data_9JYP # _model_server_result.job_id H0avKM-5A5Z5RUL4kdqGeg _model_server_result.datetime_utc '2025-08-28 09:06:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jyp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 9JYP # _exptl.entry_id 9JYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.383 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9JYP _cell.length_a 69.668 _cell.length_b 69.668 _cell.length_c 79.223 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H30 O8' _chem_comp.formula_weight 326.383 _chem_comp.id P33 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HEPTAETHYLENE GLYCOL;PEG330' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 P33 sing 257 n n O22 H22 P33 sing 258 n n C21 C20 P33 sing 259 n n C21 H211 P33 sing 260 n n C21 H212 P33 sing 261 n n C20 O19 P33 sing 262 n n C20 H201 P33 sing 263 n n C20 H202 P33 sing 264 n n O19 C18 P33 sing 265 n n C18 C17 P33 sing 266 n n C18 H181 P33 sing 267 n n C18 H182 P33 sing 268 n n C17 O16 P33 sing 269 n n C17 H171 P33 sing 270 n n C17 H172 P33 sing 271 n n O16 C15 P33 sing 272 n n C15 C14 P33 sing 273 n n C15 H151 P33 sing 274 n n C15 H152 P33 sing 275 n n C14 O13 P33 sing 276 n n C14 H141 P33 sing 277 n n C14 H142 P33 sing 278 n n O13 C12 P33 sing 279 n n C12 C11 P33 sing 280 n n C12 H121 P33 sing 281 n n C12 H122 P33 sing 282 n n C11 O10 P33 sing 283 n n C11 H111 P33 sing 284 n n C11 H112 P33 sing 285 n n O10 C9 P33 sing 286 n n C9 C8 P33 sing 287 n n C9 H91 P33 sing 288 n n C9 H92 P33 sing 289 n n C8 O7 P33 sing 290 n n C8 H81 P33 sing 291 n n C8 H82 P33 sing 292 n n O7 C6 P33 sing 293 n n C6 C5 P33 sing 294 n n C6 H61 P33 sing 295 n n C6 H62 P33 sing 296 n n C5 O4 P33 sing 297 n n C5 H51 P33 sing 298 n n C5 H52 P33 sing 299 n n O4 C3 P33 sing 300 n n C3 C2 P33 sing 301 n n C3 H31 P33 sing 302 n n C3 H32 P33 sing 303 n n C2 O1 P33 sing 304 n n C2 H21 P33 sing 305 n n C2 H22A P33 sing 306 n n O1 HO1 P33 sing 307 n n # _atom_sites.entry_id 9JYP _atom_sites.fract_transf_matrix[1][1] 0.014354 _atom_sites.fract_transf_matrix[1][2] 0.008287 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1EDZ A 1 301 301 A1EDZ LIG . C 3 P33 A 1 302 302 P33 PE4 . D 4 SO4 A 1 303 1 SO4 SO4 . E 4 SO4 A 1 304 2 SO4 SO4 . F 5 CL A 1 305 1 CL CL . G 6 HOH A 1 401 72 HOH HOH . G 6 HOH A 2 402 173 HOH HOH . G 6 HOH A 3 403 30 HOH HOH . G 6 HOH A 4 404 99 HOH HOH . G 6 HOH A 5 405 139 HOH HOH . G 6 HOH A 6 406 141 HOH HOH . G 6 HOH A 7 407 88 HOH HOH . G 6 HOH A 8 408 53 HOH HOH . G 6 HOH A 9 409 13 HOH HOH . G 6 HOH A 10 410 169 HOH HOH . G 6 HOH A 11 411 137 HOH HOH . G 6 HOH A 12 412 42 HOH HOH . G 6 HOH A 13 413 131 HOH HOH . G 6 HOH A 14 414 7 HOH HOH . G 6 HOH A 15 415 47 HOH HOH . G 6 HOH A 16 416 151 HOH HOH . G 6 HOH A 17 417 120 HOH HOH . G 6 HOH A 18 418 77 HOH HOH . G 6 HOH A 19 419 50 HOH HOH . G 6 HOH A 20 420 154 HOH HOH . G 6 HOH A 21 421 172 HOH HOH . G 6 HOH A 22 422 41 HOH HOH . G 6 HOH A 23 423 5 HOH HOH . G 6 HOH A 24 424 200 HOH HOH . G 6 HOH A 25 425 16 HOH HOH . G 6 HOH A 26 426 58 HOH HOH . G 6 HOH A 27 427 46 HOH HOH . G 6 HOH A 28 428 45 HOH HOH . G 6 HOH A 29 429 23 HOH HOH . G 6 HOH A 30 430 32 HOH HOH . G 6 HOH A 31 431 148 HOH HOH . G 6 HOH A 32 432 117 HOH HOH . G 6 HOH A 33 433 40 HOH HOH . G 6 HOH A 34 434 19 HOH HOH . G 6 HOH A 35 435 103 HOH HOH . G 6 HOH A 36 436 182 HOH HOH . G 6 HOH A 37 437 61 HOH HOH . G 6 HOH A 38 438 135 HOH HOH . G 6 HOH A 39 439 111 HOH HOH . G 6 HOH A 40 440 70 HOH HOH . G 6 HOH A 41 441 20 HOH HOH . G 6 HOH A 42 442 6 HOH HOH . G 6 HOH A 43 443 17 HOH HOH . G 6 HOH A 44 444 18 HOH HOH . G 6 HOH A 45 445 81 HOH HOH . G 6 HOH A 46 446 12 HOH HOH . G 6 HOH A 47 447 48 HOH HOH . G 6 HOH A 48 448 38 HOH HOH . G 6 HOH A 49 449 186 HOH HOH . G 6 HOH A 50 450 146 HOH HOH . G 6 HOH A 51 451 52 HOH HOH . G 6 HOH A 52 452 8 HOH HOH . G 6 HOH A 53 453 27 HOH HOH . G 6 HOH A 54 454 75 HOH HOH . G 6 HOH A 55 455 4 HOH HOH . G 6 HOH A 56 456 119 HOH HOH . G 6 HOH A 57 457 64 HOH HOH . G 6 HOH A 58 458 73 HOH HOH . G 6 HOH A 59 459 56 HOH HOH . G 6 HOH A 60 460 39 HOH HOH . G 6 HOH A 61 461 62 HOH HOH . G 6 HOH A 62 462 11 HOH HOH . G 6 HOH A 63 463 43 HOH HOH . G 6 HOH A 64 464 110 HOH HOH . G 6 HOH A 65 465 36 HOH HOH . G 6 HOH A 66 466 78 HOH HOH . G 6 HOH A 67 467 91 HOH HOH . G 6 HOH A 68 468 127 HOH HOH . G 6 HOH A 69 469 2 HOH HOH . G 6 HOH A 70 470 194 HOH HOH . G 6 HOH A 71 471 10 HOH HOH . G 6 HOH A 72 472 67 HOH HOH . G 6 HOH A 73 473 66 HOH HOH . G 6 HOH A 74 474 15 HOH HOH . G 6 HOH A 75 475 29 HOH HOH . G 6 HOH A 76 476 184 HOH HOH . G 6 HOH A 77 477 25 HOH HOH . G 6 HOH A 78 478 98 HOH HOH . G 6 HOH A 79 479 167 HOH HOH . G 6 HOH A 80 480 37 HOH HOH . G 6 HOH A 81 481 9 HOH HOH . G 6 HOH A 82 482 152 HOH HOH . G 6 HOH A 83 483 55 HOH HOH . G 6 HOH A 84 484 102 HOH HOH . G 6 HOH A 85 485 59 HOH HOH . G 6 HOH A 86 486 44 HOH HOH . G 6 HOH A 87 487 49 HOH HOH . G 6 HOH A 88 488 51 HOH HOH . G 6 HOH A 89 489 130 HOH HOH . G 6 HOH A 90 490 34 HOH HOH . G 6 HOH A 91 491 163 HOH HOH . G 6 HOH A 92 492 76 HOH HOH . G 6 HOH A 93 493 105 HOH HOH . G 6 HOH A 94 494 107 HOH HOH . G 6 HOH A 95 495 204 HOH HOH . G 6 HOH A 96 496 196 HOH HOH . G 6 HOH A 97 497 33 HOH HOH . G 6 HOH A 98 498 1 HOH HOH . G 6 HOH A 99 499 183 HOH HOH . G 6 HOH A 100 500 92 HOH HOH . G 6 HOH A 101 501 116 HOH HOH . G 6 HOH A 102 502 79 HOH HOH . G 6 HOH A 103 503 24 HOH HOH . G 6 HOH A 104 504 140 HOH HOH . G 6 HOH A 105 505 153 HOH HOH . G 6 HOH A 106 506 165 HOH HOH . G 6 HOH A 107 507 170 HOH HOH . G 6 HOH A 108 508 206 HOH HOH . G 6 HOH A 109 509 109 HOH HOH . G 6 HOH A 110 510 118 HOH HOH . G 6 HOH A 111 511 126 HOH HOH . G 6 HOH A 112 512 26 HOH HOH . G 6 HOH A 113 513 60 HOH HOH . G 6 HOH A 114 514 96 HOH HOH . G 6 HOH A 115 515 195 HOH HOH . G 6 HOH A 116 516 132 HOH HOH . G 6 HOH A 117 517 113 HOH HOH . G 6 HOH A 118 518 123 HOH HOH . G 6 HOH A 119 519 157 HOH HOH . G 6 HOH A 120 520 158 HOH HOH . G 6 HOH A 121 521 190 HOH HOH . G 6 HOH A 122 522 89 HOH HOH . G 6 HOH A 123 523 82 HOH HOH . G 6 HOH A 124 524 199 HOH HOH . G 6 HOH A 125 525 136 HOH HOH . G 6 HOH A 126 526 14 HOH HOH . G 6 HOH A 127 527 74 HOH HOH . G 6 HOH A 128 528 133 HOH HOH . G 6 HOH A 129 529 86 HOH HOH . G 6 HOH A 130 530 71 HOH HOH . G 6 HOH A 131 531 203 HOH HOH . G 6 HOH A 132 532 187 HOH HOH . G 6 HOH A 133 533 180 HOH HOH . G 6 HOH A 134 534 178 HOH HOH . G 6 HOH A 135 535 122 HOH HOH . G 6 HOH A 136 536 57 HOH HOH . G 6 HOH A 137 537 121 HOH HOH . G 6 HOH A 138 538 164 HOH HOH . G 6 HOH A 139 539 95 HOH HOH . G 6 HOH A 140 540 128 HOH HOH . G 6 HOH A 141 541 35 HOH HOH . G 6 HOH A 142 542 65 HOH HOH . G 6 HOH A 143 543 155 HOH HOH . G 6 HOH A 144 544 176 HOH HOH . G 6 HOH A 145 545 22 HOH HOH . G 6 HOH A 146 546 201 HOH HOH . G 6 HOH A 147 547 134 HOH HOH . G 6 HOH A 148 548 3 HOH HOH . G 6 HOH A 149 549 207 HOH HOH . G 6 HOH A 150 550 189 HOH HOH . G 6 HOH A 151 551 84 HOH HOH . G 6 HOH A 152 552 142 HOH HOH . G 6 HOH A 153 553 144 HOH HOH . G 6 HOH A 154 554 63 HOH HOH . G 6 HOH A 155 555 138 HOH HOH . G 6 HOH A 156 556 161 HOH HOH . G 6 HOH A 157 557 28 HOH HOH . G 6 HOH A 158 558 97 HOH HOH . G 6 HOH A 159 559 197 HOH HOH . G 6 HOH A 160 560 177 HOH HOH . G 6 HOH A 161 561 166 HOH HOH . G 6 HOH A 162 562 104 HOH HOH . G 6 HOH A 163 563 31 HOH HOH . G 6 HOH A 164 564 85 HOH HOH . G 6 HOH A 165 565 174 HOH HOH . G 6 HOH A 166 566 162 HOH HOH . G 6 HOH A 167 567 160 HOH HOH . G 6 HOH A 168 568 125 HOH HOH . G 6 HOH A 169 569 150 HOH HOH . G 6 HOH A 170 570 179 HOH HOH . G 6 HOH A 171 571 87 HOH HOH . G 6 HOH A 172 572 181 HOH HOH . G 6 HOH A 173 573 185 HOH HOH . G 6 HOH A 174 574 124 HOH HOH . G 6 HOH A 175 575 147 HOH HOH . G 6 HOH A 176 576 149 HOH HOH . G 6 HOH A 177 577 192 HOH HOH . G 6 HOH A 178 578 68 HOH HOH . G 6 HOH A 179 579 108 HOH HOH . G 6 HOH A 180 580 114 HOH HOH . G 6 HOH A 181 581 175 HOH HOH . G 6 HOH A 182 582 21 HOH HOH . G 6 HOH A 183 583 69 HOH HOH . G 6 HOH A 184 584 93 HOH HOH . G 6 HOH A 185 585 156 HOH HOH . G 6 HOH A 186 586 100 HOH HOH . G 6 HOH A 187 587 145 HOH HOH . G 6 HOH A 188 588 159 HOH HOH . G 6 HOH A 189 589 94 HOH HOH . G 6 HOH A 190 590 54 HOH HOH . G 6 HOH A 191 591 106 HOH HOH . G 6 HOH A 192 592 202 HOH HOH . G 6 HOH A 193 593 191 HOH HOH . G 6 HOH A 194 594 198 HOH HOH . G 6 HOH A 195 595 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 P33 . . . C 3 -21.293 24.889 8.988 1 27.07 ? O22 P33 302 A 1 HETATM 2 C C21 P33 . . . C 3 -22.685 25.193 8.958 1 27.7 ? C21 P33 302 A 1 HETATM 3 C C20 P33 . . . C 3 -23.034 26.168 7.876 1 26.82 ? C20 P33 302 A 1 HETATM 4 O O19 P33 . . . C 3 -22.473 27.441 8.18 1 26.25 ? O19 P33 302 A 1 HETATM 5 C C18 P33 . . . C 3 -22.601 28.362 7.103 1 28.43 ? C18 P33 302 A 1 HETATM 6 C C17 P33 . . . C 3 -22.072 29.698 7.509 1 25.95 ? C17 P33 302 A 1 HETATM 7 O O16 P33 . . . C 3 -20.695 29.588 7.842 1 30.16 ? O16 P33 302 A 1 HETATM 8 C C15 P33 . . . C 3 -20.06 30.852 8.004 1 28.19 ? C15 P33 302 A 1 HETATM 9 C C14 P33 . . . C 3 -18.597 30.643 8.262 1 29.46 ? C14 P33 302 A 1 HETATM 10 O O13 P33 . . . C 3 -18.039 29.851 7.22 1 34.26 ? O13 P33 302 A 1 HETATM 11 C C12 P33 . . . C 3 -16.672 29.524 7.443 1 33.14 ? C12 P33 302 A 1 HETATM 12 C C11 P33 . . . C 3 -16.185 28.696 6.3 1 31.89 ? C11 P33 302 A 1 HETATM 13 O O10 P33 . . . C 3 -16.515 29.363 5.091 1 32.26 ? O10 P33 302 A 1 HETATM 14 C C9 P33 . . . C 3 -16.091 28.659 3.931 1 32.91 ? C9 P33 302 A 1 HETATM 15 C C8 P33 . . . C 3 -16.684 29.304 2.727 1 35.51 ? C8 P33 302 A 1 HETATM 16 O O7 P33 . . . C 3 -18.086 29.444 2.926 1 39.77 ? O7 P33 302 A 1 HETATM 17 C C6 P33 . . . C 3 -18.795 29.773 1.736 1 38.28 ? C6 P33 302 A 1 HETATM 18 C C5 P33 . . . C 3 -19.65 28.606 1.363 1 42.15 ? C5 P33 302 A 1 HETATM 19 O O4 P33 . . . C 3 -21.031 28.945 1.419 1 49.1 ? O4 P33 302 A 1 HETATM 20 C C3 P33 . . . C 3 -21.44 29.501 2.664 1 45.26 ? C3 P33 302 A 1 HETATM 21 C C2 P33 . . . C 3 -22.92 29.299 2.827 1 44.36 ? C2 P33 302 A 1 HETATM 22 O O1 P33 . . . C 3 -23.406 30.113 3.886 1 46.3 ? O1 P33 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #