data_9JYP
#
_model_server_result.job_id            elx79U3kdvtOFFPwmFg3RA 
_model_server_result.datetime_utc      '2025-08-28 09:00:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9jyp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    9JYP 
#
_exptl.entry_id    9JYP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              184.212 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-oxidanylidene-4-thiophen-2-yl-butanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9JYP 
_cell.length_a            69.668 
_cell.length_b            69.668 
_cell.length_c            79.223 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9JYP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C8 H8 O3 S' 
_chem_comp.formula_weight    184.212 
_chem_comp.id                A1EDZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-oxidanylidene-4-thiophen-2-yl-butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '3-(2-Thenoyl)propionic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 A1EDZ doub 1 n n 
C1 O2 A1EDZ sing 2 n n 
C1 C2 A1EDZ sing 3 n n 
O3 C4 A1EDZ doub 4 n n 
C2 C3 A1EDZ sing 5 n n 
C4 C5 A1EDZ sing 6 n n 
C4 C3 A1EDZ sing 7 n n 
S1 C5 A1EDZ sing 8 n y 
S1 C8 A1EDZ sing 9 n y 
C5 C6 A1EDZ doub 10 n y 
C8 C7 A1EDZ doub 11 n y 
C6 C7 A1EDZ sing 12 n y 
C6 H2 A1EDZ sing 13 n n 
C7 H4 A1EDZ sing 14 n n 
C8 H6 A1EDZ sing 15 n n 
C2 H8 A1EDZ sing 16 n n 
C2 H9 A1EDZ sing 17 n n 
C3 H10 A1EDZ sing 18 n n 
C3 H11 A1EDZ sing 19 n n 
O2 H12 A1EDZ sing 20 n n 
#
_atom_sites.entry_id                     9JYP 
_atom_sites.fract_transf_matrix[1][1]    0.014354 
_atom_sites.fract_transf_matrix[1][2]    0.008287 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012623 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1EDZ A 1 301 301 A1EDZ LIG . 
C 3 P33 A 1 302 302 P33 PE4 . 
D 4 SO4 A 1 303 1 SO4 SO4 . 
E 4 SO4 A 1 304 2 SO4 SO4 . 
F 5 CL A 1 305 1 CL CL . 
G 6 HOH A 1 401 72 HOH HOH . 
G 6 HOH A 2 402 173 HOH HOH . 
G 6 HOH A 3 403 30 HOH HOH . 
G 6 HOH A 4 404 99 HOH HOH . 
G 6 HOH A 5 405 139 HOH HOH . 
G 6 HOH A 6 406 141 HOH HOH . 
G 6 HOH A 7 407 88 HOH HOH . 
G 6 HOH A 8 408 53 HOH HOH . 
G 6 HOH A 9 409 13 HOH HOH . 
G 6 HOH A 10 410 169 HOH HOH . 
G 6 HOH A 11 411 137 HOH HOH . 
G 6 HOH A 12 412 42 HOH HOH . 
G 6 HOH A 13 413 131 HOH HOH . 
G 6 HOH A 14 414 7 HOH HOH . 
G 6 HOH A 15 415 47 HOH HOH . 
G 6 HOH A 16 416 151 HOH HOH . 
G 6 HOH A 17 417 120 HOH HOH . 
G 6 HOH A 18 418 77 HOH HOH . 
G 6 HOH A 19 419 50 HOH HOH . 
G 6 HOH A 20 420 154 HOH HOH . 
G 6 HOH A 21 421 172 HOH HOH . 
G 6 HOH A 22 422 41 HOH HOH . 
G 6 HOH A 23 423 5 HOH HOH . 
G 6 HOH A 24 424 200 HOH HOH . 
G 6 HOH A 25 425 16 HOH HOH . 
G 6 HOH A 26 426 58 HOH HOH . 
G 6 HOH A 27 427 46 HOH HOH . 
G 6 HOH A 28 428 45 HOH HOH . 
G 6 HOH A 29 429 23 HOH HOH . 
G 6 HOH A 30 430 32 HOH HOH . 
G 6 HOH A 31 431 148 HOH HOH . 
G 6 HOH A 32 432 117 HOH HOH . 
G 6 HOH A 33 433 40 HOH HOH . 
G 6 HOH A 34 434 19 HOH HOH . 
G 6 HOH A 35 435 103 HOH HOH . 
G 6 HOH A 36 436 182 HOH HOH . 
G 6 HOH A 37 437 61 HOH HOH . 
G 6 HOH A 38 438 135 HOH HOH . 
G 6 HOH A 39 439 111 HOH HOH . 
G 6 HOH A 40 440 70 HOH HOH . 
G 6 HOH A 41 441 20 HOH HOH . 
G 6 HOH A 42 442 6 HOH HOH . 
G 6 HOH A 43 443 17 HOH HOH . 
G 6 HOH A 44 444 18 HOH HOH . 
G 6 HOH A 45 445 81 HOH HOH . 
G 6 HOH A 46 446 12 HOH HOH . 
G 6 HOH A 47 447 48 HOH HOH . 
G 6 HOH A 48 448 38 HOH HOH . 
G 6 HOH A 49 449 186 HOH HOH . 
G 6 HOH A 50 450 146 HOH HOH . 
G 6 HOH A 51 451 52 HOH HOH . 
G 6 HOH A 52 452 8 HOH HOH . 
G 6 HOH A 53 453 27 HOH HOH . 
G 6 HOH A 54 454 75 HOH HOH . 
G 6 HOH A 55 455 4 HOH HOH . 
G 6 HOH A 56 456 119 HOH HOH . 
G 6 HOH A 57 457 64 HOH HOH . 
G 6 HOH A 58 458 73 HOH HOH . 
G 6 HOH A 59 459 56 HOH HOH . 
G 6 HOH A 60 460 39 HOH HOH . 
G 6 HOH A 61 461 62 HOH HOH . 
G 6 HOH A 62 462 11 HOH HOH . 
G 6 HOH A 63 463 43 HOH HOH . 
G 6 HOH A 64 464 110 HOH HOH . 
G 6 HOH A 65 465 36 HOH HOH . 
G 6 HOH A 66 466 78 HOH HOH . 
G 6 HOH A 67 467 91 HOH HOH . 
G 6 HOH A 68 468 127 HOH HOH . 
G 6 HOH A 69 469 2 HOH HOH . 
G 6 HOH A 70 470 194 HOH HOH . 
G 6 HOH A 71 471 10 HOH HOH . 
G 6 HOH A 72 472 67 HOH HOH . 
G 6 HOH A 73 473 66 HOH HOH . 
G 6 HOH A 74 474 15 HOH HOH . 
G 6 HOH A 75 475 29 HOH HOH . 
G 6 HOH A 76 476 184 HOH HOH . 
G 6 HOH A 77 477 25 HOH HOH . 
G 6 HOH A 78 478 98 HOH HOH . 
G 6 HOH A 79 479 167 HOH HOH . 
G 6 HOH A 80 480 37 HOH HOH . 
G 6 HOH A 81 481 9 HOH HOH . 
G 6 HOH A 82 482 152 HOH HOH . 
G 6 HOH A 83 483 55 HOH HOH . 
G 6 HOH A 84 484 102 HOH HOH . 
G 6 HOH A 85 485 59 HOH HOH . 
G 6 HOH A 86 486 44 HOH HOH . 
G 6 HOH A 87 487 49 HOH HOH . 
G 6 HOH A 88 488 51 HOH HOH . 
G 6 HOH A 89 489 130 HOH HOH . 
G 6 HOH A 90 490 34 HOH HOH . 
G 6 HOH A 91 491 163 HOH HOH . 
G 6 HOH A 92 492 76 HOH HOH . 
G 6 HOH A 93 493 105 HOH HOH . 
G 6 HOH A 94 494 107 HOH HOH . 
G 6 HOH A 95 495 204 HOH HOH . 
G 6 HOH A 96 496 196 HOH HOH . 
G 6 HOH A 97 497 33 HOH HOH . 
G 6 HOH A 98 498 1 HOH HOH . 
G 6 HOH A 99 499 183 HOH HOH . 
G 6 HOH A 100 500 92 HOH HOH . 
G 6 HOH A 101 501 116 HOH HOH . 
G 6 HOH A 102 502 79 HOH HOH . 
G 6 HOH A 103 503 24 HOH HOH . 
G 6 HOH A 104 504 140 HOH HOH . 
G 6 HOH A 105 505 153 HOH HOH . 
G 6 HOH A 106 506 165 HOH HOH . 
G 6 HOH A 107 507 170 HOH HOH . 
G 6 HOH A 108 508 206 HOH HOH . 
G 6 HOH A 109 509 109 HOH HOH . 
G 6 HOH A 110 510 118 HOH HOH . 
G 6 HOH A 111 511 126 HOH HOH . 
G 6 HOH A 112 512 26 HOH HOH . 
G 6 HOH A 113 513 60 HOH HOH . 
G 6 HOH A 114 514 96 HOH HOH . 
G 6 HOH A 115 515 195 HOH HOH . 
G 6 HOH A 116 516 132 HOH HOH . 
G 6 HOH A 117 517 113 HOH HOH . 
G 6 HOH A 118 518 123 HOH HOH . 
G 6 HOH A 119 519 157 HOH HOH . 
G 6 HOH A 120 520 158 HOH HOH . 
G 6 HOH A 121 521 190 HOH HOH . 
G 6 HOH A 122 522 89 HOH HOH . 
G 6 HOH A 123 523 82 HOH HOH . 
G 6 HOH A 124 524 199 HOH HOH . 
G 6 HOH A 125 525 136 HOH HOH . 
G 6 HOH A 126 526 14 HOH HOH . 
G 6 HOH A 127 527 74 HOH HOH . 
G 6 HOH A 128 528 133 HOH HOH . 
G 6 HOH A 129 529 86 HOH HOH . 
G 6 HOH A 130 530 71 HOH HOH . 
G 6 HOH A 131 531 203 HOH HOH . 
G 6 HOH A 132 532 187 HOH HOH . 
G 6 HOH A 133 533 180 HOH HOH . 
G 6 HOH A 134 534 178 HOH HOH . 
G 6 HOH A 135 535 122 HOH HOH . 
G 6 HOH A 136 536 57 HOH HOH . 
G 6 HOH A 137 537 121 HOH HOH . 
G 6 HOH A 138 538 164 HOH HOH . 
G 6 HOH A 139 539 95 HOH HOH . 
G 6 HOH A 140 540 128 HOH HOH . 
G 6 HOH A 141 541 35 HOH HOH . 
G 6 HOH A 142 542 65 HOH HOH . 
G 6 HOH A 143 543 155 HOH HOH . 
G 6 HOH A 144 544 176 HOH HOH . 
G 6 HOH A 145 545 22 HOH HOH . 
G 6 HOH A 146 546 201 HOH HOH . 
G 6 HOH A 147 547 134 HOH HOH . 
G 6 HOH A 148 548 3 HOH HOH . 
G 6 HOH A 149 549 207 HOH HOH . 
G 6 HOH A 150 550 189 HOH HOH . 
G 6 HOH A 151 551 84 HOH HOH . 
G 6 HOH A 152 552 142 HOH HOH . 
G 6 HOH A 153 553 144 HOH HOH . 
G 6 HOH A 154 554 63 HOH HOH . 
G 6 HOH A 155 555 138 HOH HOH . 
G 6 HOH A 156 556 161 HOH HOH . 
G 6 HOH A 157 557 28 HOH HOH . 
G 6 HOH A 158 558 97 HOH HOH . 
G 6 HOH A 159 559 197 HOH HOH . 
G 6 HOH A 160 560 177 HOH HOH . 
G 6 HOH A 161 561 166 HOH HOH . 
G 6 HOH A 162 562 104 HOH HOH . 
G 6 HOH A 163 563 31 HOH HOH . 
G 6 HOH A 164 564 85 HOH HOH . 
G 6 HOH A 165 565 174 HOH HOH . 
G 6 HOH A 166 566 162 HOH HOH . 
G 6 HOH A 167 567 160 HOH HOH . 
G 6 HOH A 168 568 125 HOH HOH . 
G 6 HOH A 169 569 150 HOH HOH . 
G 6 HOH A 170 570 179 HOH HOH . 
G 6 HOH A 171 571 87 HOH HOH . 
G 6 HOH A 172 572 181 HOH HOH . 
G 6 HOH A 173 573 185 HOH HOH . 
G 6 HOH A 174 574 124 HOH HOH . 
G 6 HOH A 175 575 147 HOH HOH . 
G 6 HOH A 176 576 149 HOH HOH . 
G 6 HOH A 177 577 192 HOH HOH . 
G 6 HOH A 178 578 68 HOH HOH . 
G 6 HOH A 179 579 108 HOH HOH . 
G 6 HOH A 180 580 114 HOH HOH . 
G 6 HOH A 181 581 175 HOH HOH . 
G 6 HOH A 182 582 21 HOH HOH . 
G 6 HOH A 183 583 69 HOH HOH . 
G 6 HOH A 184 584 93 HOH HOH . 
G 6 HOH A 185 585 156 HOH HOH . 
G 6 HOH A 186 586 100 HOH HOH . 
G 6 HOH A 187 587 145 HOH HOH . 
G 6 HOH A 188 588 159 HOH HOH . 
G 6 HOH A 189 589 94 HOH HOH . 
G 6 HOH A 190 590 54 HOH HOH . 
G 6 HOH A 191 591 106 HOH HOH . 
G 6 HOH A 192 592 202 HOH HOH . 
G 6 HOH A 193 593 191 HOH HOH . 
G 6 HOH A 194 594 198 HOH HOH . 
G 6 HOH A 195 595 168 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 A1EDZ . . . B 2 -38.42 13.546 13.673 0.73 39.86 ? C4 A1EDZ 301 A 1 
HETATM 2 C C5 A1EDZ . . . B 2 -38.044 14.791 14.345 0.73 40.54 ? C5 A1EDZ 301 A 1 
HETATM 3 C C6 A1EDZ . . . B 2 -38.589 15.376 15.461 0.73 38.37 ? C6 A1EDZ 301 A 1 
HETATM 4 C C7 A1EDZ . . . B 2 -37.717 16.366 15.975 0.73 37.77 ? C7 A1EDZ 301 A 1 
HETATM 5 C C8 A1EDZ . . . B 2 -36.62 16.563 15.213 0.73 33.99 ? C8 A1EDZ 301 A 1 
HETATM 6 C C1 A1EDZ . . . B 2 -41.083 12.525 12.503 0.73 41.05 ? C1 A1EDZ 301 A 1 
HETATM 7 C C2 A1EDZ . . . B 2 -40.176 11.754 13.445 0.73 39.72 ? C2 A1EDZ 301 A 1 
HETATM 8 C C3 A1EDZ . . . B 2 -39.396 12.648 14.397 0.73 37.82 ? C3 A1EDZ 301 A 1 
HETATM 9 O O1 A1EDZ . . . B 2 -41.65 11.902 11.581 0.73 40.6 ? O1 A1EDZ 301 A 1 
HETATM 10 O O2 A1EDZ . . . B 2 -41.22 13.751 12.698 0.73 42.24 ? O2 A1EDZ 301 A 1 
HETATM 11 O O3 A1EDZ . . . B 2 -37.955 13.267 12.582 0.73 33.47 ? O3 A1EDZ 301 A 1 
HETATM 12 S S1 A1EDZ . . . B 2 -36.682 15.674 13.769 0.73 36.43 ? S1 A1EDZ 301 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#