data_9JL7 # _model_server_result.job_id 5CMMy_WGOyRf7WmAX4J0Sg _model_server_result.datetime_utc '2025-03-13 07:20:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":102}' # _entry.id 9JL7 # _exptl.entry_id 9JL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9JL7 _cell.length_a 27.002 _cell.length_b 27.002 _cell.length_c 205.993 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C THR 1 G THR 1 1_555 C N DVA 2 G DVA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 C OG1 THR 1 G THR 1 1_555 C C MVA 5 G MVA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale3 C N THR 1 G THR 1 1_555 C C0 PXZ 6 G PXZ 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale4 C C DVA 2 G DVA 2 1_555 C N PRO 3 G PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 C C PRO 3 G PRO 3 1_555 C N SAR 4 G SAR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 C C SAR 4 G SAR 4 1_555 C N MVA 5 G MVA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 C C0' PXZ 6 G PXZ 6 1_555 C N THR 7 G THR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale8 C C THR 7 G THR 7 1_555 C N DVA 8 G DVA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale9 C OG1 THR 7 G THR 7 1_555 C C MVA 11 G MVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale10 C C DVA 8 G DVA 8 1_555 C N PRO 9 G PRO 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale11 C C PRO 9 G PRO 9 1_555 C N SAR 10 G SAR 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 C C SAR 10 G SAR 10 1_555 C N MVA 11 G MVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A N7 DG 5 A DG 5 1_555 F MN MN . A MN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc2 E MN MN . A MN 102 1_555 I O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc3 E MN MN . A MN 102 1_555 I O HOH . A HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc4 E MN MN . A MN 102 1_555 I O HOH . A HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc5 E MN MN . A MN 102 1_555 I O HOH . A HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 E MN MN . A MN 102 1_555 I O HOH . A HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc7 E MN MN . A MN 102 1_555 I O HOH . A HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc8 F MN MN . A MN 103 1_555 I O HOH . A HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc9 F MN MN . A MN 103 1_555 I O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc10 F MN MN . A MN 103 1_555 I O HOH . A HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc11 F MN MN . A MN 103 1_555 I O HOH . A HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc12 F MN MN . A MN 103 1_555 I O HOH . A HOH 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc13 I O HOH . A HOH 219 1_555 G MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc14 B N7 DG 3 B DG 4 1_555 G MN MN . B MN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc15 G MN MN . B MN 101 1_555 J O HOH . B HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc16 G MN MN . B MN 101 1_555 J O HOH . B HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc17 G MN MN . B MN 101 1_555 J O HOH . B HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc18 G MN MN . B MN 101 1_555 J O HOH . B HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? hydrog WATSON-CRICK hydrog1 A N1 DA 1 A DA 1 1_555 B N3 DT 6 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 1 A DA 1 1_555 B O4 DT 6 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DC 3 A DC 3 1_555 B N1 DG 4 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 DC 3 A DC 3 1_555 B O6 DG 4 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 DC 3 A DC 3 1_555 B N2 DG 4 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 4 A DC 4 1_555 B N1 DG 3 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 4 A DC 4 1_555 B O6 DG 3 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 4 A DC 4 1_555 B N2 DG 3 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DG 5 A DG 5 1_555 B N3 DC 2 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 DG 5 A DG 5 1_555 B O2 DC 2 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 DG 5 A DG 5 1_555 B N4 DC 2 B DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DT 6 A DT 6 1_555 B N1 DA 1 B DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 DT 6 A DT 6 1_555 B N6 DA 1 B DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9JL7 _atom_sites.fract_transf_matrix[1][1] 0.037034 _atom_sites.fract_transf_matrix[1][2] 0.021382 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.042764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DM2 A 1 101 101 DM2 DM2 . E 5 MN A 1 102 2 MN MN . F 5 MN A 1 103 3 MN MN . G 5 MN B 1 101 1 MN MN . H 6 CL B 1 102 2 CL CL . I 7 HOH A 1 201 69 HOH HOH . I 7 HOH A 2 202 64 HOH HOH . I 7 HOH A 3 203 33 HOH HOH . I 7 HOH A 4 204 50 HOH HOH . I 7 HOH A 5 205 41 HOH HOH . I 7 HOH A 6 206 16 HOH HOH . I 7 HOH A 7 207 68 HOH HOH . I 7 HOH A 8 208 6 HOH HOH . I 7 HOH A 9 209 40 HOH HOH . I 7 HOH A 10 210 38 HOH HOH . I 7 HOH A 11 211 8 HOH HOH . I 7 HOH A 12 212 93 HOH HOH . I 7 HOH A 13 213 23 HOH HOH . I 7 HOH A 14 214 78 HOH HOH . I 7 HOH A 15 215 87 HOH HOH . I 7 HOH A 16 216 73 HOH HOH . I 7 HOH A 17 217 15 HOH HOH . I 7 HOH A 18 218 17 HOH HOH . I 7 HOH A 19 219 13 HOH HOH . I 7 HOH A 20 220 12 HOH HOH . I 7 HOH A 21 221 14 HOH HOH . I 7 HOH A 22 222 53 HOH HOH . I 7 HOH A 23 223 46 HOH HOH . I 7 HOH A 24 224 82 HOH HOH . I 7 HOH A 25 225 71 HOH HOH . I 7 HOH A 26 226 37 HOH HOH . I 7 HOH A 27 227 63 HOH HOH . I 7 HOH A 28 228 77 HOH HOH . I 7 HOH A 29 229 85 HOH HOH . I 7 HOH A 30 230 59 HOH HOH . I 7 HOH A 31 231 57 HOH HOH . I 7 HOH A 32 232 67 HOH HOH . I 7 HOH A 33 233 91 HOH HOH . I 7 HOH A 34 234 55 HOH HOH . I 7 HOH A 35 235 26 HOH HOH . I 7 HOH A 36 236 48 HOH HOH . I 7 HOH A 37 237 22 HOH HOH . I 7 HOH A 38 238 80 HOH HOH . I 7 HOH A 39 239 83 HOH HOH . I 7 HOH A 40 240 52 HOH HOH . I 7 HOH A 41 241 44 HOH HOH . I 7 HOH A 42 242 47 HOH HOH . I 7 HOH A 43 243 81 HOH HOH . I 7 HOH A 44 244 58 HOH HOH . J 7 HOH B 1 201 34 HOH HOH . J 7 HOH B 2 202 1 HOH HOH . J 7 HOH B 3 203 43 HOH HOH . J 7 HOH B 4 204 7 HOH HOH . J 7 HOH B 5 205 30 HOH HOH . J 7 HOH B 6 206 45 HOH HOH . J 7 HOH B 7 207 60 HOH HOH . J 7 HOH B 8 208 21 HOH HOH . J 7 HOH B 9 209 2 HOH HOH . J 7 HOH B 10 210 4 HOH HOH . J 7 HOH B 11 211 9 HOH HOH . J 7 HOH B 12 212 10 HOH HOH . J 7 HOH B 13 213 11 HOH HOH . J 7 HOH B 14 214 5 HOH HOH . J 7 HOH B 15 215 3 HOH HOH . J 7 HOH B 16 216 25 HOH HOH . J 7 HOH B 17 217 24 HOH HOH . J 7 HOH B 18 218 51 HOH HOH . J 7 HOH B 19 219 90 HOH HOH . J 7 HOH B 20 220 20 HOH HOH . J 7 HOH B 21 221 56 HOH HOH . J 7 HOH B 22 222 28 HOH HOH . J 7 HOH B 23 223 32 HOH HOH . J 7 HOH B 24 224 62 HOH HOH . J 7 HOH B 25 225 54 HOH HOH . J 7 HOH B 26 226 79 HOH HOH . J 7 HOH B 27 227 27 HOH HOH . J 7 HOH B 28 228 29 HOH HOH . J 7 HOH B 29 229 36 HOH HOH . J 7 HOH B 30 230 70 HOH HOH . J 7 HOH B 31 231 72 HOH HOH . J 7 HOH B 32 232 66 HOH HOH . J 7 HOH B 33 233 76 HOH HOH . K 7 HOH G 1 101 39 HOH HOH . K 7 HOH G 2 102 35 HOH HOH . K 7 HOH G 3 103 42 HOH HOH . K 7 HOH G 4 104 18 HOH HOH . K 7 HOH G 5 105 19 HOH HOH . K 7 HOH G 6 106 61 HOH HOH . K 7 HOH G 7 107 86 HOH HOH . K 7 HOH G 8 108 49 HOH HOH . K 7 HOH G 9 109 89 HOH HOH . K 7 HOH G 10 110 65 HOH HOH . K 7 HOH G 11 111 31 HOH HOH . K 7 HOH G 12 112 84 HOH HOH . K 7 HOH G 13 113 74 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 18.397 _atom_site.Cartn_y -6.757 _atom_site.Cartn_z 0.719 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #