data_9JYR # _model_server_result.job_id jwK3ZlMMRXyOw_R-6COUtQ _model_server_result.datetime_utc '2025-08-28 09:00:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jyr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 9JYR # _exptl.entry_id 9JYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9JYR _cell.length_a 69.393 _cell.length_b 69.393 _cell.length_c 79.998 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H34 O9' _chem_comp.formula_weight 370.436 _chem_comp.id PE8 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 PE8 sing 258 n n O1 HO1 PE8 sing 259 n n C2 C3 PE8 sing 260 n n C2 H21 PE8 sing 261 n n C2 H22 PE8 sing 262 n n C3 O4 PE8 sing 263 n n C3 H31 PE8 sing 264 n n C3 H32 PE8 sing 265 n n O4 C5 PE8 sing 266 n n C5 C6 PE8 sing 267 n n C5 H51 PE8 sing 268 n n C5 H52 PE8 sing 269 n n C6 O7 PE8 sing 270 n n C6 H61 PE8 sing 271 n n C6 H62 PE8 sing 272 n n O7 C8 PE8 sing 273 n n C8 C9 PE8 sing 274 n n C8 H81 PE8 sing 275 n n C8 H82 PE8 sing 276 n n C9 O10 PE8 sing 277 n n C9 H91 PE8 sing 278 n n C9 H92 PE8 sing 279 n n O10 C11 PE8 sing 280 n n C11 C12 PE8 sing 281 n n C11 H111 PE8 sing 282 n n C11 H112 PE8 sing 283 n n C12 O13 PE8 sing 284 n n C12 H121 PE8 sing 285 n n C12 H122 PE8 sing 286 n n O13 C14 PE8 sing 287 n n C14 C15 PE8 sing 288 n n C14 H141 PE8 sing 289 n n C14 H142 PE8 sing 290 n n C15 O16 PE8 sing 291 n n C15 H151 PE8 sing 292 n n C15 H152 PE8 sing 293 n n O16 C17 PE8 sing 294 n n C17 C18 PE8 sing 295 n n C17 H171 PE8 sing 296 n n C17 H172 PE8 sing 297 n n C18 O19 PE8 sing 298 n n C18 H181 PE8 sing 299 n n C18 H182 PE8 sing 300 n n O19 C20 PE8 sing 301 n n C20 C21 PE8 sing 302 n n C20 H201 PE8 sing 303 n n C20 H202 PE8 sing 304 n n C21 O22 PE8 sing 305 n n C21 H211 PE8 sing 306 n n C21 H212 PE8 sing 307 n n O22 C23 PE8 sing 308 n n C23 C24 PE8 sing 309 n n C23 H231 PE8 sing 310 n n C23 H232 PE8 sing 311 n n C24 O25 PE8 sing 312 n n C24 H241 PE8 sing 313 n n C24 H242 PE8 sing 314 n n O25 H25 PE8 sing 315 n n # _atom_sites.entry_id 9JYR _atom_sites.fract_transf_matrix[1][1] 0.014411 _atom_sites.fract_transf_matrix[1][2] 0.00832 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1ED0 A 1 301 301 A1ED0 LIG . C 2 A1ED0 A 1 302 304 A1ED0 LIG . D 3 PE8 A 1 303 305 PE8 PE8 . E 4 SO4 A 1 304 1 SO4 SO4 . F 4 SO4 A 1 305 2 SO4 SO4 . G 5 HOH A 1 401 34 HOH HOH . G 5 HOH A 2 402 91 HOH HOH . G 5 HOH A 3 403 121 HOH HOH . G 5 HOH A 4 404 98 HOH HOH . G 5 HOH A 5 405 114 HOH HOH . G 5 HOH A 6 406 138 HOH HOH . G 5 HOH A 7 407 107 HOH HOH . G 5 HOH A 8 408 13 HOH HOH . G 5 HOH A 9 409 37 HOH HOH . G 5 HOH A 10 410 82 HOH HOH . G 5 HOH A 11 411 19 HOH HOH . G 5 HOH A 12 412 51 HOH HOH . G 5 HOH A 13 413 64 HOH HOH . G 5 HOH A 14 414 10 HOH HOH . G 5 HOH A 15 415 92 HOH HOH . G 5 HOH A 16 416 75 HOH HOH . G 5 HOH A 17 417 16 HOH HOH . G 5 HOH A 18 418 17 HOH HOH . G 5 HOH A 19 419 85 HOH HOH . G 5 HOH A 20 420 35 HOH HOH . G 5 HOH A 21 421 9 HOH HOH . G 5 HOH A 22 422 80 HOH HOH . G 5 HOH A 23 423 120 HOH HOH . G 5 HOH A 24 424 23 HOH HOH . G 5 HOH A 25 425 4 HOH HOH . G 5 HOH A 26 426 11 HOH HOH . G 5 HOH A 27 427 115 HOH HOH . G 5 HOH A 28 428 87 HOH HOH . G 5 HOH A 29 429 45 HOH HOH . G 5 HOH A 30 430 8 HOH HOH . G 5 HOH A 31 431 22 HOH HOH . G 5 HOH A 32 432 18 HOH HOH . G 5 HOH A 33 433 1 HOH HOH . G 5 HOH A 34 434 29 HOH HOH . G 5 HOH A 35 435 48 HOH HOH . G 5 HOH A 36 436 46 HOH HOH . G 5 HOH A 37 437 69 HOH HOH . G 5 HOH A 38 438 89 HOH HOH . G 5 HOH A 39 439 14 HOH HOH . G 5 HOH A 40 440 113 HOH HOH . G 5 HOH A 41 441 53 HOH HOH . G 5 HOH A 42 442 5 HOH HOH . G 5 HOH A 43 443 100 HOH HOH . G 5 HOH A 44 444 26 HOH HOH . G 5 HOH A 45 445 58 HOH HOH . G 5 HOH A 46 446 125 HOH HOH . G 5 HOH A 47 447 21 HOH HOH . G 5 HOH A 48 448 20 HOH HOH . G 5 HOH A 49 449 7 HOH HOH . G 5 HOH A 50 450 105 HOH HOH . G 5 HOH A 51 451 47 HOH HOH . G 5 HOH A 52 452 30 HOH HOH . G 5 HOH A 53 453 24 HOH HOH . G 5 HOH A 54 454 12 HOH HOH . G 5 HOH A 55 455 144 HOH HOH . G 5 HOH A 56 456 134 HOH HOH . G 5 HOH A 57 457 2 HOH HOH . G 5 HOH A 58 458 102 HOH HOH . G 5 HOH A 59 459 97 HOH HOH . G 5 HOH A 60 460 6 HOH HOH . G 5 HOH A 61 461 39 HOH HOH . G 5 HOH A 62 462 59 HOH HOH . G 5 HOH A 63 463 94 HOH HOH . G 5 HOH A 64 464 49 HOH HOH . G 5 HOH A 65 465 36 HOH HOH . G 5 HOH A 66 466 129 HOH HOH . G 5 HOH A 67 467 52 HOH HOH . G 5 HOH A 68 468 42 HOH HOH . G 5 HOH A 69 469 57 HOH HOH . G 5 HOH A 70 470 63 HOH HOH . G 5 HOH A 71 471 27 HOH HOH . G 5 HOH A 72 472 15 HOH HOH . G 5 HOH A 73 473 28 HOH HOH . G 5 HOH A 74 474 133 HOH HOH . G 5 HOH A 75 475 83 HOH HOH . G 5 HOH A 76 476 84 HOH HOH . G 5 HOH A 77 477 79 HOH HOH . G 5 HOH A 78 478 3 HOH HOH . G 5 HOH A 79 479 50 HOH HOH . G 5 HOH A 80 480 142 HOH HOH . G 5 HOH A 81 481 143 HOH HOH . G 5 HOH A 82 482 73 HOH HOH . G 5 HOH A 83 483 112 HOH HOH . G 5 HOH A 84 484 54 HOH HOH . G 5 HOH A 85 485 76 HOH HOH . G 5 HOH A 86 486 103 HOH HOH . G 5 HOH A 87 487 111 HOH HOH . G 5 HOH A 88 488 61 HOH HOH . G 5 HOH A 89 489 104 HOH HOH . G 5 HOH A 90 490 81 HOH HOH . G 5 HOH A 91 491 43 HOH HOH . G 5 HOH A 92 492 78 HOH HOH . G 5 HOH A 93 493 66 HOH HOH . G 5 HOH A 94 494 116 HOH HOH . G 5 HOH A 95 495 68 HOH HOH . G 5 HOH A 96 496 86 HOH HOH . G 5 HOH A 97 497 77 HOH HOH . G 5 HOH A 98 498 60 HOH HOH . G 5 HOH A 99 499 99 HOH HOH . G 5 HOH A 100 500 41 HOH HOH . G 5 HOH A 101 501 110 HOH HOH . G 5 HOH A 102 502 44 HOH HOH . G 5 HOH A 103 503 62 HOH HOH . G 5 HOH A 104 504 109 HOH HOH . G 5 HOH A 105 505 122 HOH HOH . G 5 HOH A 106 506 31 HOH HOH . G 5 HOH A 107 507 55 HOH HOH . G 5 HOH A 108 508 108 HOH HOH . G 5 HOH A 109 509 90 HOH HOH . G 5 HOH A 110 510 40 HOH HOH . G 5 HOH A 111 511 95 HOH HOH . G 5 HOH A 112 512 136 HOH HOH . G 5 HOH A 113 513 101 HOH HOH . G 5 HOH A 114 514 139 HOH HOH . G 5 HOH A 115 515 118 HOH HOH . G 5 HOH A 116 516 71 HOH HOH . G 5 HOH A 117 517 93 HOH HOH . G 5 HOH A 118 518 67 HOH HOH . G 5 HOH A 119 519 33 HOH HOH . G 5 HOH A 120 520 70 HOH HOH . G 5 HOH A 121 521 72 HOH HOH . G 5 HOH A 122 522 88 HOH HOH . G 5 HOH A 123 523 106 HOH HOH . G 5 HOH A 124 524 25 HOH HOH . G 5 HOH A 125 525 135 HOH HOH . G 5 HOH A 126 526 119 HOH HOH . G 5 HOH A 127 527 74 HOH HOH . G 5 HOH A 128 528 132 HOH HOH . G 5 HOH A 129 529 96 HOH HOH . G 5 HOH A 130 530 141 HOH HOH . G 5 HOH A 131 531 32 HOH HOH . G 5 HOH A 132 532 65 HOH HOH . G 5 HOH A 133 533 124 HOH HOH . G 5 HOH A 134 534 117 HOH HOH . G 5 HOH A 135 535 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PE8 . . . D 3 -20.887 23.494 11.621 1 32.99 ? O1 PE8 303 A 1 HETATM 2 C C2 PE8 . . . D 3 -20.245 24.205 10.603 1 35.6 ? C2 PE8 303 A 1 HETATM 3 C C3 PE8 . . . D 3 -21.187 24.594 9.513 1 21.49 ? C3 PE8 303 A 1 HETATM 4 O O4 PE8 . . . D 3 -22.257 25.368 10.024 1 38.01 ? O4 PE8 303 A 1 HETATM 5 C C5 PE8 . . . D 3 -23.342 25.468 9.118 1 30.78 ? C5 PE8 303 A 1 HETATM 6 C C6 PE8 . . . D 3 -22.946 26.276 7.944 1 26.32 ? C6 PE8 303 A 1 HETATM 7 O O7 PE8 . . . D 3 -22.564 27.573 8.374 1 22.49 ? O7 PE8 303 A 1 HETATM 8 C C8 PE8 . . . D 3 -22.7 28.546 7.35 1 27.58 ? C8 PE8 303 A 1 HETATM 9 C C9 PE8 . . . D 3 -22.076 29.827 7.791 1 23.4 ? C9 PE8 303 A 1 HETATM 10 O O10 PE8 . . . D 3 -20.69 29.628 8.026 1 26.36 ? O10 PE8 303 A 1 HETATM 11 C C11 PE8 . . . D 3 -19.958 30.848 8.093 1 25.29 ? C11 PE8 303 A 1 HETATM 12 C C12 PE8 . . . D 3 -18.484 30.57 8.083 1 29.57 ? C12 PE8 303 A 1 HETATM 13 O O13 PE8 . . . D 3 -18.205 29.497 7.196 1 28.81 ? O13 PE8 303 A 1 HETATM 14 C C14 PE8 . . . D 3 -16.891 29.527 6.655 1 36.15 ? C14 PE8 303 A 1 HETATM 15 C C15 PE8 . . . D 3 -16.96 30.028 5.249 1 28.59 ? C15 PE8 303 A 1 HETATM 16 O O16 PE8 . . . D 3 -16.418 29.071 4.351 1 36.8 ? O16 PE8 303 A 1 HETATM 17 C C17 PE8 . . . D 3 -16.849 29.287 3.013 1 28.78 ? C17 PE8 303 A 1 HETATM 18 C C18 PE8 . . . D 3 -18.331 29.132 2.945 1 24.74 ? C18 PE8 303 A 1 HETATM 19 O O19 PE8 . . . D 3 -18.814 29.579 1.686 1 39.98 ? O19 PE8 303 A 1 HETATM 20 C C20 PE8 . . . D 3 -20.182 29.252 1.476 1 35.68 ? C20 PE8 303 A 1 HETATM 21 C C21 PE8 . . . D 3 -20.397 27.825 1.84 1 31.97 ? C21 PE8 303 A 1 HETATM 22 O O22 PE8 . . . D 3 -21.762 27.471 1.673 1 39.15 ? O22 PE8 303 A 1 HETATM 23 C C23 PE8 . . . D 3 -21.927 26.097 1.346 1 35.3 ? C23 PE8 303 A 1 HETATM 24 C C24 PE8 . . . D 3 -22.187 25.962 -0.116 1 36.92 ? C24 PE8 303 A 1 HETATM 25 O O25 PE8 . . . D 3 -22.018 24.64 -0.573 1 36.76 ? O25 PE8 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #