data_9JYT # _model_server_result.job_id n6AYL6iBMFrNNXiR3s72bQ _model_server_result.datetime_utc '2025-08-28 04:31:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 9JYT # _exptl.entry_id 9JYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.217 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Idramantone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9JYT _cell.length_a 68.885 _cell.length_b 68.885 _cell.length_c 79.391 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 O2' _chem_comp.formula_weight 166.217 _chem_comp.id A1EDX _chem_comp.mon_nstd_flag . _chem_comp.name Idramantone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1S,3R)-5-oxidanyladamantan-2-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 A1EDX sing 1 n n C6 C1 A1EDX sing 2 n n C6 C5 A1EDX sing 3 n n C10 C1 A1EDX sing 4 n n C10 C8 A1EDX sing 5 n n O2 C7 A1EDX doub 6 n n C1 C2 A1EDX sing 7 n n C7 C5 A1EDX sing 8 n n C7 C8 A1EDX sing 9 n n C5 C4 A1EDX sing 10 n n C8 C9 A1EDX sing 11 n n C2 C3 A1EDX sing 12 n n C4 C3 A1EDX sing 13 n n C9 C3 A1EDX sing 14 n n C4 H1 A1EDX sing 15 n n C4 H2 A1EDX sing 16 n n C5 H3 A1EDX sing 17 n n C6 H4 A1EDX sing 18 n n C6 H5 A1EDX sing 19 n n C8 H6 A1EDX sing 20 n n C10 H7 A1EDX sing 21 n n C10 H8 A1EDX sing 22 n n C2 H9 A1EDX sing 23 n n C2 H10 A1EDX sing 24 n n C3 H11 A1EDX sing 25 n n C9 H12 A1EDX sing 26 n n C9 H13 A1EDX sing 27 n n O1 H14 A1EDX sing 28 n n # _atom_sites.entry_id 9JYT _atom_sites.fract_transf_matrix[1][1] 0.014517 _atom_sites.fract_transf_matrix[1][2] 0.008381 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PE8 A 1 201 302 PE8 PE8 . C 3 A1EDX A 1 202 303 A1EDX LIG . D 4 SO4 A 1 203 2 SO4 SO4 . E 4 SO4 A 1 204 3 SO4 SO4 . F 5 CL A 1 205 1 CL CL . G 6 HOH A 1 301 40 HOH HOH . G 6 HOH A 2 302 120 HOH HOH . G 6 HOH A 3 303 76 HOH HOH . G 6 HOH A 4 304 128 HOH HOH . G 6 HOH A 5 305 86 HOH HOH . G 6 HOH A 6 306 51 HOH HOH . G 6 HOH A 7 307 44 HOH HOH . G 6 HOH A 8 308 16 HOH HOH . G 6 HOH A 9 309 17 HOH HOH . G 6 HOH A 10 310 31 HOH HOH . G 6 HOH A 11 311 116 HOH HOH . G 6 HOH A 12 312 121 HOH HOH . G 6 HOH A 13 313 74 HOH HOH . G 6 HOH A 14 314 46 HOH HOH . G 6 HOH A 15 315 1 HOH HOH . G 6 HOH A 16 316 122 HOH HOH . G 6 HOH A 17 317 9 HOH HOH . G 6 HOH A 18 318 7 HOH HOH . G 6 HOH A 19 319 33 HOH HOH . G 6 HOH A 20 320 10 HOH HOH . G 6 HOH A 21 321 2 HOH HOH . G 6 HOH A 22 322 25 HOH HOH . G 6 HOH A 23 323 29 HOH HOH . G 6 HOH A 24 324 64 HOH HOH . G 6 HOH A 25 325 66 HOH HOH . G 6 HOH A 26 326 13 HOH HOH . G 6 HOH A 27 327 3 HOH HOH . G 6 HOH A 28 328 59 HOH HOH . G 6 HOH A 29 329 8 HOH HOH . G 6 HOH A 30 330 12 HOH HOH . G 6 HOH A 31 331 32 HOH HOH . G 6 HOH A 32 332 53 HOH HOH . G 6 HOH A 33 333 69 HOH HOH . G 6 HOH A 34 334 79 HOH HOH . G 6 HOH A 35 335 57 HOH HOH . G 6 HOH A 36 336 21 HOH HOH . G 6 HOH A 37 337 41 HOH HOH . G 6 HOH A 38 338 39 HOH HOH . G 6 HOH A 39 339 18 HOH HOH . G 6 HOH A 40 340 34 HOH HOH . G 6 HOH A 41 341 52 HOH HOH . G 6 HOH A 42 342 11 HOH HOH . G 6 HOH A 43 343 134 HOH HOH . G 6 HOH A 44 344 54 HOH HOH . G 6 HOH A 45 345 28 HOH HOH . G 6 HOH A 46 346 110 HOH HOH . G 6 HOH A 47 347 55 HOH HOH . G 6 HOH A 48 348 23 HOH HOH . G 6 HOH A 49 349 19 HOH HOH . G 6 HOH A 50 350 45 HOH HOH . G 6 HOH A 51 351 132 HOH HOH . G 6 HOH A 52 352 4 HOH HOH . G 6 HOH A 53 353 26 HOH HOH . G 6 HOH A 54 354 24 HOH HOH . G 6 HOH A 55 355 36 HOH HOH . G 6 HOH A 56 356 88 HOH HOH . G 6 HOH A 57 357 15 HOH HOH . G 6 HOH A 58 358 115 HOH HOH . G 6 HOH A 59 359 30 HOH HOH . G 6 HOH A 60 360 131 HOH HOH . G 6 HOH A 61 361 63 HOH HOH . G 6 HOH A 62 362 105 HOH HOH . G 6 HOH A 63 363 103 HOH HOH . G 6 HOH A 64 364 35 HOH HOH . G 6 HOH A 65 365 20 HOH HOH . G 6 HOH A 66 366 37 HOH HOH . G 6 HOH A 67 367 93 HOH HOH . G 6 HOH A 68 368 94 HOH HOH . G 6 HOH A 69 369 91 HOH HOH . G 6 HOH A 70 370 97 HOH HOH . G 6 HOH A 71 371 65 HOH HOH . G 6 HOH A 72 372 47 HOH HOH . G 6 HOH A 73 373 62 HOH HOH . G 6 HOH A 74 374 5 HOH HOH . G 6 HOH A 75 375 80 HOH HOH . G 6 HOH A 76 376 98 HOH HOH . G 6 HOH A 77 377 83 HOH HOH . G 6 HOH A 78 378 90 HOH HOH . G 6 HOH A 79 379 82 HOH HOH . G 6 HOH A 80 380 84 HOH HOH . G 6 HOH A 81 381 87 HOH HOH . G 6 HOH A 82 382 73 HOH HOH . G 6 HOH A 83 383 49 HOH HOH . G 6 HOH A 84 384 14 HOH HOH . G 6 HOH A 85 385 68 HOH HOH . G 6 HOH A 86 386 95 HOH HOH . G 6 HOH A 87 387 118 HOH HOH . G 6 HOH A 88 388 108 HOH HOH . G 6 HOH A 89 389 109 HOH HOH . G 6 HOH A 90 390 70 HOH HOH . G 6 HOH A 91 391 135 HOH HOH . G 6 HOH A 92 392 6 HOH HOH . G 6 HOH A 93 393 104 HOH HOH . G 6 HOH A 94 394 72 HOH HOH . G 6 HOH A 95 395 99 HOH HOH . G 6 HOH A 96 396 42 HOH HOH . G 6 HOH A 97 397 50 HOH HOH . G 6 HOH A 98 398 129 HOH HOH . G 6 HOH A 99 399 107 HOH HOH . G 6 HOH A 100 400 127 HOH HOH . G 6 HOH A 101 401 133 HOH HOH . G 6 HOH A 102 402 117 HOH HOH . G 6 HOH A 103 403 85 HOH HOH . G 6 HOH A 104 404 43 HOH HOH . G 6 HOH A 105 405 130 HOH HOH . G 6 HOH A 106 406 112 HOH HOH . G 6 HOH A 107 407 123 HOH HOH . G 6 HOH A 108 408 67 HOH HOH . G 6 HOH A 109 409 92 HOH HOH . G 6 HOH A 110 410 60 HOH HOH . G 6 HOH A 111 411 71 HOH HOH . G 6 HOH A 112 412 61 HOH HOH . G 6 HOH A 113 413 101 HOH HOH . G 6 HOH A 114 414 38 HOH HOH . G 6 HOH A 115 415 81 HOH HOH . G 6 HOH A 116 416 89 HOH HOH . G 6 HOH A 117 417 125 HOH HOH . G 6 HOH A 118 418 96 HOH HOH . G 6 HOH A 119 419 48 HOH HOH . G 6 HOH A 120 420 124 HOH HOH . G 6 HOH A 121 421 27 HOH HOH . G 6 HOH A 122 422 113 HOH HOH . G 6 HOH A 123 423 75 HOH HOH . G 6 HOH A 124 424 22 HOH HOH . G 6 HOH A 125 425 114 HOH HOH . G 6 HOH A 126 426 136 HOH HOH . G 6 HOH A 127 427 119 HOH HOH . G 6 HOH A 128 428 78 HOH HOH . G 6 HOH A 129 429 77 HOH HOH . G 6 HOH A 130 430 56 HOH HOH . G 6 HOH A 131 431 58 HOH HOH . G 6 HOH A 132 432 100 HOH HOH . G 6 HOH A 133 433 111 HOH HOH . G 6 HOH A 134 434 102 HOH HOH . G 6 HOH A 135 435 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1EDX . A . C 3 39.823 -15.863 15.722 0.58 40.52 ? C4 A1EDX 202 A 1 HETATM 2 C C4 A1EDX . B . C 3 36.254 -15.153 14.649 0.42 38.18 ? C4 A1EDX 202 A 1 HETATM 3 C C5 A1EDX . A . C 3 39.811 -16.226 14.228 0.58 41.35 ? C5 A1EDX 202 A 1 HETATM 4 C C5 A1EDX . B . C 3 36.969 -14.927 13.309 0.42 39.31 ? C5 A1EDX 202 A 1 HETATM 5 C C6 A1EDX . A . C 3 39.548 -14.962 13.392 0.58 41.73 ? C6 A1EDX 202 A 1 HETATM 6 C C6 A1EDX . B . C 3 37.614 -16.246 12.854 0.42 39.65 ? C6 A1EDX 202 A 1 HETATM 7 C C7 A1EDX . A . C 3 38.678 -17.201 14.025 0.58 39.67 ? C7 A1EDX 202 A 1 HETATM 8 C C7 A1EDX . B . C 3 38.053 -13.904 13.546 0.42 40.95 ? C7 A1EDX 202 A 1 HETATM 9 C C8 A1EDX . A . C 3 37.327 -16.622 14.368 0.58 38.4 ? C8 A1EDX 202 A 1 HETATM 10 C C8 A1EDX . B . C 3 39.086 -14.356 14.548 0.42 41.24 ? C8 A1EDX 202 A 1 HETATM 11 C C10 A1EDX . A . C 3 37.089 -15.355 13.53 0.58 40.06 ? C10 A1EDX 202 A 1 HETATM 12 C C10 A1EDX . B . C 3 39.706 -15.685 14.083 0.42 41.47 ? C10 A1EDX 202 A 1 HETATM 13 C C1 A1EDX . A . C 3 38.207 -14.346 13.794 0.58 40.93 ? C1 A1EDX 202 A 1 HETATM 14 C C1 A1EDX . B . C 3 38.605 -16.732 13.913 0.42 40.48 ? C1 A1EDX 202 A 1 HETATM 15 C C2 A1EDX . A . C 3 38.243 -13.989 15.269 0.58 41.57 ? C2 A1EDX 202 A 1 HETATM 16 C C2 A1EDX . B . C 3 37.891 -16.938 15.236 0.42 39.66 ? C2 A1EDX 202 A 1 HETATM 17 C C3 A1EDX . A . C 3 38.481 -15.246 16.113 0.58 40.09 ? C3 A1EDX 202 A 1 HETATM 18 C C3 A1EDX . B . C 3 37.258 -15.622 15.701 0.42 38.72 ? C3 A1EDX 202 A 1 HETATM 19 C C9 A1EDX . A . C 3 37.354 -16.244 15.856 0.58 38.74 ? C9 A1EDX 202 A 1 HETATM 20 C C9 A1EDX . B . C 3 38.355 -14.575 15.882 0.42 40.8 ? C9 A1EDX 202 A 1 HETATM 21 O O1 A1EDX . A . C 3 37.965 -13.153 13.033 0.58 42.33 ? O1 A1EDX 202 A 1 HETATM 22 O O1 A1EDX . B . C 3 39.179 -17.985 13.506 0.42 41.02 ? O1 A1EDX 202 A 1 HETATM 23 O O2 A1EDX . A . C 3 38.844 -18.348 13.656 0.58 37.74 ? O2 A1EDX 202 A 1 HETATM 24 O O2 A1EDX . B . C 3 38.07 -12.811 13.014 0.42 41.48 ? O2 A1EDX 202 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #