601 A 1 HETATM 12 C C12 A1AIL . . . B 2 80.759 91.284 91.499 1 97.38 ? C12 A1AIL 601 A 1 HETATM 13 C C13 A1AIL . . . B 2 80.885 92.561 90.911 1 97.38 ? C13 A1AIL 601 A 1 HETATM 14 C C15 A1AIL . . . B 2 81.81 96.977 92.319 1 97.38 ? C15 A1AIL 601 A 1 HETATM 15 C C18 A1AIL . . . B 2 83.718 96.055 91.839 1 97.38 ? C18 A1AIL 601 A 1 HETATM 16 C C21 A1AIL . . . B 2 79.446 98.121 90.907 1 97.38 ? C21 A1AIL 601 A 1 HETATM 17 C C22 A1AIL . . . B 2 78.071 97.561 90.513 1 97.38 ? C22 A1AIL 601 A 1 HETATM 18 N N14 A1AIL . . . B 2 82.382 95.925 91.695 1 97.38 ? N14 A1AIL 601 A 1 HETATM 19 N N16 A1AIL . . . B 2 82.772 97.716 92.823 1 97.38 ? N16 A1AIL 601 A 1 HETATM 20 N N17 A1AIL . . . B 2 83.945 97.149 92.529 1 97.38 ? N17 A1AIL 601 A 1 HETATM 21 O O23 A1AIL . . . B 2 77.171 97.426 91.388 1 97.38 ? O23 A1AIL 601 A 1 HETATM 22 O O24 A1AIL . . . B 2 77.841 97.236 89.316 1 97.38 ? O24 A1AIL 601 A 1 HETATM 23 S S20 A1AIL . . . B 2 80.02 97.312 92.439 1 97.38 ? S20 A1AIL 601 A 1 HETATM 24 BR BR19 A1AIL . . . B 2 85.066 94.837 91.149 1 97.38 ? BR19 A1AIL 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #