data_9JHE # _model_server_result.job_id c8-ENhhC-MtVpBDPlabuVw _model_server_result.datetime_utc '2024-11-17 11:37:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jhe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 9JHE # _exptl.entry_id 9JHE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.19 _cell.angle_gamma 90 _cell.entry_id 9JHE _cell.length_a 90.821 _cell.length_b 80.476 _cell.length_c 128.345 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 9JHE _atom_sites.fract_transf_matrix[1][1] 0.011011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002379 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAD A 1 301 303 NAD NAD . H 2 NAD B 1 301 302 NAD NAD . I 2 NAD C 1 301 304 NAD NAD . J 2 NAD D 1 301 305 NAD NAD . K 2 NAD E 1 301 302 NAD NAD . L 2 NAD F 1 301 301 NAD NAD . M 3 HOH A 1 401 34 HOH HOH . M 3 HOH A 2 402 42 HOH HOH . M 3 HOH A 3 403 15 HOH HOH . M 3 HOH A 4 404 79 HOH HOH . M 3 HOH A 5 405 73 HOH HOH . M 3 HOH A 6 406 65 HOH HOH . M 3 HOH A 7 407 69 HOH HOH . M 3 HOH A 8 408 19 HOH HOH . M 3 HOH A 9 409 64 HOH HOH . M 3 HOH A 10 410 49 HOH HOH . M 3 HOH A 11 411 77 HOH HOH . M 3 HOH A 12 412 55 HOH HOH . N 3 HOH B 1 401 63 HOH HOH . N 3 HOH B 2 402 38 HOH HOH . N 3 HOH B 3 403 20 HOH HOH . N 3 HOH B 4 404 22 HOH HOH . N 3 HOH B 5 405 10 HOH HOH . N 3 HOH B 6 406 59 HOH HOH . N 3 HOH B 7 407 17 HOH HOH . N 3 HOH B 8 408 58 HOH HOH . N 3 HOH B 9 409 46 HOH HOH . N 3 HOH B 10 410 72 HOH HOH . N 3 HOH B 11 411 75 HOH HOH . O 3 HOH C 1 401 3 HOH HOH . O 3 HOH C 2 402 28 HOH HOH . O 3 HOH C 3 403 36 HOH HOH . O 3 HOH C 4 404 51 HOH HOH . O 3 HOH C 5 405 8 HOH HOH . O 3 HOH C 6 406 35 HOH HOH . O 3 HOH C 7 407 26 HOH HOH . O 3 HOH C 8 408 21 HOH HOH . O 3 HOH C 9 409 71 HOH HOH . P 3 HOH D 1 401 6 HOH HOH . P 3 HOH D 2 402 45 HOH HOH . P 3 HOH D 3 403 54 HOH HOH . P 3 HOH D 4 404 23 HOH HOH . P 3 HOH D 5 405 57 HOH HOH . P 3 HOH D 6 406 68 HOH HOH . P 3 HOH D 7 407 41 HOH HOH . P 3 HOH D 8 408 25 HOH HOH . P 3 HOH D 9 409 37 HOH HOH . P 3 HOH D 10 410 14 HOH HOH . P 3 HOH D 11 411 30 HOH HOH . P 3 HOH D 12 412 18 HOH HOH . P 3 HOH D 13 413 12 HOH HOH . P 3 HOH D 14 414 7 HOH HOH . P 3 HOH D 15 415 47 HOH HOH . P 3 HOH D 16 416 50 HOH HOH . P 3 HOH D 17 417 27 HOH HOH . P 3 HOH D 18 418 44 HOH HOH . P 3 HOH D 19 419 52 HOH HOH . Q 3 HOH E 1 401 48 HOH HOH . Q 3 HOH E 2 402 76 HOH HOH . Q 3 HOH E 3 403 1 HOH HOH . Q 3 HOH E 4 404 29 HOH HOH . Q 3 HOH E 5 405 40 HOH HOH . Q 3 HOH E 6 406 13 HOH HOH . Q 3 HOH E 7 407 33 HOH HOH . Q 3 HOH E 8 408 66 HOH HOH . Q 3 HOH E 9 409 2 HOH HOH . Q 3 HOH E 10 410 67 HOH HOH . Q 3 HOH E 11 411 61 HOH HOH . Q 3 HOH E 12 412 16 HOH HOH . Q 3 HOH E 13 413 53 HOH HOH . Q 3 HOH E 14 414 9 HOH HOH . Q 3 HOH E 15 415 70 HOH HOH . Q 3 HOH E 16 416 24 HOH HOH . Q 3 HOH E 17 417 32 HOH HOH . R 3 HOH F 1 401 31 HOH HOH . R 3 HOH F 2 402 78 HOH HOH . R 3 HOH F 3 403 4 HOH HOH . R 3 HOH F 4 404 11 HOH HOH . R 3 HOH F 5 405 60 HOH HOH . R 3 HOH F 6 406 56 HOH HOH . R 3 HOH F 7 407 74 HOH HOH . R 3 HOH F 8 408 62 HOH HOH . R 3 HOH F 9 409 43 HOH HOH . R 3 HOH F 10 410 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 2 -29.505 51.02 77.554 1 73.48 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . G 2 -28.435 51.914 76.975 1 73.92 -1 O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . G 2 -30.271 50.342 76.437 1 71.34 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . G 2 -30.556 51.947 78.477 1 66.8 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . G 2 -30.147 53.251 78.852 1 66 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . G 2 -31.335 54.21 78.594 1 67.12 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . G 2 -31.475 55.035 79.602 1 62.33 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . G 2 -31.036 55.089 77.327 1 65.82 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . G 2 -32.082 55.056 76.491 1 67.72 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . G 2 -30.827 56.527 77.888 1 65.17 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . G 2 -31.288 57.553 76.889 1 67.1 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . G 2 -31.587 56.551 78.961 1 64 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . G 2 -31.129 57.543 79.906 1 62.55 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . G 2 -29.867 57.888 80.137 1 62.2 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . G 2 -29.824 58.826 81.062 1 61.73 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . G 2 -31.079 59.1 81.443 1 61.7 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . G 2 -31.664 59.967 82.353 1 58.16 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . G 2 -30.832 60.858 83.164 1 61.82 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . G 2 -32.96 59.994 82.493 1 64.48 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . G 2 -33.711 59.185 81.756 1 65.86 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . G 2 -33.218 58.35 80.888 1 59.67 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . G 2 -31.912 58.277 80.701 1 61.19 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . G 2 -28.814 49.872 78.518 1 68.59 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . G 2 -29.665 49.031 79.694 1 62.43 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . G 2 -29.371 47.56 79.565 1 63 -1 O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . G 2 -31.155 49.271 79.514 1 65.21 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . G 2 -29.188 49.569 81.221 1 68.02 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . G 2 -30.213 49.801 82.221 1 65.03 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . G 2 -29.567 49.616 83.665 1 60.67 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . G 2 -29.772 48.443 84.081 1 59.05 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . G 2 -27.998 49.805 83.594 1 64.6 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . G 2 -27.569 50.593 84.644 1 64.33 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . G 2 -27.452 48.432 83.733 1 64.27 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . G 2 -26.108 48.47 84.407 1 61.8 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . G 2 -28.338 47.826 84.501 1 65.26 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . G 2 -28.309 46.381 84.293 1 63.99 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . G 2 -28.469 46.013 82.841 1 62.78 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . G 2 -28.324 44.496 82.67 1 67.9 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . G 2 -28.556 44.133 81.195 1 61.77 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . G 2 -28.468 44.968 80.356 1 63.47 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . G 2 -28.891 42.73 80.827 1 54.97 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . G 2 -29.31 43.719 83.516 1 58.32 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . G 2 -29.38 44.166 84.96 1 54.95 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . G 2 -29.342 45.695 85.151 1 58.75 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #