data_9JHE
#
_model_server_result.job_id            q2-Hxe2usQ04vPwo2UEHPA 
_model_server_result.datetime_utc      '2024-11-17 11:41:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9jhe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":301}' 
#
_entry.id    9JHE 
#
_exptl.entry_id    9JHE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.19 
_cell.angle_gamma         90 
_cell.entry_id            9JHE 
_cell.length_a            90.821 
_cell.length_b            80.476 
_cell.length_c            128.345 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9JHE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     9JHE 
_atom_sites.fract_transf_matrix[1][1]    0.011011 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002379 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012426 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007971 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAD A 1 301 303 NAD NAD . 
H 2 NAD B 1 301 302 NAD NAD . 
I 2 NAD C 1 301 304 NAD NAD . 
J 2 NAD D 1 301 305 NAD NAD . 
K 2 NAD E 1 301 302 NAD NAD . 
L 2 NAD F 1 301 301 NAD NAD . 
M 3 HOH A 1 401 34 HOH HOH . 
M 3 HOH A 2 402 42 HOH HOH . 
M 3 HOH A 3 403 15 HOH HOH . 
M 3 HOH A 4 404 79 HOH HOH . 
M 3 HOH A 5 405 73 HOH HOH . 
M 3 HOH A 6 406 65 HOH HOH . 
M 3 HOH A 7 407 69 HOH HOH . 
M 3 HOH A 8 408 19 HOH HOH . 
M 3 HOH A 9 409 64 HOH HOH . 
M 3 HOH A 10 410 49 HOH HOH . 
M 3 HOH A 11 411 77 HOH HOH . 
M 3 HOH A 12 412 55 HOH HOH . 
N 3 HOH B 1 401 63 HOH HOH . 
N 3 HOH B 2 402 38 HOH HOH . 
N 3 HOH B 3 403 20 HOH HOH . 
N 3 HOH B 4 404 22 HOH HOH . 
N 3 HOH B 5 405 10 HOH HOH . 
N 3 HOH B 6 406 59 HOH HOH . 
N 3 HOH B 7 407 17 HOH HOH . 
N 3 HOH B 8 408 58 HOH HOH . 
N 3 HOH B 9 409 46 HOH HOH . 
N 3 HOH B 10 410 72 HOH HOH . 
N 3 HOH B 11 411 75 HOH HOH . 
O 3 HOH C 1 401 3 HOH HOH . 
O 3 HOH C 2 402 28 HOH HOH . 
O 3 HOH C 3 403 36 HOH HOH . 
O 3 HOH C 4 404 51 HOH HOH . 
O 3 HOH C 5 405 8 HOH HOH . 
O 3 HOH C 6 406 35 HOH HOH . 
O 3 HOH C 7 407 26 HOH HOH . 
O 3 HOH C 8 408 21 HOH HOH . 
O 3 HOH C 9 409 71 HOH HOH . 
P 3 HOH D 1 401 6 HOH HOH . 
P 3 HOH D 2 402 45 HOH HOH . 
P 3 HOH D 3 403 54 HOH HOH . 
P 3 HOH D 4 404 23 HOH HOH . 
P 3 HOH D 5 405 57 HOH HOH . 
P 3 HOH D 6 406 68 HOH HOH . 
P 3 HOH D 7 407 41 HOH HOH . 
P 3 HOH D 8 408 25 HOH HOH . 
P 3 HOH D 9 409 37 HOH HOH . 
P 3 HOH D 10 410 14 HOH HOH . 
P 3 HOH D 11 411 30 HOH HOH . 
P 3 HOH D 12 412 18 HOH HOH . 
P 3 HOH D 13 413 12 HOH HOH . 
P 3 HOH D 14 414 7 HOH HOH . 
P 3 HOH D 15 415 47 HOH HOH . 
P 3 HOH D 16 416 50 HOH HOH . 
P 3 HOH D 17 417 27 HOH HOH . 
P 3 HOH D 18 418 44 HOH HOH . 
P 3 HOH D 19 419 52 HOH HOH . 
Q 3 HOH E 1 401 48 HOH HOH . 
Q 3 HOH E 2 402 76 HOH HOH . 
Q 3 HOH E 3 403 1 HOH HOH . 
Q 3 HOH E 4 404 29 HOH HOH . 
Q 3 HOH E 5 405 40 HOH HOH . 
Q 3 HOH E 6 406 13 HOH HOH . 
Q 3 HOH E 7 407 33 HOH HOH . 
Q 3 HOH E 8 408 66 HOH HOH . 
Q 3 HOH E 9 409 2 HOH HOH . 
Q 3 HOH E 10 410 67 HOH HOH . 
Q 3 HOH E 11 411 61 HOH HOH . 
Q 3 HOH E 12 412 16 HOH HOH . 
Q 3 HOH E 13 413 53 HOH HOH . 
Q 3 HOH E 14 414 9 HOH HOH . 
Q 3 HOH E 15 415 70 HOH HOH . 
Q 3 HOH E 16 416 24 HOH HOH . 
Q 3 HOH E 17 417 32 HOH HOH . 
R 3 HOH F 1 401 31 HOH HOH . 
R 3 HOH F 2 402 78 HOH HOH . 
R 3 HOH F 3 403 4 HOH HOH . 
R 3 HOH F 4 404 11 HOH HOH . 
R 3 HOH F 5 405 60 HOH HOH . 
R 3 HOH F 6 406 56 HOH HOH . 
R 3 HOH F 7 407 74 HOH HOH . 
R 3 HOH F 8 408 62 HOH HOH . 
R 3 HOH F 9 409 43 HOH HOH . 
R 3 HOH F 10 410 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . L 2 3.118 23.933 128.137 1 98.92 ? PA NAD 301 F 1 
HETATM 2 O O1A NAD . . . L 2 4.286 23.862 127.184 1 104.1 -1 O1A NAD 301 F 1 
HETATM 3 O O2A NAD . . . L 2 3.433 24.899 129.261 1 80.16 ? O2A NAD 301 F 1 
HETATM 4 O O5B NAD . . . L 2 2.82 22.403 128.763 1 89.93 ? O5B NAD 301 F 1 
HETATM 5 C C5B NAD . . . L 2 1.556 21.812 128.502 1 87.34 ? C5B NAD 301 F 1 
HETATM 6 C C4B NAD . . . L 2 1.083 21.106 129.798 1 87.19 ? C4B NAD 301 F 1 
HETATM 7 O O4B NAD . . . L 2 0.119 20.259 129.531 1 88.98 ? O4B NAD 301 F 1 
HETATM 8 C C3B NAD . . . L 2 2.263 20.257 130.388 1 89.26 ? C3B NAD 301 F 1 
HETATM 9 O O3B NAD . . . L 2 2.237 20.306 131.727 1 85.42 ? O3B NAD 301 F 1 
HETATM 10 C C2B NAD . . . L 2 1.961 18.817 129.886 1 92.71 ? C2B NAD 301 F 1 
HETATM 11 O O2B NAD . . . L 2 2.599 17.8 130.793 1 92.5 ? O2B NAD 301 F 1 
HETATM 12 C C1B NAD . . . L 2 0.648 18.753 129.954 1 90.94 ? C1B NAD 301 F 1 
HETATM 13 N N9A NAD . . . L 2 0.132 17.763 129.037 1 96.09 ? N9A NAD 301 F 1 
HETATM 14 C C8A NAD . . . L 2 0.496 17.625 127.769 1 95.7 ? C8A NAD 301 F 1 
HETATM 15 N N7A NAD . . . L 2 -0.167 16.629 127.219 1 95.97 ? N7A NAD 301 F 1 
HETATM 16 C C5A NAD . . . L 2 -0.985 16.106 128.143 1 106.23 ? C5A NAD 301 F 1 
HETATM 17 C C6A NAD . . . L 2 -1.906 15.071 128.164 1 100.2 ? C6A NAD 301 F 1 
HETATM 18 N N6A NAD . . . L 2 -2.14 14.276 126.956 1 96.26 ? N6A NAD 301 F 1 
HETATM 19 N N1A NAD . . . L 2 -2.567 14.801 129.257 1 94.97 ? N1A NAD 301 F 1 
HETATM 20 C C2A NAD . . . L 2 -2.346 15.527 130.346 1 90.46 ? C2A NAD 301 F 1 
HETATM 21 N N3A NAD . . . L 2 -1.493 16.511 130.383 1 97.38 ? N3A NAD 301 F 1 
HETATM 22 C C4A NAD . . . L 2 -0.792 16.835 129.308 1 101.06 ? C4A NAD 301 F 1 
HETATM 23 O O3 NAD . . . L 2 1.772 24.448 127.329 1 91.47 ? O3 NAD 301 F 1 
HETATM 24 P PN NAD . . . L 2 0.917 25.834 127.736 1 91.54 ? PN NAD 301 F 1 
HETATM 25 O O1N NAD . . . L 2 1.754 27.048 127.429 1 102.75 -1 O1N NAD 301 F 1 
HETATM 26 O O2N NAD . . . L 2 0.576 25.806 129.215 1 82.7 ? O2N NAD 301 F 1 
HETATM 27 O O5D NAD . . . L 2 -0.501 25.914 126.828 1 83.52 ? O5D NAD 301 F 1 
HETATM 28 C C5D NAD . . . L 2 -1.651 25.113 127.204 1 80.26 ? C5D NAD 301 F 1 
HETATM 29 C C4D NAD . . . L 2 -2.794 25.389 126.129 1 77.35 ? C4D NAD 301 F 1 
HETATM 30 O O4D NAD . . . L 2 -3.216 26.578 126.223 1 83.32 ? O4D NAD 301 F 1 
HETATM 31 C C3D NAD . . . L 2 -2.202 25.243 124.668 1 79.98 ? C3D NAD 301 F 1 
HETATM 32 O O3D NAD . . . L 2 -3.1 24.562 123.871 1 73.7 ? O3D NAD 301 F 1 
HETATM 33 C C2D NAD . . . L 2 -2.049 26.651 124.216 1 80.9 ? C2D NAD 301 F 1 
HETATM 34 O O2D NAD . . . L 2 -2.045 26.787 122.718 1 79.21 ? O2D NAD 301 F 1 
HETATM 35 C C1D NAD . . . L 2 -3.111 27.226 124.743 1 78.91 ? C1D NAD 301 F 1 
HETATM 36 N N1N NAD . . . L 2 -2.952 28.678 124.774 1 77.29 ? N1N NAD 301 F 1 
HETATM 37 C C2N NAD . . . L 2 -1.625 29.117 125.335 1 82.99 ? C2N NAD 301 F 1 
HETATM 38 C C3N NAD . . . L 2 -1.434 30.627 125.131 1 89.14 ? C3N NAD 301 F 1 
HETATM 39 C C7N NAD . . . L 2 -0.166 31.07 125.882 1 82.73 ? C7N NAD 301 F 1 
HETATM 40 O O7N NAD . . . L 2 0.488 30.274 126.473 1 82.96 ? O7N NAD 301 F 1 
HETATM 41 N N7N NAD . . . L 2 0.238 32.502 125.869 1 78.69 ? N7N NAD 301 F 1 
HETATM 42 C C4N NAD . . . L 2 -2.598 31.457 125.634 1 79.53 ? C4N NAD 301 F 1 
HETATM 43 C C5N NAD . . . L 2 -3.979 30.885 125.389 1 70.84 ? C5N NAD 301 F 1 
HETATM 44 C C6N NAD . . . L 2 -4.089 29.353 125.491 1 71.54 ? C6N NAD 301 F 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           686 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#