data_9JRK # _model_server_result.job_id Q_BXD71VKBjf2x4KBNNfdQ _model_server_result.datetime_utc '2025-03-06 17:06:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jrk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 9JRK # _exptl.entry_id 9JRK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JRK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 235 n y N1 C8A MTX sing 236 n y C2 NA2 MTX sing 237 n n C2 N3 MTX sing 238 n y NA2 HN21 MTX sing 239 n n NA2 HN22 MTX sing 240 n n N3 C4 MTX doub 241 n y C4 NA4 MTX sing 242 n n C4 C4A MTX sing 243 n y NA4 HN41 MTX sing 244 n n NA4 HN42 MTX sing 245 n n C4A N5 MTX sing 246 n y C4A C8A MTX doub 247 n y N5 C6 MTX doub 248 n y C6 C7 MTX sing 249 n y C6 C9 MTX sing 250 n n C7 N8 MTX doub 251 n y C7 H7 MTX sing 252 n n N8 C8A MTX sing 253 n y C9 N10 MTX sing 254 n n C9 H91 MTX sing 255 n n C9 H92 MTX sing 256 n n N10 CM MTX sing 257 n n N10 C14 MTX sing 258 n n CM HM1 MTX sing 259 n n CM HM2 MTX sing 260 n n CM HM3 MTX sing 261 n n C11 C12 MTX doub 262 n y C11 C16 MTX sing 263 n y C11 C MTX sing 264 n n C12 C13 MTX sing 265 n y C12 H12 MTX sing 266 n n C13 C14 MTX doub 267 n y C13 H13 MTX sing 268 n n C14 C15 MTX sing 269 n y C15 C16 MTX doub 270 n y C15 H15 MTX sing 271 n n C16 H16 MTX sing 272 n n C O MTX doub 273 n n C N MTX sing 274 n n N CA MTX sing 275 n n N HN MTX sing 276 n n CA CT MTX sing 277 n n CA CB MTX sing 278 n n CA HA MTX sing 279 n n CT O1 MTX doub 280 n n CT O2 MTX sing 281 n n O2 HO2 MTX sing 282 n n CB CG MTX sing 283 n n CB HB1 MTX sing 284 n n CB HB2 MTX sing 285 n n CG CD MTX sing 286 n n CG HG1 MTX sing 287 n n CG HG2 MTX sing 288 n n CD OE1 MTX doub 289 n n CD OE2 MTX sing 290 n n OE2 HOE2 MTX sing 291 n n # _atom_sites.entry_id 9JRK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id MTX _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 701 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id MTX _pdbx_nonpoly_scheme.auth_mon_id MTX _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . B 2 134.152 129.822 90.394 1 83.25 ? N1 MTX 701 A 1 HETATM 2 C C2 MTX . . . B 2 135.489 129.839 90.191 1 86.18 ? C2 MTX 701 A 1 HETATM 3 N NA2 MTX . . . B 2 136.033 129.791 88.85 1 82.95 ? NA2 MTX 701 A 1 HETATM 4 N N3 MTX . . . B 2 136.331 129.913 91.237 1 80.35 ? N3 MTX 701 A 1 HETATM 5 C C4 MTX . . . B 2 135.838 129.958 92.445 1 77.39 ? C4 MTX 701 A 1 HETATM 6 N NA4 MTX . . . B 2 136.721 130.039 93.573 1 76.39 ? NA4 MTX 701 A 1 HETATM 7 C C4A MTX . . . B 2 134.499 129.94 92.652 1 81.61 ? C4A MTX 701 A 1 HETATM 8 N N5 MTX . . . B 2 134.036 129.989 93.9 1 80.18 ? N5 MTX 701 A 1 HETATM 9 C C6 MTX . . . B 2 132.749 129.96 94.121 1 79.61 ? C6 MTX 701 A 1 HETATM 10 C C7 MTX . . . B 2 131.875 129.903 93.065 1 80.32 ? C7 MTX 701 A 1 HETATM 11 N N8 MTX . . . B 2 132.342 129.858 91.838 1 76.29 ? N8 MTX 701 A 1 HETATM 12 C C8A MTX . . . B 2 133.664 129.875 91.628 1 81.23 ? C8A MTX 701 A 1 HETATM 13 C C9 MTX . . . B 2 131.969 129.99 95.428 1 78.33 ? C9 MTX 701 A 1 HETATM 14 N N10 MTX . . . B 2 132.188 128.865 96.357 1 83.73 ? N10 MTX 701 A 1 HETATM 15 C CM MTX . . . B 2 132.761 127.537 96.192 1 80.94 ? CM MTX 701 A 1 HETATM 16 C C11 MTX . . . B 2 131.017 129.361 100.205 1 80.65 ? C11 MTX 701 A 1 HETATM 17 C C12 MTX . . . B 2 130.34 130.066 99.243 1 79.12 ? C12 MTX 701 A 1 HETATM 18 C C13 MTX . . . B 2 130.722 129.896 97.943 1 82.13 ? C13 MTX 701 A 1 HETATM 19 C C14 MTX . . . B 2 131.768 129.056 97.686 1 84.71 ? C14 MTX 701 A 1 HETATM 20 C C15 MTX . . . B 2 132.437 128.347 98.64 1 82.78 ? C15 MTX 701 A 1 HETATM 21 C C16 MTX . . . B 2 132.055 128.504 99.943 1 80.65 ? C16 MTX 701 A 1 HETATM 22 C C MTX . . . B 2 130.57 129.561 101.617 1 82.94 ? C MTX 701 A 1 HETATM 23 O O MTX . . . B 2 130.842 130.605 102.06 1 86.27 ? O MTX 701 A 1 HETATM 24 N N MTX . . . B 2 129.861 128.439 102.235 1 82.79 ? N MTX 701 A 1 HETATM 25 C CA MTX . . . B 2 129.261 128.286 103.535 1 82.88 ? CA MTX 701 A 1 HETATM 26 C CT MTX . . . B 2 128.105 127.363 103.235 1 82.47 ? CT MTX 701 A 1 HETATM 27 O O1 MTX . . . B 2 128.076 126.772 102.128 1 80.83 ? O1 MTX 701 A 1 HETATM 28 O O2 MTX . . . B 2 127.186 127.202 104.068 1 81.28 ? O2 MTX 701 A 1 HETATM 29 C CB MTX . . . B 2 128.72 129.605 104.053 1 82.36 ? CB MTX 701 A 1 HETATM 30 C CG MTX . . . B 2 129.489 129.974 105.321 1 82.68 ? CG MTX 701 A 1 HETATM 31 C CD MTX . . . B 2 130.666 130.906 105.03 1 84.38 ? CD MTX 701 A 1 HETATM 32 O OE1 MTX . . . B 2 130.473 132.045 104.554 1 83.31 ? OE1 MTX 701 A 1 HETATM 33 O OE2 MTX . . . B 2 131.846 130.549 105.237 1 79.23 ? OE2 MTX 701 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #