data_9JN3 # _model_server_result.job_id pljQTpD9TMHAlhdLBMmA9w _model_server_result.datetime_utc '2025-02-23 16:32:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jn3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 9JN3 # _exptl.entry_id 9JN3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.12 _cell.angle_gamma 90 _cell.entry_id 9JN3 _cell.length_a 43.302 _cell.length_b 95.114 _cell.length_c 70.988 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JN3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 91 A ASP 91 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc2 A OD2 ASP 91 A ASP 91 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 C O2A UPG . A UPG 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc4 C O1B UPG . A UPG 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc5 E MG MG . A MG 403 1_555 I O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc6 E MG MG . A MG 403 1_555 I O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc7 B OD1 ASP 91 B ASP 91 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc8 B OD2 ASP 91 B ASP 91 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc9 F O2A UPG . B UPG 401 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc10 F O1B UPG . B UPG 401 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc11 H MG MG . B MG 403 1_555 J O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc12 H MG MG . B MG 403 1_555 J O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9JN3 _atom_sites.fract_transf_matrix[1][1] 0.023094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004538 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UPG A 1 401 401 UPG DRG . D 3 RAB A 1 402 501 RAB Ara . E 4 MG A 1 403 2 MG MG . F 2 UPG B 1 401 401 UPG DRG . G 3 RAB B 1 402 501 RAB Ara . H 4 MG B 1 403 1 MG MG . I 5 HOH A 1 501 129 HOH HOH . I 5 HOH A 2 502 114 HOH HOH . I 5 HOH A 3 503 128 HOH HOH . I 5 HOH A 4 504 22 HOH HOH . I 5 HOH A 5 505 65 HOH HOH . I 5 HOH A 6 506 54 HOH HOH . I 5 HOH A 7 507 44 HOH HOH . I 5 HOH A 8 508 68 HOH HOH . I 5 HOH A 9 509 111 HOH HOH . I 5 HOH A 10 510 46 HOH HOH . I 5 HOH A 11 511 24 HOH HOH . I 5 HOH A 12 512 132 HOH HOH . I 5 HOH A 13 513 82 HOH HOH . I 5 HOH A 14 514 59 HOH HOH . I 5 HOH A 15 515 43 HOH HOH . I 5 HOH A 16 516 13 HOH HOH . I 5 HOH A 17 517 126 HOH HOH . I 5 HOH A 18 518 40 HOH HOH . I 5 HOH A 19 519 103 HOH HOH . I 5 HOH A 20 520 20 HOH HOH . I 5 HOH A 21 521 77 HOH HOH . I 5 HOH A 22 522 57 HOH HOH . I 5 HOH A 23 523 48 HOH HOH . I 5 HOH A 24 524 67 HOH HOH . I 5 HOH A 25 525 3 HOH HOH . I 5 HOH A 26 526 12 HOH HOH . I 5 HOH A 27 527 35 HOH HOH . I 5 HOH A 28 528 42 HOH HOH . I 5 HOH A 29 529 10 HOH HOH . I 5 HOH A 30 530 11 HOH HOH . I 5 HOH A 31 531 94 HOH HOH . I 5 HOH A 32 532 38 HOH HOH . I 5 HOH A 33 533 99 HOH HOH . I 5 HOH A 34 534 97 HOH HOH . I 5 HOH A 35 535 98 HOH HOH . I 5 HOH A 36 536 31 HOH HOH . I 5 HOH A 37 537 47 HOH HOH . I 5 HOH A 38 538 101 HOH HOH . I 5 HOH A 39 539 8 HOH HOH . I 5 HOH A 40 540 133 HOH HOH . I 5 HOH A 41 541 29 HOH HOH . I 5 HOH A 42 542 137 HOH HOH . I 5 HOH A 43 543 23 HOH HOH . I 5 HOH A 44 544 53 HOH HOH . I 5 HOH A 45 545 34 HOH HOH . I 5 HOH A 46 546 89 HOH HOH . I 5 HOH A 47 547 100 HOH HOH . I 5 HOH A 48 548 93 HOH HOH . I 5 HOH A 49 549 30 HOH HOH . I 5 HOH A 50 550 21 HOH HOH . I 5 HOH A 51 551 25 HOH HOH . I 5 HOH A 52 552 49 HOH HOH . I 5 HOH A 53 553 102 HOH HOH . I 5 HOH A 54 554 96 HOH HOH . I 5 HOH A 55 555 62 HOH HOH . I 5 HOH A 56 556 139 HOH HOH . I 5 HOH A 57 557 134 HOH HOH . I 5 HOH A 58 558 79 HOH HOH . I 5 HOH A 59 559 105 HOH HOH . I 5 HOH A 60 560 135 HOH HOH . I 5 HOH A 61 561 87 HOH HOH . I 5 HOH A 62 562 136 HOH HOH . I 5 HOH A 63 563 80 HOH HOH . I 5 HOH A 64 564 63 HOH HOH . I 5 HOH A 65 565 130 HOH HOH . J 5 HOH B 1 501 84 HOH HOH . J 5 HOH B 2 502 55 HOH HOH . J 5 HOH B 3 503 119 HOH HOH . J 5 HOH B 4 504 74 HOH HOH . J 5 HOH B 5 505 4 HOH HOH . J 5 HOH B 6 506 112 HOH HOH . J 5 HOH B 7 507 104 HOH HOH . J 5 HOH B 8 508 14 HOH HOH . J 5 HOH B 9 509 75 HOH HOH . J 5 HOH B 10 510 70 HOH HOH . J 5 HOH B 11 511 71 HOH HOH . J 5 HOH B 12 512 107 HOH HOH . J 5 HOH B 13 513 45 HOH HOH . J 5 HOH B 14 514 52 HOH HOH . J 5 HOH B 15 515 122 HOH HOH . J 5 HOH B 16 516 9 HOH HOH . J 5 HOH B 17 517 64 HOH HOH . J 5 HOH B 18 518 33 HOH HOH . J 5 HOH B 19 519 118 HOH HOH . J 5 HOH B 20 520 36 HOH HOH . J 5 HOH B 21 521 41 HOH HOH . J 5 HOH B 22 522 39 HOH HOH . J 5 HOH B 23 523 28 HOH HOH . J 5 HOH B 24 524 76 HOH HOH . J 5 HOH B 25 525 16 HOH HOH . J 5 HOH B 26 526 6 HOH HOH . J 5 HOH B 27 527 26 HOH HOH . J 5 HOH B 28 528 83 HOH HOH . J 5 HOH B 29 529 85 HOH HOH . J 5 HOH B 30 530 72 HOH HOH . J 5 HOH B 31 531 61 HOH HOH . J 5 HOH B 32 532 19 HOH HOH . J 5 HOH B 33 533 5 HOH HOH . J 5 HOH B 34 534 88 HOH HOH . J 5 HOH B 35 535 66 HOH HOH . J 5 HOH B 36 536 116 HOH HOH . J 5 HOH B 37 537 18 HOH HOH . J 5 HOH B 38 538 81 HOH HOH . J 5 HOH B 39 539 51 HOH HOH . J 5 HOH B 40 540 7 HOH HOH . J 5 HOH B 41 541 37 HOH HOH . J 5 HOH B 42 542 91 HOH HOH . J 5 HOH B 43 543 27 HOH HOH . J 5 HOH B 44 544 60 HOH HOH . J 5 HOH B 45 545 86 HOH HOH . J 5 HOH B 46 546 1 HOH HOH . J 5 HOH B 47 547 50 HOH HOH . J 5 HOH B 48 548 73 HOH HOH . J 5 HOH B 49 549 90 HOH HOH . J 5 HOH B 50 550 17 HOH HOH . J 5 HOH B 51 551 2 HOH HOH . J 5 HOH B 52 552 32 HOH HOH . J 5 HOH B 53 553 125 HOH HOH . J 5 HOH B 54 554 120 HOH HOH . J 5 HOH B 55 555 78 HOH HOH . J 5 HOH B 56 556 58 HOH HOH . J 5 HOH B 57 557 92 HOH HOH . J 5 HOH B 58 558 121 HOH HOH . J 5 HOH B 59 559 110 HOH HOH . J 5 HOH B 60 560 56 HOH HOH . J 5 HOH B 61 561 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 2.064 _atom_site.Cartn_y 18.325 _atom_site.Cartn_z -20.694 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 726 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #