data_9JEE
#
_model_server_result.job_id            SCwhShVKgivIXqx7mA9r_Q 
_model_server_result.datetime_utc      '2025-09-04 15:36:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9jee 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":802}' 
#
_entry.id    9JEE 
#
_exptl.entry_id    9JEE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9JEE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9JEE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 612 A CYS 612 1_555 A SG CYS 619 A CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 612 B CYS 612 1_555 B SG CYS 619 B CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 C SG CYS 612 C CYS 612 1_555 C SG CYS 619 C CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 D SG CYS 612 D CYS 612 1_555 D SG CYS 619 D CYS 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 284 n n 
N C13 POV sing 285 n n 
N C14 POV sing 286 n n 
N C15 POV sing 287 n n 
P O11 POV sing 288 n n 
P O12 POV sing 289 n n 
P O13 POV sing 290 n n 
P O14 POV doub 291 n n 
C1 C2 POV sing 292 n n 
C1 O11 POV sing 293 n n 
C1 H1 POV sing 294 n n 
C1 H1A POV sing 295 n n 
C2 C3 POV sing 296 n n 
C2 O21 POV sing 297 n n 
C2 H2 POV sing 298 n n 
C3 O31 POV sing 299 n n 
C3 H3 POV sing 300 n n 
C3 H3A POV sing 301 n n 
C210 C211 POV sing 302 n n 
C210 C29 POV doub 303 z n 
C210 H210 POV sing 304 n n 
C310 C311 POV sing 305 n n 
C310 C39 POV sing 306 n n 
C310 H310 POV sing 307 n n 
C310 H31A POV sing 308 n n 
C11 C12 POV sing 309 n n 
C11 O12 POV sing 310 n n 
C11 H11 POV sing 311 n n 
C11 H11A POV sing 312 n n 
C211 C212 POV sing 313 n n 
C211 H211 POV sing 314 n n 
C211 H21A POV sing 315 n n 
C311 C312 POV sing 316 n n 
C311 H311 POV sing 317 n n 
C311 H31B POV sing 318 n n 
C12 H12 POV sing 319 n n 
C12 H12A POV sing 320 n n 
C212 C213 POV sing 321 n n 
C212 H212 POV sing 322 n n 
C212 H21B POV sing 323 n n 
C312 C313 POV sing 324 n n 
C312 H312 POV sing 325 n n 
C312 H31C POV sing 326 n n 
C13 H13 POV sing 327 n n 
C13 H13A POV sing 328 n n 
C13 H13B POV sing 329 n n 
C213 C214 POV sing 330 n n 
C213 H213 POV sing 331 n n 
C213 H21C POV sing 332 n n 
C313 C314 POV sing 333 n n 
C313 H313 POV sing 334 n n 
C313 H31D POV sing 335 n n 
C14 H14 POV sing 336 n n 
C14 H14A POV sing 337 n n 
C14 H14B POV sing 338 n n 
C214 C215 POV sing 339 n n 
C214 H214 POV sing 340 n n 
C214 H21D POV sing 341 n n 
C314 C315 POV sing 342 n n 
C314 H314 POV sing 343 n n 
C314 H31E POV sing 344 n n 
C15 H15 POV sing 345 n n 
C15 H15A POV sing 346 n n 
C15 H15B POV sing 347 n n 
C215 C216 POV sing 348 n n 
C215 H215 POV sing 349 n n 
C215 H21E POV sing 350 n n 
C315 C316 POV sing 351 n n 
C315 H315 POV sing 352 n n 
C315 H31F POV sing 353 n n 
C216 C217 POV sing 354 n n 
C216 H216 POV sing 355 n n 
C216 H21F POV sing 356 n n 
C316 H316 POV sing 357 n n 
C316 H31G POV sing 358 n n 
C316 H31H POV sing 359 n n 
C217 C218 POV sing 360 n n 
C217 H217 POV sing 361 n n 
C217 H21G POV sing 362 n n 
C218 H218 POV sing 363 n n 
C218 H21H POV sing 364 n n 
C218 H21J POV sing 365 n n 
C21 O21 POV sing 366 n n 
C21 C22 POV sing 367 n n 
C21 O22 POV doub 368 n n 
C22 C23 POV sing 369 n n 
C22 H22 POV sing 370 n n 
C22 H22A POV sing 371 n n 
C23 C24 POV sing 372 n n 
C23 H23 POV sing 373 n n 
C23 H23A POV sing 374 n n 
C24 C25 POV sing 375 n n 
C24 H24 POV sing 376 n n 
C24 H24A POV sing 377 n n 
C25 C26 POV sing 378 n n 
C25 H25 POV sing 379 n n 
C25 H25A POV sing 380 n n 
C26 C27 POV sing 381 n n 
C26 H26 POV sing 382 n n 
C26 H26A POV sing 383 n n 
C27 C28 POV sing 384 n n 
C27 H27 POV sing 385 n n 
C27 H27A POV sing 386 n n 
C28 C29 POV sing 387 n n 
C28 H28 POV sing 388 n n 
C28 H28A POV sing 389 n n 
C29 H29 POV sing 390 n n 
C31 O31 POV sing 391 n n 
C31 C32 POV sing 392 n n 
C31 O32 POV doub 393 n n 
C32 C33 POV sing 394 n n 
C32 H32 POV sing 395 n n 
C32 H32A POV sing 396 n n 
C33 C34 POV sing 397 n n 
C33 H33 POV sing 398 n n 
C33 H33A POV sing 399 n n 
C34 C35 POV sing 400 n n 
C34 H34 POV sing 401 n n 
C34 H34A POV sing 402 n n 
C35 C36 POV sing 403 n n 
C35 H35 POV sing 404 n n 
C35 H35A POV sing 405 n n 
C36 C37 POV sing 406 n n 
C36 H36 POV sing 407 n n 
C36 H36A POV sing 408 n n 
C37 C38 POV sing 409 n n 
C37 H37 POV sing 410 n n 
C37 H37A POV sing 411 n n 
C38 C39 POV sing 412 n n 
C38 H38 POV sing 413 n n 
C38 H38A POV sing 414 n n 
C39 H39 POV sing 415 n n 
C39 H39A POV sing 416 n n 
#
_atom_sites.entry_id                     9JEE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV A 1 801 804 POV POV . 
F 2 POV A 1 802 805 POV POV . 
G 2 POV A 1 803 809 POV POV . 
H 3 GRQ A 1 804 810 GRQ LIG . 
I 2 POV A 1 805 802 POV POV . 
J 2 POV A 1 806 803 POV POV . 
K 2 POV B 1 801 803 POV POV . 
L 2 POV B 1 802 804 POV POV . 
M 2 POV B 1 803 805 POV POV . 
N 2 POV B 1 804 809 POV POV . 
O 3 GRQ B 1 805 810 GRQ LIG . 
P 2 POV B 1 806 802 POV POV . 
Q 2 POV C 1 801 803 POV POV . 
R 2 POV C 1 802 804 POV POV . 
S 2 POV C 1 803 805 POV POV . 
T 2 POV C 1 804 809 POV POV . 
U 3 GRQ C 1 805 810 GRQ LIG . 
V 2 POV C 1 806 802 POV POV . 
W 2 POV D 1 801 802 POV POV . 
X 2 POV D 1 802 803 POV POV . 
Y 2 POV D 1 803 804 POV POV . 
Z 2 POV D 1 804 805 POV POV . 
AA 2 POV D 1 805 809 POV POV . 
BA 3 GRQ D 1 806 810 GRQ LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . F 2 135.683 146.15 157.328 1 24.7 ? N POV 802 A 1 
HETATM 2 P P POV . . . F 2 140.197 144.404 158.986 0 24.7 ? P POV 802 A 1 
HETATM 3 C C1 POV . . . F 2 140.904 144.705 161.514 1 24.7 ? C1 POV 802 A 1 
HETATM 4 C C2 POV . . . F 2 140.546 145.822 162.502 1 24.7 ? C2 POV 802 A 1 
HETATM 5 C C3 POV . . . F 2 141.288 145.748 163.817 1 24.7 ? C3 POV 802 A 1 
HETATM 6 C C210 POV . . . F 2 136.29 144.503 168.681 1 24.7 ? C210 POV 802 A 1 
HETATM 7 C C11 POV . . . F 2 137.799 144.809 158 1 24.7 ? C11 POV 802 A 1 
HETATM 8 O O11 POV . . . F 2 140.883 145.232 160.206 0 24.7 ? O11 POV 802 A 1 
HETATM 9 C C12 POV . . . F 2 137.178 145.967 157.25 1 24.7 ? C12 POV 802 A 1 
HETATM 10 O O12 POV . . . F 2 138.754 145.219 158.95 1 24.7 ? O12 POV 802 A 1 
HETATM 11 C C13 POV . . . F 2 135.264 147.446 156.727 1 24.7 ? C13 POV 802 A 1 
HETATM 12 O O13 POV . . . F 2 140.96 144.747 157.742 1 24.7 ? O13 POV 802 A 1 
HETATM 13 C C14 POV . . . F 2 135.065 145.039 156.55 1 24.7 ? C14 POV 802 A 1 
HETATM 14 O O14 POV . . . F 2 139.942 142.981 159.369 1 24.7 ? O14 POV 802 A 1 
HETATM 15 C C15 POV . . . F 2 135.176 146.069 158.727 1 24.7 ? C15 POV 802 A 1 
HETATM 16 C C21 POV . . . F 2 138.287 146.274 161.91 1 24.7 ? C21 POV 802 A 1 
HETATM 17 O O21 POV . . . F 2 139.152 145.816 162.811 1 24.7 ? O21 POV 802 A 1 
HETATM 18 C C22 POV . . . F 2 137.039 145.435 161.881 1 24.7 ? C22 POV 802 A 1 
HETATM 19 O O22 POV . . . F 2 138.496 147.238 161.218 1 24.7 ? O22 POV 802 A 1 
HETATM 20 C C23 POV . . . F 2 136.148 145.587 163.102 1 24.7 ? C23 POV 802 A 1 
HETATM 21 C C24 POV . . . F 2 135.587 146.998 163.215 1 24.7 ? C24 POV 802 A 1 
HETATM 22 C C25 POV . . . F 2 134.399 147.098 164.163 1 24.7 ? C25 POV 802 A 1 
HETATM 23 C C26 POV . . . F 2 134.692 147.913 165.417 1 24.7 ? C26 POV 802 A 1 
HETATM 24 C C27 POV . . . F 2 135.707 147.257 166.345 1 24.7 ? C27 POV 802 A 1 
HETATM 25 C C28 POV . . . F 2 135.304 145.841 166.756 1 24.7 ? C28 POV 802 A 1 
HETATM 26 C C29 POV . . . F 2 136.389 145.142 167.515 1 24.7 ? C29 POV 802 A 1 
HETATM 27 C C31 POV . . . F 2 140.347 143.934 165.011 1 24.7 ? C31 POV 802 A 1 
HETATM 28 O O31 POV . . . F 2 141.337 144.396 164.257 1 24.7 ? O31 POV 802 A 1 
HETATM 29 C C32 POV . . . F 2 140.697 144.043 166.468 1 24.7 ? C32 POV 802 A 1 
HETATM 30 O O32 POV . . . F 2 139.318 143.488 164.566 1 24.7 ? O32 POV 802 A 1 
HETATM 31 C C33 POV . . . F 2 141.904 143.234 166.907 1 24.7 ? C33 POV 802 A 1 
HETATM 32 C C34 POV . . . F 2 141.489 141.844 167.37 1 24.7 ? C34 POV 802 A 1 
HETATM 33 C C35 POV . . . F 2 140.534 141.841 168.556 1 24.7 ? C35 POV 802 A 1 
HETATM 34 C C36 POV . . . F 2 141.138 142.497 169.792 1 24.7 ? C36 POV 802 A 1 
HETATM 35 C C37 POV . . . F 2 140.201 142.539 170.991 1 24.7 ? C37 POV 802 A 1 
HETATM 36 C C38 POV . . . F 2 140.853 143.153 172.224 1 24.7 ? C38 POV 802 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           372 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           36 
#