data_9JZV
#
_model_server_result.job_id            qDKZbyZi3EF-OjrcXyBYYw 
_model_server_result.datetime_utc      '2025-08-28 09:01:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9jzv 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    9JZV 
#
_exptl.entry_id    9JZV 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              114.146 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,3-dimethylimidazolidin-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9JZV 
_cell.length_a            70.645 
_cell.length_b            70.645 
_cell.length_c            80.802 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 9JZV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H10 N2 O' 
_chem_comp.formula_weight    114.146 
_chem_comp.id                A1EEA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,3-dimethylimidazolidin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1,3-Dimethyl-2-imidazolidinone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C5 A1EEA doub 1 n n 
C5 N2 A1EEA sing 2 n n 
C5 N1 A1EEA sing 3 n n 
C4 N2 A1EEA sing 4 n n 
C1 N1 A1EEA sing 5 n n 
N2 C3 A1EEA sing 6 n n 
N1 C2 A1EEA sing 7 n n 
C3 C2 A1EEA sing 8 n n 
C4 H1 A1EEA sing 9 n n 
C4 H2 A1EEA sing 10 n n 
C4 H3 A1EEA sing 11 n n 
C1 H4 A1EEA sing 12 n n 
C1 H5 A1EEA sing 13 n n 
C1 H6 A1EEA sing 14 n n 
C2 H7 A1EEA sing 15 n n 
C3 H8 A1EEA sing 16 n n 
C2 H9 A1EEA sing 17 n n 
C3 H10 A1EEA sing 18 n n 
#
_atom_sites.entry_id                     9JZV 
_atom_sites.fract_transf_matrix[1][1]    0.014155 
_atom_sites.fract_transf_matrix[1][2]    0.008173 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016345 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PE8 A 1 201 201 PE8 PE8 . 
C 3 A1EEA A 1 202 202 A1EEA LIG . 
D 4 SO4 A 1 203 2 SO4 SO4 . 
E 5 CL A 1 204 1 CL CL . 
F 6 HOH A 1 301 54 HOH HOH . 
F 6 HOH A 2 302 61 HOH HOH . 
F 6 HOH A 3 303 8 HOH HOH . 
F 6 HOH A 4 304 41 HOH HOH . 
F 6 HOH A 5 305 87 HOH HOH . 
F 6 HOH A 6 306 30 HOH HOH . 
F 6 HOH A 7 307 38 HOH HOH . 
F 6 HOH A 8 308 68 HOH HOH . 
F 6 HOH A 9 309 53 HOH HOH . 
F 6 HOH A 10 310 21 HOH HOH . 
F 6 HOH A 11 311 57 HOH HOH . 
F 6 HOH A 12 312 60 HOH HOH . 
F 6 HOH A 13 313 95 HOH HOH . 
F 6 HOH A 14 314 7 HOH HOH . 
F 6 HOH A 15 315 12 HOH HOH . 
F 6 HOH A 16 316 25 HOH HOH . 
F 6 HOH A 17 317 22 HOH HOH . 
F 6 HOH A 18 318 79 HOH HOH . 
F 6 HOH A 19 319 14 HOH HOH . 
F 6 HOH A 20 320 2 HOH HOH . 
F 6 HOH A 21 321 84 HOH HOH . 
F 6 HOH A 22 322 29 HOH HOH . 
F 6 HOH A 23 323 24 HOH HOH . 
F 6 HOH A 24 324 1 HOH HOH . 
F 6 HOH A 25 325 52 HOH HOH . 
F 6 HOH A 26 326 32 HOH HOH . 
F 6 HOH A 27 327 33 HOH HOH . 
F 6 HOH A 28 328 10 HOH HOH . 
F 6 HOH A 29 329 26 HOH HOH . 
F 6 HOH A 30 330 13 HOH HOH . 
F 6 HOH A 31 331 18 HOH HOH . 
F 6 HOH A 32 332 15 HOH HOH . 
F 6 HOH A 33 333 50 HOH HOH . 
F 6 HOH A 34 334 11 HOH HOH . 
F 6 HOH A 35 335 4 HOH HOH . 
F 6 HOH A 36 336 9 HOH HOH . 
F 6 HOH A 37 337 27 HOH HOH . 
F 6 HOH A 38 338 45 HOH HOH . 
F 6 HOH A 39 339 5 HOH HOH . 
F 6 HOH A 40 340 94 HOH HOH . 
F 6 HOH A 41 341 39 HOH HOH . 
F 6 HOH A 42 342 36 HOH HOH . 
F 6 HOH A 43 343 16 HOH HOH . 
F 6 HOH A 44 344 66 HOH HOH . 
F 6 HOH A 45 345 43 HOH HOH . 
F 6 HOH A 46 346 37 HOH HOH . 
F 6 HOH A 47 347 93 HOH HOH . 
F 6 HOH A 48 348 28 HOH HOH . 
F 6 HOH A 49 349 48 HOH HOH . 
F 6 HOH A 50 350 49 HOH HOH . 
F 6 HOH A 51 351 19 HOH HOH . 
F 6 HOH A 52 352 58 HOH HOH . 
F 6 HOH A 53 353 23 HOH HOH . 
F 6 HOH A 54 354 17 HOH HOH . 
F 6 HOH A 55 355 31 HOH HOH . 
F 6 HOH A 56 356 55 HOH HOH . 
F 6 HOH A 57 357 88 HOH HOH . 
F 6 HOH A 58 358 3 HOH HOH . 
F 6 HOH A 59 359 6 HOH HOH . 
F 6 HOH A 60 360 83 HOH HOH . 
F 6 HOH A 61 361 96 HOH HOH . 
F 6 HOH A 62 362 62 HOH HOH . 
F 6 HOH A 63 363 82 HOH HOH . 
F 6 HOH A 64 364 91 HOH HOH . 
F 6 HOH A 65 365 89 HOH HOH . 
F 6 HOH A 66 366 92 HOH HOH . 
F 6 HOH A 67 367 64 HOH HOH . 
F 6 HOH A 68 368 35 HOH HOH . 
F 6 HOH A 69 369 86 HOH HOH . 
F 6 HOH A 70 370 59 HOH HOH . 
F 6 HOH A 71 371 75 HOH HOH . 
F 6 HOH A 72 372 81 HOH HOH . 
F 6 HOH A 73 373 20 HOH HOH . 
F 6 HOH A 74 374 78 HOH HOH . 
F 6 HOH A 75 375 51 HOH HOH . 
F 6 HOH A 76 376 76 HOH HOH . 
F 6 HOH A 77 377 63 HOH HOH . 
F 6 HOH A 78 378 70 HOH HOH . 
F 6 HOH A 79 379 72 HOH HOH . 
F 6 HOH A 80 380 77 HOH HOH . 
F 6 HOH A 81 381 56 HOH HOH . 
F 6 HOH A 82 382 85 HOH HOH . 
F 6 HOH A 83 383 65 HOH HOH . 
F 6 HOH A 84 384 90 HOH HOH . 
F 6 HOH A 85 385 97 HOH HOH . 
F 6 HOH A 86 386 73 HOH HOH . 
F 6 HOH A 87 387 80 HOH HOH . 
F 6 HOH A 88 388 34 HOH HOH . 
F 6 HOH A 89 389 42 HOH HOH . 
F 6 HOH A 90 390 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 A1EEA . . . C 3 -39.671 13.675 14.861 1 53.27 ? N1 A1EEA 202 A 1 
HETATM 2 C C4 A1EEA . . . C 3 -37.214 16.281 14.414 1 39.75 ? C4 A1EEA 202 A 1 
HETATM 3 C C5 A1EEA . . . C 3 -38.783 14.369 14.084 1 54.1 ? C5 A1EEA 202 A 1 
HETATM 4 C C1 A1EEA . . . C 3 -40.431 12.516 14.423 1 49.38 ? C1 A1EEA 202 A 1 
HETATM 5 C C2 A1EEA . . . C 3 -39.767 14.216 16.216 1 56.65 ? C2 A1EEA 202 A 1 
HETATM 6 C C3 A1EEA . . . C 3 -38.876 15.451 16.171 1 51.79 ? C3 A1EEA 202 A 1 
HETATM 7 N N2 A1EEA . . . C 3 -38.254 15.367 14.852 1 48.88 ? N2 A1EEA 202 A 1 
HETATM 8 O O1 A1EEA . . . C 3 -38.503 14.134 12.911 1 43.29 ? O1 A1EEA 202 A 1 
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_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           497 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           8 
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