data_9JYV # _model_server_result.job_id ga8Xyh-lJXBcMNAzJskVBw _model_server_result.datetime_utc '2025-08-28 04:35:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 9JYV # _exptl.entry_id 9JYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 109.126 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methylpyridin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9JYV _cell.length_a 69.442 _cell.length_b 69.442 _cell.length_c 79.471 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C6 H7 N O' _chem_comp.formula_weight 109.126 _chem_comp.id A1ED2 _chem_comp.mon_nstd_flag . _chem_comp.name 1-methylpyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 694-85-9 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C6 A1ED2 doub 1 n n C6 C5 A1ED2 sing 2 n n C6 N1 A1ED2 sing 3 n n C5 C4 A1ED2 doub 4 n n C1 N1 A1ED2 sing 5 n n N1 C2 A1ED2 sing 6 n n C4 C3 A1ED2 sing 7 n n C2 C3 A1ED2 doub 8 n n C4 H1 A1ED2 sing 9 n n C5 H2 A1ED2 sing 10 n n C1 H3 A1ED2 sing 11 n n C1 H4 A1ED2 sing 12 n n C1 H5 A1ED2 sing 13 n n C2 H6 A1ED2 sing 14 n n C3 H7 A1ED2 sing 15 n n # _atom_sites.entry_id 9JYV _atom_sites.fract_transf_matrix[1][1] 0.014401 _atom_sites.fract_transf_matrix[1][2] 0.008314 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PE8 A 1 201 304 PE8 PE8 . C 3 A1ED2 A 1 202 301 A1ED2 LIG . D 3 A1ED2 A 1 203 303 A1ED2 LIG . E 4 SO4 A 1 204 1 SO4 SO4 . F 4 SO4 A 1 205 2 SO4 SO4 . G 5 HOH A 1 301 110 HOH HOH . G 5 HOH A 2 302 44 HOH HOH . G 5 HOH A 3 303 62 HOH HOH . G 5 HOH A 4 304 27 HOH HOH . G 5 HOH A 5 305 4 HOH HOH . G 5 HOH A 6 306 108 HOH HOH . G 5 HOH A 7 307 75 HOH HOH . G 5 HOH A 8 308 70 HOH HOH . G 5 HOH A 9 309 42 HOH HOH . G 5 HOH A 10 310 117 HOH HOH . G 5 HOH A 11 311 96 HOH HOH . G 5 HOH A 12 312 57 HOH HOH . G 5 HOH A 13 313 85 HOH HOH . G 5 HOH A 14 314 40 HOH HOH . G 5 HOH A 15 315 109 HOH HOH . G 5 HOH A 16 316 120 HOH HOH . G 5 HOH A 17 317 26 HOH HOH . G 5 HOH A 18 318 23 HOH HOH . G 5 HOH A 19 319 112 HOH HOH . G 5 HOH A 20 320 9 HOH HOH . G 5 HOH A 21 321 17 HOH HOH . G 5 HOH A 22 322 10 HOH HOH . G 5 HOH A 23 323 20 HOH HOH . G 5 HOH A 24 324 60 HOH HOH . G 5 HOH A 25 325 6 HOH HOH . G 5 HOH A 26 326 59 HOH HOH . G 5 HOH A 27 327 25 HOH HOH . G 5 HOH A 28 328 12 HOH HOH . G 5 HOH A 29 329 28 HOH HOH . G 5 HOH A 30 330 18 HOH HOH . G 5 HOH A 31 331 48 HOH HOH . G 5 HOH A 32 332 53 HOH HOH . G 5 HOH A 33 333 37 HOH HOH . G 5 HOH A 34 334 113 HOH HOH . G 5 HOH A 35 335 5 HOH HOH . G 5 HOH A 36 336 33 HOH HOH . G 5 HOH A 37 337 11 HOH HOH . G 5 HOH A 38 338 43 HOH HOH . G 5 HOH A 39 339 3 HOH HOH . G 5 HOH A 40 340 65 HOH HOH . G 5 HOH A 41 341 82 HOH HOH . G 5 HOH A 42 342 15 HOH HOH . G 5 HOH A 43 343 83 HOH HOH . G 5 HOH A 44 344 1 HOH HOH . G 5 HOH A 45 345 34 HOH HOH . G 5 HOH A 46 346 54 HOH HOH . G 5 HOH A 47 347 79 HOH HOH . G 5 HOH A 48 348 29 HOH HOH . G 5 HOH A 49 349 100 HOH HOH . G 5 HOH A 50 350 52 HOH HOH . G 5 HOH A 51 351 63 HOH HOH . G 5 HOH A 52 352 2 HOH HOH . G 5 HOH A 53 353 101 HOH HOH . G 5 HOH A 54 354 24 HOH HOH . G 5 HOH A 55 355 111 HOH HOH . G 5 HOH A 56 356 91 HOH HOH . G 5 HOH A 57 357 114 HOH HOH . G 5 HOH A 58 358 118 HOH HOH . G 5 HOH A 59 359 41 HOH HOH . G 5 HOH A 60 360 7 HOH HOH . G 5 HOH A 61 361 8 HOH HOH . G 5 HOH A 62 362 102 HOH HOH . G 5 HOH A 63 363 22 HOH HOH . G 5 HOH A 64 364 31 HOH HOH . G 5 HOH A 65 365 94 HOH HOH . G 5 HOH A 66 366 38 HOH HOH . G 5 HOH A 67 367 92 HOH HOH . G 5 HOH A 68 368 16 HOH HOH . G 5 HOH A 69 369 105 HOH HOH . G 5 HOH A 70 370 86 HOH HOH . G 5 HOH A 71 371 13 HOH HOH . G 5 HOH A 72 372 47 HOH HOH . G 5 HOH A 73 373 98 HOH HOH . G 5 HOH A 74 374 77 HOH HOH . G 5 HOH A 75 375 61 HOH HOH . G 5 HOH A 76 376 71 HOH HOH . G 5 HOH A 77 377 88 HOH HOH . G 5 HOH A 78 378 73 HOH HOH . G 5 HOH A 79 379 14 HOH HOH . G 5 HOH A 80 380 35 HOH HOH . G 5 HOH A 81 381 19 HOH HOH . G 5 HOH A 82 382 58 HOH HOH . G 5 HOH A 83 383 64 HOH HOH . G 5 HOH A 84 384 119 HOH HOH . G 5 HOH A 85 385 103 HOH HOH . G 5 HOH A 86 386 51 HOH HOH . G 5 HOH A 87 387 115 HOH HOH . G 5 HOH A 88 388 30 HOH HOH . G 5 HOH A 89 389 66 HOH HOH . G 5 HOH A 90 390 99 HOH HOH . G 5 HOH A 91 391 72 HOH HOH . G 5 HOH A 92 392 50 HOH HOH . G 5 HOH A 93 393 121 HOH HOH . G 5 HOH A 94 394 36 HOH HOH . G 5 HOH A 95 395 81 HOH HOH . G 5 HOH A 96 396 90 HOH HOH . G 5 HOH A 97 397 68 HOH HOH . G 5 HOH A 98 398 32 HOH HOH . G 5 HOH A 99 399 116 HOH HOH . G 5 HOH A 100 400 80 HOH HOH . G 5 HOH A 101 401 93 HOH HOH . G 5 HOH A 102 402 39 HOH HOH . G 5 HOH A 103 403 21 HOH HOH . G 5 HOH A 104 404 49 HOH HOH . G 5 HOH A 105 405 97 HOH HOH . G 5 HOH A 106 406 84 HOH HOH . G 5 HOH A 107 407 78 HOH HOH . G 5 HOH A 108 408 67 HOH HOH . G 5 HOH A 109 409 69 HOH HOH . G 5 HOH A 110 410 95 HOH HOH . G 5 HOH A 111 411 46 HOH HOH . G 5 HOH A 112 412 89 HOH HOH . G 5 HOH A 113 413 55 HOH HOH . G 5 HOH A 114 414 76 HOH HOH . G 5 HOH A 115 415 106 HOH HOH . G 5 HOH A 116 416 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1ED2 . . . D 3 12.529 -21.835 13.256 0.47 45.33 ? N1 A1ED2 203 A 1 HETATM 2 C C4 A1ED2 . . . D 3 13.971 -24.172 13.214 0.47 44.76 ? C4 A1ED2 203 A 1 HETATM 3 C C5 A1ED2 . . . D 3 14.527 -23.042 12.73 0.47 43.9 ? C5 A1ED2 203 A 1 HETATM 4 C C6 A1ED2 . . . D 3 13.819 -21.801 12.732 0.47 45.18 ? C6 A1ED2 203 A 1 HETATM 5 C C1 A1ED2 . . . D 3 11.758 -20.587 13.279 0.47 47.14 ? C1 A1ED2 203 A 1 HETATM 6 C C2 A1ED2 . . . D 3 11.982 -22.993 13.741 0.47 45.28 ? C2 A1ED2 203 A 1 HETATM 7 C C3 A1ED2 . . . D 3 12.667 -24.153 13.733 0.47 43.02 ? C3 A1ED2 203 A 1 HETATM 8 O O1 A1ED2 . . . D 3 14.264 -20.723 12.307 0.47 46.29 ? O1 A1ED2 203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #