data_9JPL # _model_server_result.job_id asFLIr1zGVlMK54AT1mnZA _model_server_result.datetime_utc '2024-11-30 08:42:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jpl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 9JPL # _exptl.entry_id 9JPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 148.114 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-hydroxypentanedioic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JPL _cell.length_a 128 _cell.length_b 128 _cell.length_c 42.95 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 143 A ASP 143 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc2 A NE2 HIS 147 A HIS 147 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc3 A NE2 HIS 195 A HIS 195 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A NE2 HIS 217 A HIS 217 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc5 E O2 2HG . A 2HG 303 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc6 E O3 2HG . A 2HG 303 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc7 B OD1 ASP 143 B ASP 143 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc8 B NE2 HIS 147 B HIS 147 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc9 B NE2 HIS 195 B HIS 195 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc10 B NE2 HIS 217 B HIS 217 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc11 G O1 2HG . B 2HG 301 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc12 G O3 2HG . B 2HG 301 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C5 H8 O5' _chem_comp.formula_weight 148.114 _chem_comp.id 2HG _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-hydroxypentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 2HG doub 1 n n C1 C2 2HG sing 2 n n C1 O2 2HG sing 3 n n C2 C3 2HG sing 4 n n C2 O3 2HG sing 5 n n C3 C4 2HG sing 6 n n C4 C5 2HG sing 7 n n O4 C5 2HG doub 8 n n C5 O5 2HG sing 9 n n C2 H2 2HG sing 10 n n O2 HO2 2HG sing 11 n n C3 H3 2HG sing 12 n n C3 H3A 2HG sing 13 n n O3 HO3 2HG sing 14 n n C4 H4 2HG sing 15 n n C4 H4A 2HG sing 16 n n O5 HO5 2HG sing 17 n n # _atom_sites.entry_id 9JPL _atom_sites.fract_transf_matrix[1][1] 0.007812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023283 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 301 1 CL CL . D 3 2HG A 1 302 2 2HG 2HG . E 3 2HG A 1 303 3 2HG 2HG . F 4 ZN A 1 304 5 ZN ZN . G 3 2HG B 1 301 4 2HG 2HG . H 4 ZN B 1 302 6 ZN ZN . I 5 HOH A 1 401 103 HOH HOH . I 5 HOH A 2 402 83 HOH HOH . I 5 HOH A 3 403 121 HOH HOH . I 5 HOH A 4 404 95 HOH HOH . I 5 HOH A 5 405 111 HOH HOH . I 5 HOH A 6 406 42 HOH HOH . I 5 HOH A 7 407 14 HOH HOH . I 5 HOH A 8 408 3 HOH HOH . I 5 HOH A 9 409 70 HOH HOH . I 5 HOH A 10 410 52 HOH HOH . I 5 HOH A 11 411 96 HOH HOH . I 5 HOH A 12 412 16 HOH HOH . I 5 HOH A 13 413 9 HOH HOH . I 5 HOH A 14 414 7 HOH HOH . I 5 HOH A 15 415 79 HOH HOH . I 5 HOH A 16 416 64 HOH HOH . I 5 HOH A 17 417 51 HOH HOH . I 5 HOH A 18 418 26 HOH HOH . I 5 HOH A 19 419 17 HOH HOH . I 5 HOH A 20 420 46 HOH HOH . I 5 HOH A 21 421 15 HOH HOH . I 5 HOH A 22 422 91 HOH HOH . I 5 HOH A 23 423 12 HOH HOH . I 5 HOH A 24 424 31 HOH HOH . I 5 HOH A 25 425 6 HOH HOH . I 5 HOH A 26 426 65 HOH HOH . I 5 HOH A 27 427 49 HOH HOH . I 5 HOH A 28 428 54 HOH HOH . I 5 HOH A 29 429 81 HOH HOH . I 5 HOH A 30 430 20 HOH HOH . I 5 HOH A 31 431 82 HOH HOH . I 5 HOH A 32 432 94 HOH HOH . I 5 HOH A 33 433 86 HOH HOH . I 5 HOH A 34 434 44 HOH HOH . I 5 HOH A 35 435 28 HOH HOH . I 5 HOH A 36 436 18 HOH HOH . I 5 HOH A 37 437 21 HOH HOH . I 5 HOH A 38 438 53 HOH HOH . I 5 HOH A 39 439 19 HOH HOH . I 5 HOH A 40 440 40 HOH HOH . I 5 HOH A 41 441 72 HOH HOH . I 5 HOH A 42 442 41 HOH HOH . I 5 HOH A 43 443 57 HOH HOH . I 5 HOH A 44 444 23 HOH HOH . I 5 HOH A 45 445 105 HOH HOH . I 5 HOH A 46 446 77 HOH HOH . I 5 HOH A 47 447 62 HOH HOH . I 5 HOH A 48 448 56 HOH HOH . I 5 HOH A 49 449 109 HOH HOH . I 5 HOH A 50 450 122 HOH HOH . I 5 HOH A 51 451 74 HOH HOH . I 5 HOH A 52 452 63 HOH HOH . I 5 HOH A 53 453 38 HOH HOH . I 5 HOH A 54 454 32 HOH HOH . I 5 HOH A 55 455 10 HOH HOH . I 5 HOH A 56 456 93 HOH HOH . I 5 HOH A 57 457 78 HOH HOH . I 5 HOH A 58 458 29 HOH HOH . I 5 HOH A 59 459 110 HOH HOH . I 5 HOH A 60 460 92 HOH HOH . I 5 HOH A 61 461 47 HOH HOH . I 5 HOH A 62 462 112 HOH HOH . I 5 HOH A 63 463 104 HOH HOH . I 5 HOH A 64 464 67 HOH HOH . I 5 HOH A 65 465 71 HOH HOH . I 5 HOH A 66 466 115 HOH HOH . I 5 HOH A 67 467 80 HOH HOH . J 5 HOH B 1 401 5 HOH HOH . J 5 HOH B 2 402 98 HOH HOH . J 5 HOH B 3 403 118 HOH HOH . J 5 HOH B 4 404 90 HOH HOH . J 5 HOH B 5 405 87 HOH HOH . J 5 HOH B 6 406 84 HOH HOH . J 5 HOH B 7 407 35 HOH HOH . J 5 HOH B 8 408 60 HOH HOH . J 5 HOH B 9 409 66 HOH HOH . J 5 HOH B 10 410 120 HOH HOH . J 5 HOH B 11 411 39 HOH HOH . J 5 HOH B 12 412 22 HOH HOH . J 5 HOH B 13 413 59 HOH HOH . J 5 HOH B 14 414 8 HOH HOH . J 5 HOH B 15 415 1 HOH HOH . J 5 HOH B 16 416 36 HOH HOH . J 5 HOH B 17 417 55 HOH HOH . J 5 HOH B 18 418 2 HOH HOH . J 5 HOH B 19 419 50 HOH HOH . J 5 HOH B 20 420 58 HOH HOH . J 5 HOH B 21 421 11 HOH HOH . J 5 HOH B 22 422 13 HOH HOH . J 5 HOH B 23 423 27 HOH HOH . J 5 HOH B 24 424 89 HOH HOH . J 5 HOH B 25 425 75 HOH HOH . J 5 HOH B 26 426 117 HOH HOH . J 5 HOH B 27 427 88 HOH HOH . J 5 HOH B 28 428 101 HOH HOH . J 5 HOH B 29 429 76 HOH HOH . J 5 HOH B 30 430 102 HOH HOH . J 5 HOH B 31 431 113 HOH HOH . J 5 HOH B 32 432 119 HOH HOH . J 5 HOH B 33 433 25 HOH HOH . J 5 HOH B 34 434 33 HOH HOH . J 5 HOH B 35 435 61 HOH HOH . J 5 HOH B 36 436 34 HOH HOH . J 5 HOH B 37 437 48 HOH HOH . J 5 HOH B 38 438 107 HOH HOH . J 5 HOH B 39 439 37 HOH HOH . J 5 HOH B 40 440 73 HOH HOH . J 5 HOH B 41 441 43 HOH HOH . J 5 HOH B 42 442 106 HOH HOH . J 5 HOH B 43 443 68 HOH HOH . J 5 HOH B 44 444 85 HOH HOH . J 5 HOH B 45 445 108 HOH HOH . J 5 HOH B 46 446 97 HOH HOH . J 5 HOH B 47 447 114 HOH HOH . J 5 HOH B 48 448 99 HOH HOH . J 5 HOH B 49 449 116 HOH HOH . J 5 HOH B 50 450 100 HOH HOH . J 5 HOH B 51 451 45 HOH HOH . J 5 HOH B 52 452 24 HOH HOH . J 5 HOH B 53 453 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2HG . . . G 3 -58.276 -37.259 -2.386 1 41.77 ? C1 2HG 301 B 1 HETATM 2 O O1 2HG . . . G 3 -58.096 -36.691 -3.494 1 42.75 ? O1 2HG 301 B 1 HETATM 3 C C2 2HG . . . G 3 -59.556 -38.067 -2.119 1 41.86 ? C2 2HG 301 B 1 HETATM 4 O O2 2HG . . . G 3 -57.371 -37.179 -1.499 1 40.59 ? O2 2HG 301 B 1 HETATM 5 C C3 2HG . . . G 3 -60.13 -37.771 -0.741 1 41.15 ? C3 2HG 301 B 1 HETATM 6 O O3 2HG . . . G 3 -60.595 -37.838 -3.038 1 35.44 ? O3 2HG 301 B 1 HETATM 7 C C4 2HG . . . G 3 -61.2 -38.845 -0.544 1 43.17 ? C4 2HG 301 B 1 HETATM 8 O O4 2HG . . . G 3 -61.574 -37.749 1.598 1 44.94 ? O4 2HG 301 B 1 HETATM 9 C C5 2HG . . . G 3 -61.776 -38.757 0.869 1 47.37 ? C5 2HG 301 B 1 HETATM 10 O O5 2HG . . . G 3 -62.468 -39.714 1.296 1 50.04 ? O5 2HG 301 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 512 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #