data_9JOX
#
_model_server_result.job_id            ogJqus430VcJb-uGCojdKQ 
_model_server_result.datetime_utc      '2025-08-31 11:44:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9jox 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":306}' 
#
_entry.id    9JOX 
#
_exptl.entry_id    9JOX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              170.335 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECANE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9JOX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9JOX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 IA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 242 A LYS 235 1_555 F C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale2 B NZ LYS 242 B LYS 235 1_555 O C15 RET . B RET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.263 ? 
covale ? covale3 C NZ LYS 242 C LYS 235 1_555 V C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? 
covale ? covale4 D NZ LYS 242 D LYS 235 1_555 CA C15 RET . D RET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.249 ? 
covale ? covale5 E NZ LYS 242 E LYS 235 1_555 KA C15 RET . E RET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? 
#
_chem_comp.formula           'C12 H26' 
_chem_comp.formula_weight    170.335 
_chem_comp.id                D12 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D12 sing 181 n n 
C1 H11 D12 sing 182 n n 
C1 H12 D12 sing 183 n n 
C1 H13 D12 sing 184 n n 
C2 C3 D12 sing 185 n n 
C2 H21 D12 sing 186 n n 
C2 H22 D12 sing 187 n n 
C3 C4 D12 sing 188 n n 
C3 H31 D12 sing 189 n n 
C3 H32 D12 sing 190 n n 
C4 C5 D12 sing 191 n n 
C4 H41 D12 sing 192 n n 
C4 H42 D12 sing 193 n n 
C5 C6 D12 sing 194 n n 
C5 H51 D12 sing 195 n n 
C5 H52 D12 sing 196 n n 
C6 C7 D12 sing 197 n n 
C6 H61 D12 sing 198 n n 
C6 H62 D12 sing 199 n n 
C7 C8 D12 sing 200 n n 
C7 H71 D12 sing 201 n n 
C7 H72 D12 sing 202 n n 
C8 C9 D12 sing 203 n n 
C8 H81 D12 sing 204 n n 
C8 H82 D12 sing 205 n n 
C9 C10 D12 sing 206 n n 
C9 H91 D12 sing 207 n n 
C9 H92 D12 sing 208 n n 
C10 C11 D12 sing 209 n n 
C10 H101 D12 sing 210 n n 
C10 H102 D12 sing 211 n n 
C11 C12 D12 sing 212 n n 
C11 H111 D12 sing 213 n n 
C11 H112 D12 sing 214 n n 
C12 H121 D12 sing 215 n n 
C12 H122 D12 sing 216 n n 
C12 H123 D12 sing 217 n n 
#
_atom_sites.entry_id                     9JOX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 RET A 1 301 301 RET RET . 
G 3 CL A 1 302 303 CL CL . 
H 3 CL A 1 303 304 CL CL . 
I 4 PC1 A 1 304 501 PC1 PC1 . 
J 5 PLC A 1 305 502 PLC PLC . 
K 6 D12 A 1 306 507 D12 D12 . 
L 5 PLC A 1 307 502 PLC PLC . 
M 7 R16 A 1 308 506 R16 R16 . 
N 8 8K6 B 1 301 506 8K6 8K6 . 
O 2 RET B 1 302 301 RET RET . 
P 3 CL B 1 303 303 CL CL . 
Q 3 CL B 1 304 304 CL CL . 
R 4 PC1 B 1 305 501 PC1 PC1 . 
S 5 PLC B 1 306 502 PLC PLC . 
T 7 R16 B 1 307 506 R16 R16 . 
U 9 C14 B 1 308 507 C14 C14 . 
V 2 RET C 1 301 301 RET RET . 
W 3 CL C 1 302 303 CL CL . 
X 3 CL C 1 303 304 CL CL . 
Y 4 PC1 C 1 304 501 PC1 PC1 . 
Z 5 PLC C 1 305 502 PLC PLC . 
AA 8 8K6 C 1 306 507 8K6 8K6 . 
BA 7 R16 D 1 301 506 R16 R16 . 
CA 2 RET D 1 302 301 RET RET . 
DA 3 CL D 1 303 303 CL CL . 
EA 3 CL D 1 304 304 CL CL . 
FA 4 PC1 D 1 305 501 PC1 PC1 . 
GA 5 PLC D 1 306 502 PLC PLC . 
HA 7 R16 D 1 307 505 R16 R16 . 
IA 6 D12 D 1 308 507 D12 D12 . 
JA 7 R16 E 1 301 506 R16 R16 . 
KA 2 RET E 1 302 301 RET RET . 
LA 3 CL E 1 303 303 CL CL . 
MA 3 CL E 1 304 304 CL CL . 
NA 4 PC1 E 1 305 501 PC1 PC1 . 
OA 7 R16 E 1 306 505 R16 R16 . 
PA 9 C14 E 1 307 507 C14 C14 . 
QA 10 HOH A 1 401 411 HOH HOH . 
QA 10 HOH A 2 402 403 HOH HOH . 
QA 10 HOH A 3 403 429 HOH HOH . 
QA 10 HOH A 4 404 439 HOH HOH . 
QA 10 HOH A 5 405 422 HOH HOH . 
QA 10 HOH A 6 406 430 HOH HOH . 
QA 10 HOH A 7 407 418 HOH HOH . 
QA 10 HOH A 8 408 410 HOH HOH . 
QA 10 HOH A 9 409 424 HOH HOH . 
QA 10 HOH A 10 410 401 HOH HOH . 
QA 10 HOH A 11 411 417 HOH HOH . 
QA 10 HOH A 12 412 406 HOH HOH . 
QA 10 HOH A 13 413 407 HOH HOH . 
QA 10 HOH A 14 414 405 HOH HOH . 
QA 10 HOH A 15 415 419 HOH HOH . 
QA 10 HOH A 16 416 427 HOH HOH . 
QA 10 HOH A 17 417 415 HOH HOH . 
QA 10 HOH A 18 418 409 HOH HOH . 
QA 10 HOH A 19 419 404 HOH HOH . 
QA 10 HOH A 20 420 421 HOH HOH . 
QA 10 HOH A 21 421 402 HOH HOH . 
QA 10 HOH A 22 422 436 HOH HOH . 
QA 10 HOH A 23 423 434 HOH HOH . 
QA 10 HOH A 24 424 420 HOH HOH . 
QA 10 HOH A 25 425 426 HOH HOH . 
QA 10 HOH A 26 426 423 HOH HOH . 
QA 10 HOH A 27 427 428 HOH HOH . 
QA 10 HOH A 28 428 431 HOH HOH . 
QA 10 HOH A 29 429 438 HOH HOH . 
QA 10 HOH A 30 430 440 HOH HOH . 
QA 10 HOH A 31 431 408 HOH HOH . 
QA 10 HOH A 32 432 437 HOH HOH . 
RA 10 HOH B 1 401 403 HOH HOH . 
RA 10 HOH B 2 402 406 HOH HOH . 
RA 10 HOH B 3 403 413 HOH HOH . 
RA 10 HOH B 4 404 415 HOH HOH . 
RA 10 HOH B 5 405 428 HOH HOH . 
RA 10 HOH B 6 406 426 HOH HOH . 
RA 10 HOH B 7 407 405 HOH HOH . 
RA 10 HOH B 8 408 411 HOH HOH . 
RA 10 HOH B 9 409 421 HOH HOH . 
RA 10 HOH B 10 410 409 HOH HOH . 
RA 10 HOH B 11 411 412 HOH HOH . 
RA 10 HOH B 12 412 410 HOH HOH . 
RA 10 HOH B 13 413 422 HOH HOH . 
RA 10 HOH B 14 414 420 HOH HOH . 
RA 10 HOH B 15 415 418 HOH HOH . 
RA 10 HOH B 16 416 401 HOH HOH . 
RA 10 HOH B 17 417 425 HOH HOH . 
RA 10 HOH B 18 418 419 HOH HOH . 
RA 10 HOH B 19 419 412 HOH HOH . 
RA 10 HOH B 20 420 427 HOH HOH . 
RA 10 HOH B 21 421 404 HOH HOH . 
RA 10 HOH B 22 422 408 HOH HOH . 
RA 10 HOH B 23 423 417 HOH HOH . 
RA 10 HOH B 24 424 441 HOH HOH . 
RA 10 HOH B 25 425 429 HOH HOH . 
RA 10 HOH B 26 426 416 HOH HOH . 
RA 10 HOH B 27 427 430 HOH HOH . 
RA 10 HOH B 28 428 407 HOH HOH . 
SA 10 HOH C 1 401 404 HOH HOH . 
SA 10 HOH C 2 402 417 HOH HOH . 
SA 10 HOH C 3 403 428 HOH HOH . 
SA 10 HOH C 4 404 431 HOH HOH . 
SA 10 HOH C 5 405 423 HOH HOH . 
SA 10 HOH C 6 406 437 HOH HOH . 
SA 10 HOH C 7 407 402 HOH HOH . 
SA 10 HOH C 8 408 410 HOH HOH . 
SA 10 HOH C 9 409 414 HOH HOH . 
SA 10 HOH C 10 410 426 HOH HOH . 
SA 10 HOH C 11 411 408 HOH HOH . 
SA 10 HOH C 12 412 413 HOH HOH . 
SA 10 HOH C 13 413 438 HOH HOH . 
SA 10 HOH C 14 414 409 HOH HOH . 
SA 10 HOH C 15 415 419 HOH HOH . 
SA 10 HOH C 16 416 429 HOH HOH . 
SA 10 HOH C 17 417 436 HOH HOH . 
SA 10 HOH C 18 418 418 HOH HOH . 
SA 10 HOH C 19 419 407 HOH HOH . 
SA 10 HOH C 20 420 415 HOH HOH . 
SA 10 HOH C 21 421 406 HOH HOH . 
SA 10 HOH C 22 422 403 HOH HOH . 
SA 10 HOH C 23 423 411 HOH HOH . 
SA 10 HOH C 24 424 405 HOH HOH . 
SA 10 HOH C 25 425 424 HOH HOH . 
SA 10 HOH C 26 426 401 HOH HOH . 
SA 10 HOH C 27 427 435 HOH HOH . 
SA 10 HOH C 28 428 424 HOH HOH . 
SA 10 HOH C 29 429 412 HOH HOH . 
SA 10 HOH C 30 430 442 HOH HOH . 
SA 10 HOH C 31 431 425 HOH HOH . 
SA 10 HOH C 32 432 433 HOH HOH . 
SA 10 HOH C 33 433 416 HOH HOH . 
SA 10 HOH C 34 434 439 HOH HOH . 
SA 10 HOH C 35 435 430 HOH HOH . 
TA 10 HOH D 1 401 422 HOH HOH . 
TA 10 HOH D 2 402 426 HOH HOH . 
TA 10 HOH D 3 403 427 HOH HOH . 
TA 10 HOH D 4 404 412 HOH HOH . 
TA 10 HOH D 5 405 419 HOH HOH . 
TA 10 HOH D 6 406 409 HOH HOH . 
TA 10 HOH D 7 407 404 HOH HOH . 
TA 10 HOH D 8 408 406 HOH HOH . 
TA 10 HOH D 9 409 407 HOH HOH . 
TA 10 HOH D 10 410 405 HOH HOH . 
TA 10 HOH D 11 411 423 HOH HOH . 
TA 10 HOH D 12 412 401 HOH HOH . 
TA 10 HOH D 13 413 425 HOH HOH . 
TA 10 HOH D 14 414 431 HOH HOH . 
TA 10 HOH D 15 415 411 HOH HOH . 
TA 10 HOH D 16 416 402 HOH HOH . 
TA 10 HOH D 17 417 420 HOH HOH . 
TA 10 HOH D 18 418 417 HOH HOH . 
TA 10 HOH D 19 419 408 HOH HOH . 
TA 10 HOH D 20 420 410 HOH HOH . 
TA 10 HOH D 21 421 423 HOH HOH . 
TA 10 HOH D 22 422 413 HOH HOH . 
TA 10 HOH D 23 423 418 HOH HOH . 
TA 10 HOH D 24 424 430 HOH HOH . 
TA 10 HOH D 25 425 432 HOH HOH . 
TA 10 HOH D 26 426 428 HOH HOH . 
TA 10 HOH D 27 427 403 HOH HOH . 
TA 10 HOH D 28 428 424 HOH HOH . 
TA 10 HOH D 29 429 443 HOH HOH . 
TA 10 HOH D 30 430 421 HOH HOH . 
UA 10 HOH E 1 401 406 HOH HOH . 
UA 10 HOH E 2 402 412 HOH HOH . 
UA 10 HOH E 3 403 405 HOH HOH . 
UA 10 HOH E 4 404 415 HOH HOH . 
UA 10 HOH E 5 405 428 HOH HOH . 
UA 10 HOH E 6 406 403 HOH HOH . 
UA 10 HOH E 7 407 426 HOH HOH . 
UA 10 HOH E 8 408 425 HOH HOH . 
UA 10 HOH E 9 409 411 HOH HOH . 
UA 10 HOH E 10 410 404 HOH HOH . 
UA 10 HOH E 11 411 402 HOH HOH . 
UA 10 HOH E 12 412 420 HOH HOH . 
UA 10 HOH E 13 413 418 HOH HOH . 
UA 10 HOH E 14 414 416 HOH HOH . 
UA 10 HOH E 15 415 408 HOH HOH . 
UA 10 HOH E 16 416 410 HOH HOH . 
UA 10 HOH E 17 417 444 HOH HOH . 
UA 10 HOH E 18 418 409 HOH HOH . 
UA 10 HOH E 19 419 427 HOH HOH . 
UA 10 HOH E 20 420 413 HOH HOH . 
UA 10 HOH E 21 421 422 HOH HOH . 
UA 10 HOH E 22 422 419 HOH HOH . 
UA 10 HOH E 23 423 430 HOH HOH . 
UA 10 HOH E 24 424 431 HOH HOH . 
UA 10 HOH E 25 425 407 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D12 . . . K 6 102.091 111.591 79.815 1 187.86 ? C1 D12 306 A 1 
HETATM 2 C C2 D12 . . . K 6 103.177 111.083 78.892 1 193.69 ? C2 D12 306 A 1 
HETATM 3 C C3 D12 . . . K 6 103.052 111.514 77.445 1 223.77 ? C3 D12 306 A 1 
HETATM 4 C C4 D12 . . . K 6 101.677 111.375 76.811 1 228.16 ? C4 D12 306 A 1 
HETATM 5 C C5 D12 . . . K 6 101.667 110.73 75.44 1 236.26 ? C5 D12 306 A 1 
HETATM 6 C C6 D12 . . . K 6 102.591 111.369 74.422 1 257.47 ? C6 D12 306 A 1 
HETATM 7 C C7 D12 . . . K 6 103.532 110.405 73.739 1 258.22 ? C7 D12 306 A 1 
HETATM 8 C C8 D12 . . . K 6 102.849 109.199 73.127 1 255.04 ? C8 D12 306 A 1 
HETATM 9 C C9 D12 . . . K 6 103.396 108.766 71.786 1 254.03 ? C9 D12 306 A 1 
HETATM 10 C C10 D12 . . . K 6 102.331 108.488 70.757 1 246 ? C10 D12 306 A 1 
HETATM 11 C C11 D12 . . . K 6 102.821 108.119 69.376 1 232.75 ? C11 D12 306 A 1 
HETATM 12 C C12 D12 . . . K 6 103.645 106.852 69.325 1 247.69 ? C12 D12 306 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#