data_9JYT # _model_server_result.job_id jaCAVuoLngEr5imn_PkiOA _model_server_result.datetime_utc '2025-08-28 04:33:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9JYT # _exptl.entry_id 9JYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9JYT _cell.length_a 68.885 _cell.length_b 68.885 _cell.length_c 79.391 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H34 O9' _chem_comp.formula_weight 370.436 _chem_comp.id PE8 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 PE8 sing 265 n n O1 HO1 PE8 sing 266 n n C2 C3 PE8 sing 267 n n C2 H21 PE8 sing 268 n n C2 H22 PE8 sing 269 n n C3 O4 PE8 sing 270 n n C3 H31 PE8 sing 271 n n C3 H32 PE8 sing 272 n n O4 C5 PE8 sing 273 n n C5 C6 PE8 sing 274 n n C5 H51 PE8 sing 275 n n C5 H52 PE8 sing 276 n n C6 O7 PE8 sing 277 n n C6 H61 PE8 sing 278 n n C6 H62 PE8 sing 279 n n O7 C8 PE8 sing 280 n n C8 C9 PE8 sing 281 n n C8 H81 PE8 sing 282 n n C8 H82 PE8 sing 283 n n C9 O10 PE8 sing 284 n n C9 H91 PE8 sing 285 n n C9 H92 PE8 sing 286 n n O10 C11 PE8 sing 287 n n C11 C12 PE8 sing 288 n n C11 H111 PE8 sing 289 n n C11 H112 PE8 sing 290 n n C12 O13 PE8 sing 291 n n C12 H121 PE8 sing 292 n n C12 H122 PE8 sing 293 n n O13 C14 PE8 sing 294 n n C14 C15 PE8 sing 295 n n C14 H141 PE8 sing 296 n n C14 H142 PE8 sing 297 n n C15 O16 PE8 sing 298 n n C15 H151 PE8 sing 299 n n C15 H152 PE8 sing 300 n n O16 C17 PE8 sing 301 n n C17 C18 PE8 sing 302 n n C17 H171 PE8 sing 303 n n C17 H172 PE8 sing 304 n n C18 O19 PE8 sing 305 n n C18 H181 PE8 sing 306 n n C18 H182 PE8 sing 307 n n O19 C20 PE8 sing 308 n n C20 C21 PE8 sing 309 n n C20 H201 PE8 sing 310 n n C20 H202 PE8 sing 311 n n C21 O22 PE8 sing 312 n n C21 H211 PE8 sing 313 n n C21 H212 PE8 sing 314 n n O22 C23 PE8 sing 315 n n C23 C24 PE8 sing 316 n n C23 H231 PE8 sing 317 n n C23 H232 PE8 sing 318 n n C24 O25 PE8 sing 319 n n C24 H241 PE8 sing 320 n n C24 H242 PE8 sing 321 n n O25 H25 PE8 sing 322 n n # _atom_sites.entry_id 9JYT _atom_sites.fract_transf_matrix[1][1] 0.014517 _atom_sites.fract_transf_matrix[1][2] 0.008381 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PE8 A 1 201 302 PE8 PE8 . C 3 A1EDX A 1 202 303 A1EDX LIG . D 4 SO4 A 1 203 2 SO4 SO4 . E 4 SO4 A 1 204 3 SO4 SO4 . F 5 CL A 1 205 1 CL CL . G 6 HOH A 1 301 40 HOH HOH . G 6 HOH A 2 302 120 HOH HOH . G 6 HOH A 3 303 76 HOH HOH . G 6 HOH A 4 304 128 HOH HOH . G 6 HOH A 5 305 86 HOH HOH . G 6 HOH A 6 306 51 HOH HOH . G 6 HOH A 7 307 44 HOH HOH . G 6 HOH A 8 308 16 HOH HOH . G 6 HOH A 9 309 17 HOH HOH . G 6 HOH A 10 310 31 HOH HOH . G 6 HOH A 11 311 116 HOH HOH . G 6 HOH A 12 312 121 HOH HOH . G 6 HOH A 13 313 74 HOH HOH . G 6 HOH A 14 314 46 HOH HOH . G 6 HOH A 15 315 1 HOH HOH . G 6 HOH A 16 316 122 HOH HOH . G 6 HOH A 17 317 9 HOH HOH . G 6 HOH A 18 318 7 HOH HOH . G 6 HOH A 19 319 33 HOH HOH . G 6 HOH A 20 320 10 HOH HOH . G 6 HOH A 21 321 2 HOH HOH . G 6 HOH A 22 322 25 HOH HOH . G 6 HOH A 23 323 29 HOH HOH . G 6 HOH A 24 324 64 HOH HOH . G 6 HOH A 25 325 66 HOH HOH . G 6 HOH A 26 326 13 HOH HOH . G 6 HOH A 27 327 3 HOH HOH . G 6 HOH A 28 328 59 HOH HOH . G 6 HOH A 29 329 8 HOH HOH . G 6 HOH A 30 330 12 HOH HOH . G 6 HOH A 31 331 32 HOH HOH . G 6 HOH A 32 332 53 HOH HOH . G 6 HOH A 33 333 69 HOH HOH . G 6 HOH A 34 334 79 HOH HOH . G 6 HOH A 35 335 57 HOH HOH . G 6 HOH A 36 336 21 HOH HOH . G 6 HOH A 37 337 41 HOH HOH . G 6 HOH A 38 338 39 HOH HOH . G 6 HOH A 39 339 18 HOH HOH . G 6 HOH A 40 340 34 HOH HOH . G 6 HOH A 41 341 52 HOH HOH . G 6 HOH A 42 342 11 HOH HOH . G 6 HOH A 43 343 134 HOH HOH . G 6 HOH A 44 344 54 HOH HOH . G 6 HOH A 45 345 28 HOH HOH . G 6 HOH A 46 346 110 HOH HOH . G 6 HOH A 47 347 55 HOH HOH . G 6 HOH A 48 348 23 HOH HOH . G 6 HOH A 49 349 19 HOH HOH . G 6 HOH A 50 350 45 HOH HOH . G 6 HOH A 51 351 132 HOH HOH . G 6 HOH A 52 352 4 HOH HOH . G 6 HOH A 53 353 26 HOH HOH . G 6 HOH A 54 354 24 HOH HOH . G 6 HOH A 55 355 36 HOH HOH . G 6 HOH A 56 356 88 HOH HOH . G 6 HOH A 57 357 15 HOH HOH . G 6 HOH A 58 358 115 HOH HOH . G 6 HOH A 59 359 30 HOH HOH . G 6 HOH A 60 360 131 HOH HOH . G 6 HOH A 61 361 63 HOH HOH . G 6 HOH A 62 362 105 HOH HOH . G 6 HOH A 63 363 103 HOH HOH . G 6 HOH A 64 364 35 HOH HOH . G 6 HOH A 65 365 20 HOH HOH . G 6 HOH A 66 366 37 HOH HOH . G 6 HOH A 67 367 93 HOH HOH . G 6 HOH A 68 368 94 HOH HOH . G 6 HOH A 69 369 91 HOH HOH . G 6 HOH A 70 370 97 HOH HOH . G 6 HOH A 71 371 65 HOH HOH . G 6 HOH A 72 372 47 HOH HOH . G 6 HOH A 73 373 62 HOH HOH . G 6 HOH A 74 374 5 HOH HOH . G 6 HOH A 75 375 80 HOH HOH . G 6 HOH A 76 376 98 HOH HOH . G 6 HOH A 77 377 83 HOH HOH . G 6 HOH A 78 378 90 HOH HOH . G 6 HOH A 79 379 82 HOH HOH . G 6 HOH A 80 380 84 HOH HOH . G 6 HOH A 81 381 87 HOH HOH . G 6 HOH A 82 382 73 HOH HOH . G 6 HOH A 83 383 49 HOH HOH . G 6 HOH A 84 384 14 HOH HOH . G 6 HOH A 85 385 68 HOH HOH . G 6 HOH A 86 386 95 HOH HOH . G 6 HOH A 87 387 118 HOH HOH . G 6 HOH A 88 388 108 HOH HOH . G 6 HOH A 89 389 109 HOH HOH . G 6 HOH A 90 390 70 HOH HOH . G 6 HOH A 91 391 135 HOH HOH . G 6 HOH A 92 392 6 HOH HOH . G 6 HOH A 93 393 104 HOH HOH . G 6 HOH A 94 394 72 HOH HOH . G 6 HOH A 95 395 99 HOH HOH . G 6 HOH A 96 396 42 HOH HOH . G 6 HOH A 97 397 50 HOH HOH . G 6 HOH A 98 398 129 HOH HOH . G 6 HOH A 99 399 107 HOH HOH . G 6 HOH A 100 400 127 HOH HOH . G 6 HOH A 101 401 133 HOH HOH . G 6 HOH A 102 402 117 HOH HOH . G 6 HOH A 103 403 85 HOH HOH . G 6 HOH A 104 404 43 HOH HOH . G 6 HOH A 105 405 130 HOH HOH . G 6 HOH A 106 406 112 HOH HOH . G 6 HOH A 107 407 123 HOH HOH . G 6 HOH A 108 408 67 HOH HOH . G 6 HOH A 109 409 92 HOH HOH . G 6 HOH A 