data_9K3Q
#
_model_server_result.job_id            3ADlH57nkmVscipHTBo_LQ 
_model_server_result.datetime_utc      '2025-03-04 08:10:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9k3q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"SA","auth_seq_id":101}' 
#
_entry.id    9K3Q 
#
_exptl.entry_id    9K3Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              596.925 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPIRILLOXANTHIN 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9K3Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9K3Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    35-meric 
_pdbx_struct_assembly.oligomeric_count      35 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 KA N N 
? 7 MA N N 
? 7 PA N N 
? 7 SA N N 
? 7 VA N N 
? 7 EB N N 
? 7 HB N N 
? 7 SB N N 
? 7 UB N N 
? 7 WB N N 
? 7 ZB N N 
? 7 CC N N 
? 7 FC N N 
? 7 IC N N 
? 7 LC N N 
? 7 NC N N 
? 7 PC N N 
#
_chem_comp.formula           'C42 H60 O2' 
_chem_comp.formula_weight    596.925 
_chem_comp.id                CRT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPIRILLOXANTHIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     RHODOVIOLASCIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1M O1 CRT sing 354 n n 
C1M H1M1 CRT sing 355 n n 
C1M H1M2 CRT sing 356 n n 
C1M H1M3 CRT sing 357 n n 
O1 C1 CRT sing 358 n n 
C1 C2 CRT sing 359 n n 
C1 C3 CRT sing 360 n n 
C1 C4 CRT sing 361 n n 
C2 H21A CRT sing 362 n n 
C2 H22A CRT sing 363 n n 
C2 H23 CRT sing 364 n n 
C3 H31A CRT sing 365 n n 
C3 H32A CRT sing 366 n n 
C3 H33 CRT sing 367 n n 
C4 C5 CRT sing 368 n n 
C4 H41 CRT sing 369 n n 
C4 H42 CRT sing 370 n n 
C5 C6 CRT doub 371 e n 
C5 H5 CRT sing 372 n n 
C6 C7 CRT sing 373 n n 
C6 H6 CRT sing 374 n n 
C7 C8 CRT sing 375 n n 
C7 C9 CRT doub 376 e n 
C8 H81 CRT sing 377 n n 
C8 H82 CRT sing 378 n n 
C8 H83 CRT sing 379 n n 
C9 C10 CRT sing 380 n n 
C9 H9 CRT sing 381 n n 
C10 C11 CRT doub 382 e n 
C10 H10 CRT sing 383 n n 
C11 C12 CRT sing 384 n n 
C11 H11 CRT sing 385 n n 
C12 C13 CRT sing 386 n n 
C12 C14 CRT doub 387 e n 
C13 H131 CRT sing 388 n n 
C13 H132 CRT sing 389 n n 
C13 H133 CRT sing 390 n n 
C14 C15 CRT sing 391 n n 
C14 H14 CRT sing 392 n n 
C15 C16 CRT doub 393 e n 
C15 H15 CRT sing 394 n n 
C16 C17 CRT sing 395 n n 
C16 H16 CRT sing 396 n n 
C17 C18 CRT sing 397 n n 
C17 C19 CRT doub 398 e n 
C18 H181 CRT sing 399 n n 
C18 H182 CRT sing 400 n n 
C18 H183 CRT sing 401 n n 
C19 C20 CRT sing 402 n n 
C19 H19 CRT sing 403 n n 
C20 C21 CRT doub 404 z n 
C20 H20 CRT sing 405 n n 
C21 C22 CRT sing 406 n n 
C21 H21 CRT sing 407 n n 
C22 C23 CRT doub 408 e n 
C22 H22 CRT sing 409 n n 
C23 C24 CRT sing 410 n n 
C23 C25 CRT sing 411 n n 
C24 H241 CRT sing 412 n n 
C24 H242 CRT sing 413 n n 
C24 H243 CRT sing 414 n n 
C25 C26 CRT doub 415 e n 
C25 H25 CRT sing 416 n n 
C26 C27 CRT sing 417 n n 
C26 H26 CRT sing 418 n n 
C27 C28 CRT doub 419 e n 
C27 H27 CRT sing 420 n n 
C28 C29 CRT sing 421 n n 
C28 C30 CRT sing 422 n n 
C29 H291 CRT sing 423 n n 
C29 H292 CRT sing 424 n n 
C29 H293 CRT sing 425 n n 
C30 C31 CRT doub 426 e n 
C30 H30 CRT sing 427 n n 
C31 C32 CRT sing 428 n n 
C31 H31 CRT sing 429 n n 
C32 C33 CRT doub 430 e n 
C32 H32 CRT sing 431 n n 
C33 C34 CRT sing 432 n n 
C33 C35 CRT sing 433 n n 
C34 H341 CRT sing 434 n n 
C34 H342 CRT sing 435 n n 
C34 H343 CRT sing 436 n n 
C35 C36 CRT doub 437 e n 
C35 H35 CRT sing 438 n n 
C36 C37 CRT sing 439 n n 
C36 H36 CRT sing 440 n n 
C37 C38 CRT sing 441 n n 
C37 H371 CRT sing 442 n n 
C37 H372 CRT sing 443 n n 
C38 C39 CRT sing 444 n n 
C38 C40 CRT sing 445 n n 
C38 O2 CRT sing 446 n n 
C39 H391 CRT sing 447 n n 
C39 H392 CRT sing 448 n n 
C39 H393 CRT sing 449 n n 
C40 H401 CRT sing 450 n n 
C40 H402 CRT sing 451 n n 
C40 H403 CRT sing 452 n n 
O2 C2M CRT sing 453 n n 
C2M H2M1 CRT sing 454 n n 
C2M H2M2 CRT sing 455 n n 
C2M H2M3 CRT sing 456 n n 
#
_atom_sites.entry_id                     9K3Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
JA 6 07D 1 1 1001 1001 07D 07D . 
KA 7 CRT 1 1 1002 1002 CRT CRT . 
LA 6 07D 2 1 1001 1001 07D 07D . 
MA 7 CRT 3 1 101 101 CRT CRT . 
NA 6 07D 3 1 102 102 07D 07D . 
OA 6 07D 4 1 1001 1001 07D 07D . 
PA 7 CRT 5 1 101 101 CRT CRT . 
QA 6 07D 5 1 102 102 07D 07D . 
RA 6 07D 6 1 1001 1001 07D 07D . 
SA 7 CRT 7 1 101 101 CRT CRT . 
TA 6 07D 7 1 102 102 07D 07D . 
UA 6 07D 8 1 1001 1001 07D 07D . 
VA 7 CRT 9 1 101 101 CRT CRT . 
WA 6 07D 9 1 102 102 07D 07D . 
XA 6 07D A 1 101 101 07D 07D . 
YA 6 07D D 1 1001 1001 07D 07D . 
ZA 6 07D E 1 1001 1001 07D 07D . 
AB 6 07D F 1 1001 1001 07D 07D . 
BB 6 07D G 1 1001 1001 07D 07D . 
CB 6 07D H 1 301 301 07D 07D . 
DB 8 FE H 1 302 407 FE FE . 
EB 7 CRT I 1 101 101 CRT CRT . 
FB 6 07D I 1 102 102 07D 07D . 
GB 6 07D J 1 1001 1001 07D 07D . 
HB 7 CRT K 1 101 101 CRT CRT . 
IB 6 07D K 1 102 102 07D 07D . 
JB 9 BPH L 1 1001 1001 BPH BPH . 
KB 10 U10 L 1 1002 1003 U10 U10 . 
LB 6 07D L 1 1003 1004 07D 07D . 
MB 6 07D L 1 1004 1005 07D 07D . 
NB 10 U10 L 1 1005 1006 U10 U10 . 
OB 9 BPH M 1 401 402 BPH BPH . 
PB 10 U10 M 1 402 403 U10 U10 . 
QB 6 07D M 1 403 404 07D 07D . 
RB 6 07D M 1 404 405 07D 07D . 
SB 7 CRT M 1 405 406 CRT CRT . 
TB 6 07D N 1 101 1002 07D 07D . 
UB 7 CRT O 1 101 101 CRT CRT . 
VB 6 07D O 1 102 102 07D 07D . 
WB 7 CRT Q 1 101 101 CRT CRT . 
XB 6 07D Q 1 102 102 07D 07D . 
YB 6 07D R 1 101 101 07D 07D . 
ZB 7 CRT S 1 101 101 CRT CRT . 
AC 6 07D S 1 102 102 07D 07D . 
BC 6 07D T 1 101 101 07D 07D . 
CC 7 CRT U 1 101 1002 CRT CRT . 
DC 6 07D U 1 102 1001 07D 07D . 
EC 6 07D V 1 1001 1001 07D 07D . 
FC 7 CRT W 1 1001 1001 CRT CRT . 
GC 6 07D W 1 1002 1001 07D 07D . 
HC 6 07D X 1 1001 1001 07D 07D . 
IC 7 CRT Y 1 101 101 CRT CRT . 
JC 6 07D Y 1 102 102 07D 07D . 
KC 6 07D Z 1 1001 1001 07D 07D . 
LC 7 CRT d 1 1001 1001 CRT CRT . 
MC 6 07D d 1 1002 1002 07D 07D . 
NC 7 CRT m 1 101 101 CRT CRT . 
OC 6 07D m 1 102 102 07D 07D . 
PC 7 CRT n 1 101 101 CRT CRT . 
QC 6 07D n 1 102 102 07D 07D . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1M CRT . . . SA 7 111.351 159.496 95.478 1 82.84 ? C1M CRT 101 7 1 
HETATM 2 O O1 CRT . . . SA 7 111.977 160.722 95.192 1 91.77 ? O1 CRT 101 7 1 
HETATM 3 C C1 CRT . . . SA 7 111.176 161.732 94.587 1 85.5 ? C1 CRT 101 7 1 
HETATM 4 C C2 CRT . . . SA 7 110.585 161.271 93.257 1 82.32 ? C2 CRT 101 7 1 
HETATM 5 C C3 CRT . . . SA 7 110.056 162.168 95.531 1 78.22 ? C3 CRT 101 7 1 
HETATM 6 C C4 CRT . . . SA 7 112.118 162.928 94.359 1 81.16 ? C4 CRT 101 7 1 
HETATM 7 C C5 CRT . . . SA 7 113.449 162.851 95.034 1 83.58 ? C5 CRT 101 7 1 
HETATM 8 C C6 CRT . . . SA 7 114.603 163.001 94.371 1 84.31 ? C6 CRT 101 7 1 
HETATM 9 C C7 CRT . . . SA 7 115.95 162.952 94.923 1 82.51 ? C7 CRT 101 7 1 
HETATM 10 C C8 CRT . . . SA 7 116.236 163.751 96.157 1 79.72 ? C8 CRT 101 7 1 
HETATM 11 C C9 CRT . . . SA 7 116.867 162.187 94.284 1 81.75 ? C9 CRT 101 7 1 
HETATM 12 C C10 CRT . . . SA 7 118.247 161.993 94.633 1 80.4 ? C10 CRT 101 7 1 
HETATM 13 C C11 CRT . . . SA 7 119.116 161.352 93.822 1 81.14 ? C11 CRT 101 7 1 
HETATM 14 C C12 CRT . . . SA 7 120.515 161.126 94.105 1 82.3 ? C12 CRT 101 7 1 
HETATM 15 C C13 CRT . . . SA 7 121.201 162.071 95.045 1 77.91 ? C13 CRT 101 7 1 
HETATM 16 C C14 CRT . . . SA 7 121.136 160.078 93.504 1 81.15 ? C14 CRT 101 7 1 
HETATM 17 C C15 CRT . . . SA 7 122.506 159.68 93.652 1 76.28 ? C15 CRT 101 7 1 
HETATM 18 C C16 CRT . . . SA 7 123.168 158.945 92.729 1 76.1 ? C16 CRT 101 7 1 
HETATM 19 C C17 CRT . . . SA 7 124.541 158.518 92.85 1 77.43 ? C17 CRT 101 7 1 
HETATM 20 C C18 CRT . . . SA 7 125.485 159.378 93.633 1 77.09 ? C18 CRT 101 7 1 
HETATM 21 C C19 CRT . . . SA 7 124.902 157.348 92.258 1 78.58 ? C19 CRT 101 7 1 
HETATM 22 C C20 CRT . . . SA 7 126.203 156.755 92.293 1 79.19 ? C20 CRT 101 7 1 
HETATM 23 C C21 CRT . . . SA 7 126.522 155.482 91.936 1 78.59 ? C21 CRT 101 7 1 
HETATM 24 C C22 CRT . . . SA 7 127.824 154.891 92.004 1 76.86 ? C22 CRT 101 7 1 
HETATM 25 C C23 CRT . . . SA 7 128.138 153.612 91.657 1 79.52 ? C23 CRT 101 7 1 
HETATM 26 C C24 CRT . . . SA 7 127.103 152.656 91.134 1 79.84 ? C24 CRT 101 7 1 
HETATM 27 C C25 CRT . . . SA 7 129.509 153.204 91.828 1 78.96 ? C25 CRT 101 7 1 
HETATM 28 C C26 CRT . . . SA 7 130.022 151.954 91.748 1 80.92 ? C26 CRT 101 7 1 
HETATM 29 C C27 CRT . . . SA 7 131.415 151.703 91.968 1 76.32 ? C27 CRT 101 7 1 
HETATM 30 C C28 CRT . . . SA 7 132.017 150.504 92.185 1 73.24 ? C28 CRT 101 7 1 
HETATM 31 C C29 CRT . . . SA 7 131.288 149.195 92.22 1 71.87 ? C29 CRT 101 7 1 
HETATM 32 C C30 CRT . . . SA 7 133.442 150.499 92.404 1 78.61 ? C30 CRT 101 7 1 
HETATM 33 C C31 CRT . . . SA 7 134.179 149.441 92.808 1 77.05 ? C31 CRT 101 7 1 
HETATM 34 C C32 CRT . . . SA 7 135.597 149.54 93.015 1 75.34 ? C32 CRT 101 7 1 
HETATM 35 C C33 CRT . . . SA 7 136.458 148.57 93.403 1 68.93 ? C33 CRT 101 7 1 
HETATM 36 C C34 CRT . . . SA 7 136.062 147.153 93.679 1 70.27 ? C34 CRT 101 7 1 
HETATM 37 C C35 CRT . . . SA 7 137.858 148.93 93.552 1 70.81 ? C35 CRT 101 7 1 
HETATM 38 C C36 CRT . . . SA 7 138.732 148.364 94.391 1 72.98 ? C36 CRT 101 7 1 
HETATM 39 C C37 CRT . . . SA 7 140.161 148.779 94.497 1 75.58 ? C37 CRT 101 7 1 
HETATM 40 C C38 CRT . . . SA 7 140.741 148.723 95.918 1 79.73 ? C38 CRT 101 7 1 
HETATM 41 C C39 CRT . . . SA 7 142.204 149.168 95.918 1 74.51 ? C39 CRT 101 7 1 
HETATM 42 C C40 CRT . . . SA 7 139.92 149.653 96.81 1 77.09 ? C40 CRT 101 7 1 
HETATM 43 O O2 CRT . . . SA 7 140.598 147.364 96.308 1 81.09 ? O2 CRT 101 7 1 
HETATM 44 C C2M CRT . . . SA 7 141.342 146.92 97.414 1 71.37 ? C2M CRT 101 7 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#