data_9JZ3
#
_model_server_result.job_id            9OvYaeupgo65jW-s-amLkQ 
_model_server_result.datetime_utc      '2025-08-28 08:57:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9jz3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    9JZ3 
#
_exptl.entry_id    9JZ3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              148.162 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3H-benzimidazol-5-ylmethanol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9JZ3 
_cell.length_a            68.798 
_cell.length_b            68.798 
_cell.length_c            79.518 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9JZ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C8 H8 N2 O' 
_chem_comp.formula_weight    148.162 
_chem_comp.id                A1ED4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3H-benzimidazol-5-ylmethanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1H-benzimidazol-5-ylmethanol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 A1ED4 sing 1 n n 
C1 C2 A1ED4 sing 2 n n 
C3 C2 A1ED4 doub 3 n y 
C3 C4 A1ED4 sing 4 n y 
C2 C8 A1ED4 sing 5 n y 
N2 C4 A1ED4 sing 6 n y 
N2 C6 A1ED4 sing 7 n y 
C4 C5 A1ED4 doub 8 n y 
C8 C7 A1ED4 doub 9 n y 
C6 N1 A1ED4 doub 10 n y 
C5 C7 A1ED4 sing 11 n y 
C5 N1 A1ED4 sing 12 n y 
C6 H2 A1ED4 sing 13 n n 
C7 H3 A1ED4 sing 14 n n 
C8 H4 A1ED4 sing 15 n n 
C1 H5 A1ED4 sing 16 n n 
C1 H6 A1ED4 sing 17 n n 
C3 H7 A1ED4 sing 18 n n 
N2 H8 A1ED4 sing 19 n n 
O1 H9 A1ED4 sing 20 n n 
#
_atom_sites.entry_id                     9JZ3 
_atom_sites.fract_transf_matrix[1][1]    0.014535 
_atom_sites.fract_transf_matrix[1][2]    0.008392 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016784 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012576 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1ED4 A 1 301 301 A1ED4 LIG . 
C 3 PE8 A 1 302 302 PE8 PE8 . 
D 4 SO4 A 1 303 1 SO4 SO4 . 
E 5 CL A 1 304 1 CL CL . 
F 6 HOH A 1 401 11 HOH HOH . 
F 6 HOH A 2 402 25 HOH HOH . 
F 6 HOH A 3 403 6 HOH HOH . 
F 6 HOH A 4 404 3 HOH HOH . 
F 6 HOH A 5 405 21 HOH HOH . 
F 6 HOH A 6 406 14 HOH HOH . 
F 6 HOH A 7 407 8 HOH HOH . 
F 6 HOH A 8 408 16 HOH HOH . 
F 6 HOH A 9 409 29 HOH HOH . 
F 6 HOH A 10 410 2 HOH HOH . 
F 6 HOH A 11 411 78 HOH HOH . 
F 6 HOH A 12 412 1 HOH HOH . 
F 6 HOH A 13 413 7 HOH HOH . 
F 6 HOH A 14 414 46 HOH HOH . 
F 6 HOH A 15 415 30 HOH HOH . 
F 6 HOH A 16 416 76 HOH HOH . 
F 6 HOH A 17 417 92 HOH HOH . 
F 6 HOH A 18 418 79 HOH HOH . 
F 6 HOH A 19 419 56 HOH HOH . 
F 6 HOH A 20 420 26 HOH HOH . 
F 6 HOH A 21 421 24 HOH HOH . 
F 6 HOH A 22 422 15 HOH HOH . 
F 6 HOH A 23 423 4 HOH HOH . 
F 6 HOH A 24 424 23 HOH HOH . 
F 6 HOH A 25 425 80 HOH HOH . 
F 6 HOH A 26 426 5 HOH HOH . 
F 6 HOH A 27 427 62 HOH HOH . 
F 6 HOH A 28 428 98 HOH HOH . 
F 6 HOH A 29 429 22 HOH HOH . 
F 6 HOH A 30 430 19 HOH HOH . 
F 6 HOH A 31 431 17 HOH HOH . 
F 6 HOH A 32 432 33 HOH HOH . 
F 6 HOH A 33 433 13 HOH HOH . 
F 6 HOH A 34 434 28 HOH HOH . 
F 6 HOH A 35 435 39 HOH HOH . 
F 6 HOH A 36 436 18 HOH HOH . 
F 6 HOH A 37 437 53 HOH HOH . 
F 6 HOH A 38 438 73 HOH HOH . 
F 6 HOH A 39 439 93 HOH HOH . 
F 6 HOH A 40 440 10 HOH HOH . 
F 6 HOH A 41 441 40 HOH HOH . 
F 6 HOH A 42 442 31 HOH HOH . 
F 6 HOH A 43 443 9 HOH HOH . 
F 6 HOH A 44 444 69 HOH HOH . 
F 6 HOH A 45 445 71 HOH HOH . 
F 6 HOH A 46 446 47 HOH HOH . 
F 6 HOH A 47 447 36 HOH HOH . 
F 6 HOH A 48 448 86 HOH HOH . 
F 6 HOH A 49 449 61 HOH HOH . 
F 6 HOH A 50 450 44 HOH HOH . 
F 6 HOH A 51 451 54 HOH HOH . 
F 6 HOH A 52 452 64 HOH HOH . 
F 6 HOH A 53 453 99 HOH HOH . 
F 6 HOH A 54 454 48 HOH HOH . 
F 6 HOH A 55 455 82 HOH HOH . 
F 6 HOH A 56 456 50 HOH HOH . 
F 6 HOH A 57 457 20 HOH HOH . 
F 6 HOH A 58 458 77 HOH HOH . 
F 6 HOH A 59 459 97 HOH HOH . 
F 6 HOH A 60 460 49 HOH HOH . 
F 6 HOH A 61 461 12 HOH HOH . 
F 6 HOH A 62 462 42 HOH HOH . 
F 6 HOH A 63 463 27 HOH HOH . 
F 6 HOH A 64 464 75 HOH HOH . 
F 6 HOH A 65 465 101 HOH HOH . 
F 6 HOH A 66 466 84 HOH HOH . 
F 6 HOH A 67 467 94 HOH HOH . 
F 6 HOH A 68 468 88 HOH HOH . 
F 6 HOH A 69 469 81 HOH HOH . 
F 6 HOH A 70 470 63 HOH HOH . 
F 6 HOH A 71 471 34 HOH HOH . 
F 6 HOH A 72 472 90 HOH HOH . 
F 6 HOH A 73 473 35 HOH HOH . 
F 6 HOH A 74 474 66 HOH HOH . 
F 6 HOH A 75 475 37 HOH HOH . 
F 6 HOH A 76 476 83 HOH HOH . 
F 6 HOH A 77 477 96 HOH HOH . 
F 6 HOH A 78 478 70 HOH HOH . 
F 6 HOH A 79 479 32 HOH HOH . 
F 6 HOH A 80 480 45 HOH HOH . 
F 6 HOH A 81 481 65 HOH HOH . 
F 6 HOH A 82 482 43 HOH HOH . 
F 6 HOH A 83 483 68 HOH HOH . 
F 6 HOH A 84 484 41 HOH HOH . 
F 6 HOH A 85 485 59 HOH HOH . 
F 6 HOH A 86 486 67 HOH HOH . 
F 6 HOH A 87 487 60 HOH HOH . 
F 6 HOH A 88 488 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 A1ED4 . . . B 2 -39.755 18.245 15.97 1 42.38 ? N1 A1ED4 301 A 1 
HETATM 2 C C4 A1ED4 . . . B 2 -39.48 17.312 13.92 1 40.56 ? C4 A1ED4 301 A 1 
HETATM 3 C C5 A1ED4 . . . B 2 -38.96 17.392 15.214 1 41.26 ? C5 A1ED4 301 A 1 
HETATM 4 C C6 A1ED4 . . . B 2 -40.699 18.642 15.144 1 45.76 ? C6 A1ED4 301 A 1 
HETATM 5 C C7 A1ED4 . . . B 2 -37.822 16.666 15.554 1 41.77 ? C7 A1ED4 301 A 1 
HETATM 6 C C8 A1ED4 . . . B 2 -37.233 15.894 14.582 1 43.31 ? C8 A1ED4 301 A 1 
HETATM 7 C C1 A1ED4 . . . B 2 -37.058 14.939 12.263 1 39.77 ? C1 A1ED4 301 A 1 
HETATM 8 C C2 A1ED4 . . . B 2 -37.746 15.807 13.283 1 43.43 ? C2 A1ED4 301 A 1 
HETATM 9 C C3 A1ED4 . . . B 2 -38.886 16.52 12.944 1 41.95 ? C3 A1ED4 301 A 1 
HETATM 10 N N2 A1ED4 . . . B 2 -40.59 18.124 13.912 1 43.68 ? N2 A1ED4 301 A 1 
HETATM 11 O O1 A1ED4 . . . B 2 -37.405 13.574 12.407 1 40.61 ? O1 A1ED4 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           11 
#