data_9K3Q # _model_server_result.job_id DesU9AsuCbvd8EVVDUmoGg _model_server_result.datetime_utc '2025-03-04 08:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9k3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PB","auth_seq_id":402}' # _entry.id 9K3Q # _exptl.entry_id 9K3Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9K3Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9K3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 35-meric _pdbx_struct_assembly.oligomeric_count 35 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 KB N N ? 10 NB N N ? 10 PB N N # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 743 n n C1 C6 U10 doub 744 n n C1 C1M U10 sing 745 n n C2 C3 U10 sing 746 n n C2 O2 U10 doub 747 n n C3 C4 U10 doub 748 n n C3 O3 U10 sing 749 n n C4 C5 U10 sing 750 n n C4 O4 U10 sing 751 n n C5 C6 U10 sing 752 n n C5 O5 U10 doub 753 n n C6 C7 U10 sing 754 n n C1M H1M1 U10 sing 755 n n C1M H1M2 U10 sing 756 n n C1M H1M3 U10 sing 757 n n C3M O3 U10 sing 758 n n C3M H3M1 U10 sing 759 n n C3M H3M2 U10 sing 760 n n C3M H3M3 U10 sing 761 n n C4M O4 U10 sing 762 n n C4M H4M1 U10 sing 763 n n C4M H4M2 U10 sing 764 n n C4M H4M3 U10 sing 765 n n C7 C8 U10 sing 766 n n C7 H71 U10 sing 767 n n C7 H72 U10 sing 768 n n C8 C9 U10 doub 769 e n C8 H8 U10 sing 770 n n C9 C10 U10 sing 771 n n C9 C11 U10 sing 772 n n C10 H101 U10 sing 773 n n C10 H102 U10 sing 774 n n C10 H103 U10 sing 775 n n C11 C12 U10 sing 776 n n C11 H111 U10 sing 777 n n C11 H112 U10 sing 778 n n C12 C13 U10 sing 779 n n C12 H121 U10 sing 780 n n C12 H122 U10 sing 781 n n C13 C14 U10 doub 782 e n C13 H13 U10 sing 783 n n C14 C15 U10 sing 784 n n C14 C16 U10 sing 785 n n C15 H151 U10 sing 786 n n C15 H152 U10 sing 787 n n C15 H153 U10 sing 788 n n C16 C17 U10 sing 789 n n C16 H161 U10 sing 790 n n C16 H162 U10 sing 791 n n C17 C18 U10 sing 792 n n C17 H171 U10 sing 793 n n C17 H172 U10 sing 794 n n C18 C19 U10 doub 795 e n C18 H18 U10 sing 796 n n C19 C20 U10 sing 797 n n C19 C21 U10 sing 798 n n C20 H201 U10 sing 799 n n C20 H202 U10 sing 800 n n C20 H203 U10 sing 801 n n C21 C22 U10 sing 802 n n C21 H211 U10 sing 803 n n C21 H212 U10 sing 804 n n C22 C23 U10 sing 805 n n C22 H221 U10 sing 806 n n C22 H222 U10 sing 807 n n C23 C24 U10 doub 808 e n C23 H23 U10 sing 809 n n C24 C25 U10 sing 810 n n C24 C26 U10 sing 811 n n C25 H251 U10 sing 812 n n C25 H252 U10 sing 813 n n C25 H253 U10 sing 814 n n C26 C27 U10 sing 815 n n C26 H261 U10 sing 816 n n C26 H262 U10 sing 817 n n C27 C28 U10 sing 818 n n C27 H271 U10 sing 819 n n C27 H272 U10 sing 820 n n C28 C29 U10 doub 821 e n C28 H28 U10 sing 822 n n C29 C30 U10 sing 823 n n C29 C31 U10 sing 824 n n C30 H301 U10 sing 825 n n C30 H302 U10 sing 826 n n C30 H303 U10 sing 827 n n C31 C32 U10 sing 828 n n C31 H311 U10 sing 829 n n C31 H312 U10 sing 830 n n C32 C33 U10 sing 831 n n C32 H321 U10 sing 832 n n C32 H322 U10 sing 833 n n C33 C34 U10 doub 834 e n C33 H33 U10 sing 835 n n C34 C35 U10 sing 836 n n C34 C36 U10 sing 837 n n C35 H351 U10 sing 838 n n C35 H352 U10 sing 839 n n C35 H353 U10 sing 840 n n C36 C37 U10 sing 841 n n C36 H361 U10 sing 842 n n C36 H362 U10 sing 843 n n C37 C38 U10 sing 844 n n C37 H371 U10 sing 845 n n C37 H372 U10 sing 846 n n C38 C39 U10 doub 847 e n C38 H38 U10 sing 848 n n C39 C40 U10 sing 849 n n C39 C41 U10 sing 850 n n C40 H401 U10 sing 851 n n C40 H402 U10 sing 852 n n C40 H403 U10 sing 853 n n C41 C42 U10 sing 854 n n C41 H411 U10 sing 855 n n C41 H412 U10 sing 856 n n C42 C43 U10 sing 857 n n C42 H421 U10 sing 858 n n C42 H422 U10 sing 859 n n C43 C44 U10 doub 860 e n C43 H43 U10 sing 861 n n C44 C45 U10 sing 862 n n C44 C46 U10 sing 863 n n C45 H451 U10 sing 864 n n C45 H452 U10 sing 865 n n C45 H453 U10 sing 866 n n C46 C47 U10 sing 867 n n C46 H461 U10 sing 868 n n C46 H462 U10 sing 869 n n C47 C48 U10 sing 870 n n C47 H471 U10 sing 871 n n C47 H472 U10 sing 872 n n C48 C49 U10 doub 873 e n C48 H48 U10 sing 874 n n C49 C50 U10 sing 875 n n C49 C51 U10 sing 876 n n C50 H501 U10 sing 877 n n C50 H502 U10 sing 878 n n C50 H503 U10 sing 879 n n C51 C52 U10 sing 880 n n C51 H511 U10 sing 881 n n C51 H512 U10 sing 882 n n C52 C53 U10 sing 883 n n C52 H521 U10 sing 884 n n C52 H522 U10 sing 885 n n C53 C54 U10 doub 886 n n C53 H53 U10 sing 887 n n C54 C55 U10 sing 888 n n C54 C56 U10 sing 889 n n C55 H551 U10 sing 890 n n C55 H552 U10 sing 891 n n C55 H553 U10 sing 892 n n C56 H561 U10 sing 893 n n C56 H562 U10 sing 894 n n C56 H563 U10 sing 895 n n # _atom_sites.entry_id 9K3Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code JA 6 07D 1 1 1001 1001 07D 07D . KA 7 CRT 1 1 1002 1002 CRT CRT . LA 6 07D 2 1 1001 1001 07D 07D . MA 7 CRT 3 1 101 101 CRT CRT . NA 6 07D 3 1 102 102 07D 07D . OA 6 07D 4 1 1001 1001 07D 07D . PA 7 CRT 5 1 101 101 CRT CRT . QA 6 07D 5 1 102 102 07D 07D . RA 6 07D 6 1 1001 1001 07D 07D . SA 7 CRT 7 1 101 101 CRT CRT . TA 6 07D 7 1 102 102 07D 07D . UA 6 07D 8 1 1001 1001 07D 07D . VA 7 CRT 9 1 101 101 CRT CRT . WA 6 07D 9 1 102 102 07D 07D . XA 6 07D A 1 101 101 07D 07D . YA 6 07D D 1 1001 1001 07D 07D . ZA 6 07D E 1 1001 1001 07D 07D . AB 6 07D F 1 1001 1001 07D 07D . BB 6 07D G 1 1001 1001 07D 07D . CB 6 07D H 1 301 301 07D 07D . DB 8 FE H 1 302 407 FE FE . EB 7 CRT I 1 101 101 CRT CRT . FB 6 07D I 1 102 102 07D 07D . GB 6 07D J 1 1001 1001 07D 07D . HB 7 CRT K 1 101 101 CRT CRT . IB 6 07D K 1 102 102 07D 07D . JB 9 BPH L 1 1001 1001 BPH BPH . KB 10 U10 L 1 1002 1003 U10 U10 . LB 6 07D L 1 1003 1004 07D 07D . MB 6 07D L 1 1004 1005 07D 07D . NB 10 U10 L 1 1005 1006 U10 U10 . OB 9 BPH M 1 401 402 BPH BPH . PB 10 U10 M 1 402 403 U10 U10 . QB 6 07D M 1 403 404 07D 07D . RB 6 07D M 1 404 405 07D 07D . SB 7 CRT M 1 405 406 CRT CRT . TB 6 07D N 1 101 1002 07D 07D . UB 7 CRT O 1 101 101 CRT CRT . VB 6 07D O 1 102 102 07D 07D . WB 7 CRT Q 1 101 101 CRT CRT . XB 6 07D Q 1 102 102 07D 07D . YB 6 07D R 1 101 101 07D 07D . ZB 7 CRT S 1 101 101 CRT CRT . AC 6 07D S 1 102 102 07D 07D . BC 6 07D T 1 101 101 07D 07D . CC 7 CRT U 1 101 1002 CRT CRT . DC 6 07D U 1 102 1001 07D 07D . EC 6 07D V 1 1001 1001 07D 07D . FC 7 CRT W 1 1001 1001 CRT CRT . GC 6 07D W 1 1002 1001 07D 07D . HC 6 07D X 1 1001 1001 07D 07D . IC 7 CRT Y 1 101 101 CRT CRT . JC 6 07D Y 1 102 102 07D 07D . KC 6 07D Z 1 1001 1001 07D 07D . LC 7 CRT d 1 1001 1001 CRT CRT . MC 6 07D d 1 1002 1002 07D 07D . NC 7 CRT m 1 101 101 CRT CRT . OC 6 07D m 1 102 102 07D 07D . PC 7 CRT n 1 101 101 CRT CRT . QC 6 07D n 1 102 102 07D 07D . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . PB 10 118.299 134.241 142.671 1 51.02 ? C1 U10 402 M 1 HETATM 2 C C2 U10 . . . PB 10 117.16 134.103 141.896 1 55.3 ? C2 U10 402 M 1 HETATM 3 C C3 U10 . . . PB 10 115.967 134.718 142.269 1 56.39 ? C3 U10 402 M 1 HETATM 4 C C4 U10 . . . PB 10 115.924 135.479 143.442 1 55.18 ? C4 U10 402 M 1 HETATM 5 C C5 U10 . . . PB 10 117.077 135.612 144.208 1 48.81 ? C5 U10 402 M 1 HETATM 6 C C6 U10 . . . PB 10 118.265 135.001 143.831 1 44.24 ? C6 U10 402 M 1 HETATM 7 C C1M U10 . . . PB 10 119.56 133.562 142.228 1 48.81 ? C1M U10 402 M 1 HETATM 8 C C3M U10 . . . PB 10 114.275 133.99 140.887 1 56.1 ? C3M U10 402 M 1 HETATM 9 C C4M U10 . . . PB 10 113.741 136.246 143.69 1 53.23 ? C4M U10 402 M 1 HETATM 10 C C7 U10 . . . PB 10 119.431 134.976 144.796 1 48.56 ? C7 U10 402 M 1 HETATM 11 C C8 U10 . . . PB 10 120.48 135.984 144.392 1 53.99 ? C8 U10 402 M 1 HETATM 12 C C9 U10 . . . PB 10 120.726 137.201 145.176 1 54.12 ? C9 U10 402 M 1 HETATM 13 C C10 U10 . . . PB 10 120.022 137.417 146.481 1 59.43 ? C10 U10 402 M 1 HETATM 14 C C11 U10 . . . PB 10 121.692 138.237 144.66 1 51.08 ? C11 U10 402 M 1 HETATM 15 C C12 U10 . . . PB 10 122.968 138.211 145.489 1 46.43 ? C12 U10 402 M 1 HETATM 16 C C13 U10 . . . PB 10 123.679 136.897 145.281 1 53.04 ? C13 U10 402 M 1 HETATM 17 C C14 U10 . . . PB 10 125.112 136.868 144.96 1 55.46 ? C14 U10 402 M 1 HETATM 18 C C15 U10 . . . PB 10 125.823 138.125 144.56 1 52.81 ? C15 U10 402 M 1 HETATM 19 C C16 U10 . . . PB 10 125.869 135.567 145.033 1 57.17 ? C16 U10 402 M 1 HETATM 20 C C17 U10 . . . PB 10 127.012 135.723 146.025 1 52.77 ? C17 U10 402 M 1 HETATM 21 C C18 U10 . . . PB 10 126.505 135.431 147.415 1 55.04 ? C18 U10 402 M 1 HETATM 22 C C19 U10 . . . PB 10 127.218 135.958 148.586 1 56.12 ? C19 U10 402 M 1 HETATM 23 C C20 U10 . . . PB 10 128.489 136.731 148.404 1 57.08 ? C20 U10 402 M 1 HETATM 24 C C21 U10 . . . PB 10 126.669 135.725 149.97 1 56.4 ? C21 U10 402 M 1 HETATM 25 C C22 U10 . . . PB 10 127.357 134.523 150.601 1 53.69 ? C22 U10 402 M 1 HETATM 26 C C23 U10 . . . PB 10 126.83 134.352 152.004 1 55.38 ? C23 U10 402 M 1 HETATM 27 C C24 U10 . . . PB 10 126.609 133.016 152.57 1 53.03 ? C24 U10 402 M 1 HETATM 28 C C25 U10 . . . PB 10 127.199 131.809 151.906 1 50.23 ? C25 U10 402 M 1 HETATM 29 C C26 U10 . . . PB 10 125.782 132.869 153.824 1 58.61 ? C26 U10 402 M 1 HETATM 30 C C27 U10 . . . PB 10 126.671 132.5 155.003 1 58.59 ? C27 U10 402 M 1 HETATM 31 C C28 U10 . . . PB 10 125.835 131.792 156.042 1 56.89 ? C28 U10 402 M 1 HETATM 32 C C29 U10 . . . PB 10 126.471 131.127 157.188 1 56.58 ? C29 U10 402 M 1 HETATM 33 C C30 U10 . . . PB 10 127.965 131.111 157.309 1 60.29 ? C30 U10 402 M 1 HETATM 34 C C31 U10 . . . PB 10 125.626 130.458 158.245 1 57.5 ? C31 U10 402 M 1 HETATM 35 C C32 U10 . . . PB 10 124.56 129.589 157.59 1 61.77 ? C32 U10 402 M 1 HETATM 36 C C33 U10 . . . PB 10 123.394 129.454 158.539 1 68.38 ? C33 U10 402 M 1 HETATM 37 C C34 U10 . . . PB 10 123.321 128.326 159.478 1 63.89 ? C34 U10 402 M 1 HETATM 38 C C35 U10 . . . PB 10 124.066 127.063 159.173 1 55.61 ? C35 U10 402 M 1 HETATM 39 C C36 U10 . . . PB 10 122.496 128.435 160.739 1 53.51 ? C36 U10 402 M 1 HETATM 40 C C37 U10 . . . PB 10 122.341 129.906 161.105 1 55.98 ? C37 U10 402 M 1 HETATM 41 C C38 U10 . . . PB 10 123.62 130.449 161.699 1 58.18 ? C38 U10 402 M 1 HETATM 42 C C39 U10 . . . PB 10 123.598 131.682 162.498 1 64.22 ? C39 U10 402 M 1 HETATM 43 C C40 U10 . . . PB 10 122.353 132.519 162.539 1 60.86 ? C40 U10 402 M 1 HETATM 44 C C41 U10 . . . PB 10 124.823 132.123 163.263 1 56.49 ? C41 U10 402 M 1 HETATM 45 C C42 U10 . . . PB 10 125.162 131.117 164.356 1 63.12 ? C42 U10 402 M 1 HETATM 46 C C43 U10 . . . PB 10 123.926 130.819 165.17 1 66.85 ? C43 U10 402 M 1 HETATM 47 C C44 U10 . . . PB 10 124.032 130.424 166.581 1 66.91 ? C44 U10 402 M 1 HETATM 48 C C45 U10 . . . PB 10 125.293 130.704 167.346 1 52.34 ? C45 U10 402 M 1 HETATM 49 C C46 U10 . . . PB 10 122.865 129.747 167.259 1 64.25 ? C46 U10 402 M 1 HETATM 50 C C47 U10 . . . PB 10 122.614 128.392 166.608 1 61.72 ? C47 U10 402 M 1 HETATM 51 C C48 U10 . . . PB 10 123.878 127.57 166.691 1 68 ? C48 U10 402 M 1 HETATM 52 C C49 U10 . . . PB 10 123.835 126.106 166.586 1 64.89 ? C49 U10 402 M 1 HETATM 53 C C50 U10 . . . PB 10 122.616 125.426 166.037 1 54.33 ? C50 U10 402 M 1 HETATM 54 C C51 U10 . . . PB 10 125.021 125.293 167.045 1 57.49 ? C51 U10 402 M 1 HETATM 55 C C52 U10 . . . PB 10 126.173 125.349 166.05 1 62.53 ? C52 U10 402 M 1 HETATM 56 C C53 U10 . . . PB 10 127.461 125.168 166.817 1 63.88 ? C53 U10 402 M 1 HETATM 57 C C54 U10 . . . PB 10 128.642 125.992 166.528 1 67.09 ? C54 U10 402 M 1 HETATM 58 C C55 U10 . . . PB 10 129.121 127.01 167.52 1 56.93 ? C55 U10 402 M 1 HETATM 59 C C56 U10 . . . PB 10 129.384 125.789 165.242 1 64.51 ? C56 U10 402 M 1 HETATM 60 O O2 U10 . . . PB 10 117.313 133.723 140.737 1 57.77 ? O2 U10 402 M 1 HETATM 61 O O3 U10 . . . PB 10 115.16 134.975 141.373 1 53.24 ? O3 U10 402 M 1 HETATM 62 O O4 U10 . . . PB 10 114.873 135.501 144.089 1 54.98 ? O4 U10 402 M 1 HETATM 63 O O5 U10 . . . PB 10 116.957 135.984 145.372 1 55.22 ? O5 U10 402 M 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 63 #