110 410 60 HOH HOH . G 6 HOH A 111 411 71 HOH HOH . G 6 HOH A 112 412 61 HOH HOH . G 6 HOH A 113 413 101 HOH HOH . G 6 HOH A 114 414 38 HOH HOH . G 6 HOH A 115 415 81 HOH HOH . G 6 HOH A 116 416 89 HOH HOH . G 6 HOH A 117 417 125 HOH HOH . G 6 HOH A 118 418 96 HOH HOH . G 6 HOH A 119 419 48 HOH HOH . G 6 HOH A 120 420 124 HOH HOH . G 6 HOH A 121 421 27 HOH HOH . G 6 HOH A 122 422 113 HOH HOH . G 6 HOH A 123 423 75 HOH HOH . G 6 HOH A 124 424 22 HOH HOH . G 6 HOH A 125 425 114 HOH HOH . G 6 HOH A 126 426 136 HOH HOH . G 6 HOH A 127 427 119 HOH HOH . G 6 HOH A 128 428 78 HOH HOH . G 6 HOH A 129 429 77 HOH HOH . G 6 HOH A 130 430 56 HOH HOH . G 6 HOH A 131 431 58 HOH HOH . G 6 HOH A 132 432 100 HOH HOH . G 6 HOH A 133 433 111 HOH HOH . G 6 HOH A 134 434 102 HOH HOH . G 6 HOH A 135 435 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PE8 . . . B 2 20.036 -22.673 11.401 1 35.85 ? O1 PE8 201 A 1 HETATM 2 C C2 PE8 . . . B 2 20.796 -23.758 10.945 1 32.75 ? C2 PE8 201 A 1 HETATM 3 C C3 PE8 . . . B 2 20.559 -23.965 9.485 1 32.63 ? C3 PE8 201 A 1 HETATM 4 O O4 PE8 . . . B 2 21.248 -25.103 9.003 1 35.17 ? O4 PE8 201 A 1 HETATM 5 C C5 PE8 . . . B 2 22.657 -24.948 8.919 1 31 ? C5 PE8 201 A 1 HETATM 6 C C6 PE8 . . . B 2 23.113 -25.972 7.934 1 32.75 ? C6 PE8 201 A 1 HETATM 7 O O7 PE8 . . . B 2 22.358 -27.157 8.167 1 31.52 ? O7 PE8 201 A 1 HETATM 8 C C8 PE8 . . . B 2 22.505 -28.112 7.123 1 35.1 ? C8 PE8 201 A 1 HETATM 9 C C9 PE8 . . . B 2 21.89 -29.412 7.537 1 32.69 ? C9 PE8 201 A 1 HETATM 10 O O10 PE8 . . . B 2 20.511 -29.232 7.844 1 33.31 ? O10 PE8 201 A 1 HETATM 11 C C11 PE8 . . . B 2 19.823 -30.47 8.004 1 32.37 ? C11 PE8 201 A 1 HETATM 12 C C12 PE8 . . . B 2 18.373 -30.212 8.277 1 32.91 ? C12 PE8 201 A 1 HETATM 13 O O13 PE8 . . . B 2 17.821 -29.453 7.207 1 34.32 ? O13 PE8 201 A 1 HETATM 14 C C14 PE8 . . . B 2 16.459 -29.1 7.412 1 35.58 ? C14 PE8 201 A 1 HETATM 15 C C15 PE8 . . . B 2 15.975 -28.324 6.229 1 36.06 ? C15 PE8 201 A 1 HETATM 16 O O16 PE8 . . . B 2 16.315 -29.038 5.046 1 36.8 ? O16 PE8 201 A 1 HETATM 17 C C17 PE8 . . . B 2 15.834 -28.416 3.862 1 36.92 ? C17 PE8 201 A 1 HETATM 18 C C18 PE8 . . . B 2 16.471 -29.058 2.673 1 37.49 ? C18 PE8 201 A 1 HETATM 19 O O19 PE8 . . . B 2 17.865 -28.769 2.671 1 42.7 ? O19 PE8 201 A 1 HETATM 20 C C20 PE8 . . . B 2 18.499 -29.061 1.427 1 42.97 ? C20 PE8 201 A 1 HETATM 21 C C21 PE8 . . . B 2 19.871 -28.442 1.401 1 42.03 ? C21 PE8 201 A 1 HETATM 22 O O22 PE8 . . . B 2 20.723 -29.127 2.313 1 51.77 ? O22 PE8 201 A 1 HETATM 23 C C23 PE8 . . . B 2 21.902 -28.395 2.633 1 50.75 ? C23 PE8 201 A 1 HETATM 24 C C24 PE8 . . . B 2 22.648 -29.079 3.746 1 46.19 ? C24 PE8 201 A 1 HETATM 25 O O25 PE8 . . . B 2 23.373 -30.211 3.305 1 51.15 ? O25 PE8 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #