data_9JXU # _model_server_result.job_id RwujzWEFE8e4IoP1b-q74w _model_server_result.datetime_utc '2025-03-06 07:02:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jxu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 9JXU # _exptl.entry_id 9JXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.33 _cell.angle_gamma 90 _cell.entry_id 9JXU _cell.length_a 53.642 _cell.length_b 101.292 _cell.length_c 63.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 M N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 9JXU _atom_sites.fract_transf_matrix[1][1] 0.018642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005817 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PGE A 1 401 401 PGE PGE . D 3 EDO A 1 402 402 EDO EDO . E 4 PEG A 1 403 403 PEG PEG . F 3 EDO A 1 404 501 EDO EDO . G 3 EDO A 1 405 502 EDO EDO . H 3 EDO A 1 406 601 EDO EDO . I 3 EDO A 1 407 602 EDO EDO . J 5 SO4 A 1 408 1 SO4 SO4 . K 5 SO4 A 1 409 3 SO4 SO4 . L 5 SO4 A 1 410 4 SO4 SO4 . M 3 EDO B 1 401 401 EDO EDO . N 5 SO4 B 1 402 2 SO4 SO4 . O 6 HOH A 1 501 35 HOH HOH . O 6 HOH A 2 502 29 HOH HOH . O 6 HOH A 3 503 26 HOH HOH . O 6 HOH A 4 504 1 HOH HOH . O 6 HOH A 5 505 59 HOH HOH . O 6 HOH A 6 506 78 HOH HOH . O 6 HOH A 7 507 54 HOH HOH . O 6 HOH A 8 508 11 HOH HOH . O 6 HOH A 9 509 66 HOH HOH . O 6 HOH A 10 510 24 HOH HOH . O 6 HOH A 11 511 36 HOH HOH . O 6 HOH A 12 512 71 HOH HOH . O 6 HOH A 13 513 8 HOH HOH . O 6 HOH A 14 514 7 HOH HOH . O 6 HOH A 15 515 52 HOH HOH . O 6 HOH A 16 516 34 HOH HOH . O 6 HOH A 17 517 64 HOH HOH . O 6 HOH A 18 518 58 HOH HOH . O 6 HOH A 19 519 40 HOH HOH . O 6 HOH A 20 520 43 HOH HOH . O 6 HOH A 21 521 25 HOH HOH . O 6 HOH A 22 522 33 HOH HOH . O 6 HOH A 23 523 85 HOH HOH . O 6 HOH A 24 524 14 HOH HOH . O 6 HOH A 25 525 73 HOH HOH . O 6 HOH A 26 526 23 HOH HOH . O 6 HOH A 27 527 12 HOH HOH . O 6 HOH A 28 528 42 HOH HOH . O 6 HOH A 29 529 4 HOH HOH . O 6 HOH A 30 530 70 HOH HOH . O 6 HOH A 31 531 72 HOH HOH . O 6 HOH A 32 532 45 HOH HOH . O 6 HOH A 33 533 32 HOH HOH . O 6 HOH A 34 534 41 HOH HOH . O 6 HOH A 35 535 61 HOH HOH . O 6 HOH A 36 536 27 HOH HOH . O 6 HOH A 37 537 60 HOH HOH . O 6 HOH A 38 538 74 HOH HOH . O 6 HOH A 39 539 55 HOH HOH . P 6 HOH B 1 501 46 HOH HOH . P 6 HOH B 2 502 19 HOH HOH . P 6 HOH B 3 503 75 HOH HOH . P 6 HOH B 4 504 10 HOH HOH . P 6 HOH B 5 505 28 HOH HOH . P 6 HOH B 6 506 57 HOH HOH . P 6 HOH B 7 507 77 HOH HOH . P 6 HOH B 8 508 49 HOH HOH . P 6 HOH B 9 509 56 HOH HOH . P 6 HOH B 10 510 88 HOH HOH . P 6 HOH B 11 511 44 HOH HOH . P 6 HOH B 12 512 5 HOH HOH . P 6 HOH B 13 513 84 HOH HOH . P 6 HOH B 14 514 51 HOH HOH . P 6 HOH B 15 515 22 HOH HOH . P 6 HOH B 16 516 2 HOH HOH . P 6 HOH B 17 517 3 HOH HOH . P 6 HOH B 18 518 62 HOH HOH . P 6 HOH B 19 519 67 HOH HOH . P 6 HOH B 20 520 38 HOH HOH . P 6 HOH B 21 521 30 HOH HOH . P 6 HOH B 22 522 86 HOH HOH . P 6 HOH B 23 523 65 HOH HOH . P 6 HOH B 24 524 31 HOH HOH . P 6 HOH B 25 525 47 HOH HOH . P 6 HOH B 26 526 13 HOH HOH . P 6 HOH B 27 527 6 HOH HOH . P 6 HOH B 28 528 80 HOH HOH . P 6 HOH B 29 529 9 HOH HOH . P 6 HOH B 30 530 37 HOH HOH . P 6 HOH B 31 531 21 HOH HOH . P 6 HOH B 32 532 20 HOH HOH . P 6 HOH B 33 533 89 HOH HOH . P 6 HOH B 34 534 81 HOH HOH . P 6 HOH B 35 535 82 HOH HOH . P 6 HOH B 36 536 18 HOH HOH . P 6 HOH B 37 537 15 HOH HOH . P 6 HOH B 38 538 87 HOH HOH . P 6 HOH B 39 539 17 HOH HOH . P 6 HOH B 40 540 79 HOH HOH . P 6 HOH B 41 541 48 HOH HOH . P 6 HOH B 42 542 39 HOH HOH . P 6 HOH B 43 543 68 HOH HOH . P 6 HOH B 44 544 50 HOH HOH . P 6 HOH B 45 545 76 HOH HOH . P 6 HOH B 46 546 69 HOH HOH . P 6 HOH B 47 547 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 47.725 -12.437 10.849 1 55.73 ? C1 EDO 405 A 1 HETATM 2 O O1 EDO . . . G 3 48.491 -11.274 10.4 1 47.64 ? O1 EDO 405 A 1 HETATM 3 C C2 EDO . . . G 3 46.534 -12.359 11.791 1 40.05 ? C2 EDO 405 A 1 HETATM 4 O O2 EDO . . . G 3 46.575 -12.785 13.212 1 37.65 ? O2 EDO 405 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #