data_9K3Q # _model_server_result.job_id FWHrHVxmLjkQd_ovguGnOA _model_server_result.datetime_utc '2025-03-04 08:52:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9k3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LC","auth_seq_id":1001}' # _entry.id 9K3Q # _exptl.entry_id 9K3Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 596.925 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPIRILLOXANTHIN _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9K3Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9K3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 35-meric _pdbx_struct_assembly.oligomeric_count 35 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 KA N N ? 7 MA N N ? 7 PA N N ? 7 SA N N ? 7 VA N N ? 7 EB N N ? 7 HB N N ? 7 SB N N ? 7 UB N N ? 7 WB N N ? 7 ZB N N ? 7 CC N N ? 7 FC N N ? 7 IC N N ? 7 LC N N ? 7 NC N N ? 7 PC N N # _chem_comp.formula 'C42 H60 O2' _chem_comp.formula_weight 596.925 _chem_comp.id CRT _chem_comp.mon_nstd_flag . _chem_comp.name SPIRILLOXANTHIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RHODOVIOLASCIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1M O1 CRT sing 354 n n C1M H1M1 CRT sing 355 n n C1M H1M2 CRT sing 356 n n C1M H1M3 CRT sing 357 n n O1 C1 CRT sing 358 n n C1 C2 CRT sing 359 n n C1 C3 CRT sing 360 n n C1 C4 CRT sing 361 n n C2 H21A CRT sing 362 n n C2 H22A CRT sing 363 n n C2 H23 CRT sing 364 n n C3 H31A CRT sing 365 n n C3 H32A CRT sing 366 n n C3 H33 CRT sing 367 n n C4 C5 CRT sing 368 n n C4 H41 CRT sing 369 n n C4 H42 CRT sing 370 n n C5 C6 CRT doub 371 e n C5 H5 CRT sing 372 n n C6 C7 CRT sing 373 n n C6 H6 CRT sing 374 n n C7 C8 CRT sing 375 n n C7 C9 CRT doub 376 e n C8 H81 CRT sing 377 n n C8 H82 CRT sing 378 n n C8 H83 CRT sing 379 n n C9 C10 CRT sing 380 n n C9 H9 CRT sing 381 n n C10 C11 CRT doub 382 e n C10 H10 CRT sing 383 n n C11 C12 CRT sing 384 n n C11 H11 CRT sing 385 n n C12 C13 CRT sing 386 n n C12 C14 CRT doub 387 e n C13 H131 CRT sing 388 n n C13 H132 CRT sing 389 n n C13 H133 CRT sing 390 n n C14 C15 CRT sing 391 n n C14 H14 CRT sing 392 n n C15 C16 CRT doub 393 e n C15 H15 CRT sing 394 n n C16 C17 CRT sing 395 n n C16 H16 CRT sing 396 n n C17 C18 CRT sing 397 n n C17 C19 CRT doub 398 e n C18 H181 CRT sing 399 n n C18 H182 CRT sing 400 n n C18 H183 CRT sing 401 n n C19 C20 CRT sing 402 n n C19 H19 CRT sing 403 n n C20 C21 CRT doub 404 z n C20 H20 CRT sing 405 n n C21 C22 CRT sing 406 n n C21 H21 CRT sing 407 n n C22 C23 CRT doub 408 e n C22 H22 CRT sing 409 n n C23 C24 CRT sing 410 n n C23 C25 CRT sing 411 n n C24 H241 CRT sing 412 n n C24 H242 CRT sing 413 n n C24 H243 CRT sing 414 n n C25 C26 CRT doub 415 e n C25 H25 CRT sing 416 n n C26 C27 CRT sing 417 n n C26 H26 CRT sing 418 n n C27 C28 CRT doub 419 e n C27 H27 CRT sing 420 n n C28 C29 CRT sing 421 n n C28 C30 CRT sing 422 n n C29 H291 CRT sing 423 n n C29 H292 CRT sing 424 n n C29 H293 CRT sing 425 n n C30 C31 CRT doub 426 e n C30 H30 CRT sing 427 n n C31 C32 CRT sing 428 n n C31 H31 CRT sing 429 n n C32 C33 CRT doub 430 e n C32 H32 CRT sing 431 n n C33 C34 CRT sing 432 n n C33 C35 CRT sing 433 n n C34 H341 CRT sing 434 n n C34 H342 CRT sing 435 n n C34 H343 CRT sing 436 n n C35 C36 CRT doub 437 e n C35 H35 CRT sing 438 n n C36 C37 CRT sing 439 n n C36 H36 CRT sing 440 n n C37 C38 CRT sing 441 n n C37 H371 CRT sing 442 n n C37 H372 CRT sing 443 n n C38 C39 CRT sing 444 n n C38 C40 CRT sing 445 n n C38 O2 CRT sing 446 n n C39 H391 CRT sing 447 n n C39 H392 CRT sing 448 n n C39 H393 CRT sing 449 n n C40 H401 CRT sing 450 n n C40 H402 CRT sing 451 n n C40 H403 CRT sing 452 n n O2 C2M CRT sing 453 n n C2M H2M1 CRT sing 454 n n C2M H2M2 CRT sing 455 n n C2M H2M3 CRT sing 456 n n # _atom_sites.entry_id 9K3Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code JA 6 07D 1 1 1001 1001 07D 07D . KA 7 CRT 1 1 1002 1002 CRT CRT . LA 6 07D 2 1 1001 1001 07D 07D . MA 7 CRT 3 1 101 101 CRT CRT . NA 6 07D 3 1 102 102 07D 07D . OA 6 07D 4 1 1001 1001 07D 07D . PA 7 CRT 5 1 101 101 CRT CRT . QA 6 07D 5 1 102 102 07D 07D . RA 6 07D 6 1 1001 1001 07D 07D . SA 7 CRT 7 1 101 101 CRT CRT . TA 6 07D 7 1 102 102 07D 07D . UA 6 07D 8 1 1001 1001 07D 07D . VA 7 CRT 9 1 101 101 CRT CRT . WA 6 07D 9 1 102 102 07D 07D . XA 6 07D A 1 101 101 07D 07D . YA 6 07D D 1 1001 1001 07D 07D . ZA 6 07D E 1 1001 1001 07D 07D . AB 6 07D F 1 1001 1001 07D 07D . BB 6 07D G 1 1001 1001 07D 07D . CB 6 07D H 1 301 301 07D 07D . DB 8 FE H 1 302 407 FE FE . EB 7 CRT I 1 101 101 CRT CRT . FB 6 07D I 1 102 102 07D 07D . GB 6 07D J 1 1001 1001 07D 07D . HB 7 CRT K 1 101 101 CRT CRT . IB 6 07D K 1 102 102 07D 07D . JB 9 BPH L 1 1001 1001 BPH BPH . KB 10 U10 L 1 1002 1003 U10 U10 . LB 6 07D L 1 1003 1004 07D 07D . MB 6 07D L 1 1004 1005 07D 07D . NB 10 U10 L 1 1005 1006 U10 U10 . OB 9 BPH M 1 401 402 BPH BPH . PB 10 U10 M 1 402 403 U10 U10 . QB 6 07D M 1 403 404 07D 07D . RB 6 07D M 1 404 405 07D 07D . SB 7 CRT M 1 405 406 CRT CRT . TB 6 07D N 1 101 1002 07D 07D . UB 7 CRT O 1 101 101 CRT CRT . VB 6 07D O 1 102 102 07D 07D . WB 7 CRT Q 1 101 101 CRT CRT . XB 6 07D Q 1 102 102 07D 07D . YB 6 07D R 1 101 101 07D 07D . ZB 7 CRT S 1 101 101 CRT CRT . AC 6 07D S 1 102 102 07D 07D . BC 6 07D T 1 101 101 07D 07D . CC 7 CRT U 1 101 1002 CRT CRT . DC 6 07D U 1 102 1001 07D 07D . EC 6 07D V 1 1001 1001 07D 07D . FC 7 CRT W 1 1001 1001 CRT CRT . GC 6 07D W 1 1002 1001 07D 07D . HC 6 07D X 1 1001 1001 07D 07D . IC 7 CRT Y 1 101 101 CRT CRT . JC 6 07D Y 1 102 102 07D 07D . KC 6 07D Z 1 1001 1001 07D 07D . LC 7 CRT d 1 1001 1001 CRT CRT . MC 6 07D d 1 1002 1002 07D 07D . NC 7 CRT m 1 101 101 CRT CRT . OC 6 07D m 1 102 102 07D 07D . PC 7 CRT n 1 101 101 CRT CRT . QC 6 07D n 1 102 102 07D 07D . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1M CRT . . . LC 7 110.418 86.312 136.466 1 96.59 ? C1M CRT 1001 d 1 HETATM 2 O O1 CRT . . . LC 7 110.911 86.406 135.151 1 100.35 ? O1 CRT 1001 d 1 HETATM 3 C C1 CRT . . . LC 7 112.18 87.032 134.962 1 94.47 ? C1 CRT 1001 d 1 HETATM 4 C C2 CRT . . . LC 7 112.473 87.201 133.473 1 94.71 ? C2 CRT 1001 d 1 HETATM 5 C C3 CRT . . . LC 7 112.236 88.405 135.643 1 86.76 ? C3 CRT 1001 d 1 HETATM 6 C C4 CRT . . . LC 7 113.226 86.097 135.618 1 91.41 ? C4 CRT 1001 d 1 HETATM 7 C C5 CRT . . . LC 7 114.556 86.151 134.95 1 93.12 ? C5 CRT 1001 d 1 HETATM 8 C C6 CRT . . . LC 7 115.613 86.824 135.404 1 95.69 ? C6 CRT 1001 d 1 HETATM 9 C C7 CRT . . . LC 7 116.917 86.867 134.767 1 94.26 ? C7 CRT 1001 d 1 HETATM 10 C C8 CRT . . . LC 7 116.979 86.73 133.278 1 93.68 ? C8 CRT 1001 d 1 HETATM 11 C C9 CRT . . . LC 7 118.011 87.042 135.553 1 91.44 ? C9 CRT 1001 d 1 HETATM 12 C C10 CRT . . . LC 7 119.394 87.119 135.155 1 93.47 ? C10 CRT 1001 d 1 HETATM 13 C C11 CRT . . . LC 7 120.382 87.14 136.074 1 96.73 ? C11 CRT 1001 d 1 HETATM 14 C C12 CRT . . . LC 7 121.803 87.215 135.865 1 96.86 ? C12 CRT 1001 d 1 HETATM 15 C C13 CRT . . . LC 7 122.375 86.793 134.552 1 91.5 ? C13 CRT 1001 d 1 HETATM 16 C C14 CRT . . . LC 7 122.524 87.696 136.899 1 94.09 ? C14 CRT 1001 d 1 HETATM 17 C C15 CRT . . . LC 7 123.928 87.892 137.035 1 93.88 ? C15 CRT 1001 d 1 HETATM 18 C C16 CRT . . . LC 7 124.519 87.902 138.252 1 95 ? C16 CRT 1001 d 1 HETATM 19 C C17 CRT . . . LC 7 125.924 88.092 138.502 1 90.35 ? C17 CRT 1001 d 1 HETATM 20 C C18 CRT . . . LC 7 126.869 87.696 137.412 1 88.44 ? C18 CRT 1001 d 1 HETATM 21 C C19 CRT . . . LC 7 126.283 88.62 139.701 1 89.43 ? C19 CRT 1001 d 1 HETATM 22 C C20 CRT . . . LC 7 127.605 88.92 140.152 1 90.26 ? C20 CRT 1001 d 1 HETATM 23 C C21 CRT . . . LC 7 127.926 89.613 141.281 1 89.45 ? C21 CRT 1001 d 1 HETATM 24 C C22 CRT . . . LC 7 129.234 89.964 141.76 1 92.49 ? C22 CRT 1001 d 1 HETATM 25 C C23 CRT . . . LC 7 129.513 90.592 142.941 1 92.93 ? C23 CRT 1001 d 1 HETATM 26 C C24 CRT . . . LC 7 128.424 90.981 143.903 1 91.73 ? C24 CRT 1001 d 1 HETATM 27 C C25 CRT . . . LC 7 130.895 90.896 143.236 1 88.06 ? C25 CRT 1001 d 1 HETATM 28 C C26 CRT . . . LC 7 131.345 91.835 144.11 1 86.87 ? C26 CRT 1001 d 1 HETATM 29 C C27 CRT . . . LC 7 132.735 92.117 144.343 1 87.47 ? C27 CRT 1001 d 1 HETATM 30 C C28 CRT . . . LC 7 133.264 93.037 145.2 1 91.01 ? C28 CRT 1001 d 1 HETATM 31 C C29 CRT . . . LC 7 132.44 93.922 146.088 1 91.7 ? C29 CRT 1001 d 1 HETATM 32 C C30 CRT . . . LC 7 134.703 93.173 145.259 1 89.45 ? C30 CRT 1001 d 1 HETATM 33 C C31 CRT . . . LC 7 135.377 94.207 145.82 1 86.22 ? C31 CRT 1001 d 1 HETATM 34 C C32 CRT . . . LC 7 136.814 94.289 145.835 1 88.36 ? C32 CRT 1001 d 1 HETATM 35 C C33 CRT . . . LC 7 137.59 95.294 146.312 1 87.53 ? C33 CRT 1001 d 1 HETATM 36 C C34 CRT . . . LC 7 137.058 96.541 146.946 1 85.71 ? C34 CRT 1001 d 1 HETATM 37 C C35 CRT . . . LC 7 139.036 95.16 146.211 1 88.88 ? C35 CRT 1001 d 1 HETATM 38 C C36 CRT . . . LC 7 139.819 95.799 145.333 1 87.88 ? C36 CRT 1001 d 1 HETATM 39 C C37 CRT . . . LC 7 141.3 95.632 145.266 1 85.89 ? C37 CRT 1001 d 1 HETATM 40 C C38 CRT . . . LC 7 142.05 96.807 144.62 1 85.24 ? C38 CRT 1001 d 1 HETATM 41 C C39 CRT . . . LC 7 143.558 96.551 144.618 1 84.16 ? C39 CRT 1001 d 1 HETATM 42 C C40 CRT . . . LC 7 141.554 96.976 143.186 1 88.91 ? C40 CRT 1001 d 1 HETATM 43 O O2 CRT . . . LC 7 141.71 97.931 145.416 1 91.26 ? O2 CRT 1001 d 1 HETATM 44 C C2M CRT . . . LC 7 142.432 99.113 145.185 1 86.36 ? C2M CRT 1001 d 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #