data_9KEB
#
_model_server_result.job_id            PzsL659mKxGzQzLThvinJA 
_model_server_result.datetime_utc      '2025-08-28 04:36:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9keb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    9KEB 
#
_exptl.entry_id    9KEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              220.311 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[2-(4-methyl-1,4-diazepan-1-yl)phenyl]methanol' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9KEB 
_cell.length_a            69.759 
_cell.length_b            69.759 
_cell.length_c            79.284 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9KEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H20 N2 O' 
_chem_comp.formula_weight    220.311 
_chem_comp.id                A1EE8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[2-(4-methyl-1,4-diazepan-1-yl)phenyl]methanol' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     915707-55-0 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 A1EE8 sing 1 n n 
N1 C6 A1EE8 sing 2 n n 
N1 C2 A1EE8 sing 3 n n 
C6 C5 A1EE8 sing 4 n n 
C2 C3 A1EE8 sing 5 n n 
C5 N2 A1EE8 sing 6 n n 
C3 C4 A1EE8 sing 7 n n 
N2 C4 A1EE8 sing 8 n n 
N2 C7 A1EE8 sing 9 n n 
C7 C8 A1EE8 doub 10 n y 
C7 C12 A1EE8 sing 11 n y 
C13 C12 A1EE8 sing 12 n n 
C13 O1 A1EE8 sing 13 n n 
C8 C9 A1EE8 sing 14 n y 
C12 C11 A1EE8 doub 15 n y 
C9 C10 A1EE8 doub 16 n y 
C11 C10 A1EE8 sing 17 n y 
C4 H2 A1EE8 sing 18 n n 
C4 H3 A1EE8 sing 19 n n 
C5 H4 A1EE8 sing 20 n n 
C5 H5 A1EE8 sing 21 n n 
C6 H6 A1EE8 sing 22 n n 
C6 H7 A1EE8 sing 23 n n 
C8 H8 A1EE8 sing 24 n n 
C10 H9 A1EE8 sing 25 n n 
C13 H10 A1EE8 sing 26 n n 
C13 H11 A1EE8 sing 27 n n 
C1 H12 A1EE8 sing 28 n n 
C1 H13 A1EE8 sing 29 n n 
C1 H14 A1EE8 sing 30 n n 
C11 H15 A1EE8 sing 31 n n 
C2 H16 A1EE8 sing 32 n n 
C2 H17 A1EE8 sing 33 n n 
C3 H18 A1EE8 sing 34 n n 
C3 H19 A1EE8 sing 35 n n 
C9 H20 A1EE8 sing 36 n n 
O1 H21 A1EE8 sing 37 n n 
#
_atom_sites.entry_id                     9KEB 
_atom_sites.fract_transf_matrix[1][1]    0.014335 
_atom_sites.fract_transf_matrix[1][2]    0.008276 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016553 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1EE8 A 1 301 301 A1EE8 LIG . 
C 3 PE8 A 1 302 302 PE8 PE8 . 
D 4 SO4 A 1 303 1 SO4 SO4 . 
E 4 SO4 A 1 304 2 SO4 SO4 . 
F 5 HOH A 1 401 94 HOH HOH . 
F 5 HOH A 2 402 99 HOH HOH . 
F 5 HOH A 3 403 52 HOH HOH . 
F 5 HOH A 4 404 137 HOH HOH . 
F 5 HOH A 5 405 81 HOH HOH . 
F 5 HOH A 6 406 65 HOH HOH . 
F 5 HOH A 7 407 146 HOH HOH . 
F 5 HOH A 8 408 90 HOH HOH . 
F 5 HOH A 9 409 59 HOH HOH . 
F 5 HOH A 10 410 125 HOH HOH . 
F 5 HOH A 11 411 38 HOH HOH . 
F 5 HOH A 12 412 10 HOH HOH . 
F 5 HOH A 13 413 168 HOH HOH . 
F 5 HOH A 14 414 76 HOH HOH . 
F 5 HOH A 15 415 124 HOH HOH . 
F 5 HOH A 16 416 159 HOH HOH . 
F 5 HOH A 17 417 8 HOH HOH . 
F 5 HOH A 18 418 110 HOH HOH . 
F 5 HOH A 19 419 111 HOH HOH . 
F 5 HOH A 20 420 19 HOH HOH . 
F 5 HOH A 21 421 85 HOH HOH . 
F 5 HOH A 22 422 63 HOH HOH . 
F 5 HOH A 23 423 122 HOH HOH . 
F 5 HOH A 24 424 14 HOH HOH . 
F 5 HOH A 25 425 34 HOH HOH . 
F 5 HOH A 26 426 62 HOH HOH . 
F 5 HOH A 27 427 7 HOH HOH . 
F 5 HOH A 28 428 25 HOH HOH . 
F 5 HOH A 29 429 158 HOH HOH . 
F 5 HOH A 30 430 102 HOH HOH . 
F 5 HOH A 31 431 23 HOH HOH . 
F 5 HOH A 32 432 70 HOH HOH . 
F 5 HOH A 33 433 78 HOH HOH . 
F 5 HOH A 34 434 12 HOH HOH . 
F 5 HOH A 35 435 3 HOH HOH . 
F 5 HOH A 36 436 40 HOH HOH . 
F 5 HOH A 37 437 105 HOH HOH . 
F 5 HOH A 38 438 48 HOH HOH . 
F 5 HOH A 39 439 17 HOH HOH . 
F 5 HOH A 40 440 58 HOH HOH . 
F 5 HOH A 41 441 117 HOH HOH . 
F 5 HOH A 42 442 95 HOH HOH . 
F 5 HOH A 43 443 33 HOH HOH . 
F 5 HOH A 44 444 104 HOH HOH . 
F 5 HOH A 45 445 44 HOH HOH . 
F 5 HOH A 46 446 129 HOH HOH . 
F 5 HOH A 47 447 41 HOH HOH . 
F 5 HOH A 48 448 80 HOH HOH . 
F 5 HOH A 49 449 118 HOH HOH . 
F 5 HOH A 50 450 75 HOH HOH . 
F 5 HOH A 51 451 89 HOH HOH . 
F 5 HOH A 52 452 148 HOH HOH . 
F 5 HOH A 53 453 5 HOH HOH . 
F 5 HOH A 54 454 36 HOH HOH . 
F 5 HOH A 55 455 87 HOH HOH . 
F 5 HOH A 56 456 42 HOH HOH . 
F 5 HOH A 57 457 51 HOH HOH . 
F 5 HOH A 58 458 128 HOH HOH . 
F 5 HOH A 59 459 56 HOH HOH . 
F 5 HOH A 60 460 100 HOH HOH . 
F 5 HOH A 61 461 1 HOH HOH . 
F 5 HOH A 62 462 9 HOH HOH . 
F 5 HOH A 63 463 54 HOH HOH . 
F 5 HOH A 64 464 30 HOH HOH . 
F 5 HOH A 65 465 47 HOH HOH . 
F 5 HOH A 66 466 169 HOH HOH . 
F 5 HOH A 67 467 155 HOH HOH . 
F 5 HOH A 68 468 2 HOH HOH . 
F 5 HOH A 69 469 135 HOH HOH . 
F 5 HOH A 70 470 20 HOH HOH . 
F 5 HOH A 71 471 142 HOH HOH . 
F 5 HOH A 72 472 11 HOH HOH . 
F 5 HOH A 73 473 26 HOH HOH . 
F 5 HOH A 74 474 67 HOH HOH . 
F 5 HOH A 75 475 91 HOH HOH . 
F 5 HOH A 76 476 108 HOH HOH . 
F 5 HOH A 77 477 35 HOH HOH . 
F 5 HOH A 78 478 18 HOH HOH . 
F 5 HOH A 79 479 109 HOH HOH . 
F 5 HOH A 80 480 55 HOH HOH . 
F 5 HOH A 81 481 60 HOH HOH . 
F 5 HOH A 82 482 145 HOH HOH . 
F 5 HOH A 83 483 121 HOH HOH . 
F 5 HOH A 84 484 15 HOH HOH . 
F 5 HOH A 85 485 149 HOH HOH . 
F 5 HOH A 86 486 71 HOH HOH . 
F 5 HOH A 87 487 31 HOH HOH . 
F 5 HOH A 88 488 64 HOH HOH . 
F 5 HOH A 89 489 29 HOH HOH . 
F 5 HOH A 90 490 106 HOH HOH . 
F 5 HOH A 91 491 156 HOH HOH . 
F 5 HOH A 92 492 115 HOH HOH . 
F 5 HOH A 93 493 83 HOH HOH . 
F 5 HOH A 94 494 61 HOH HOH . 
F 5 HOH A 95 495 27 HOH HOH . 
F 5 HOH A 96 496 82 HOH HOH . 
F 5 HOH A 97 497 163 HOH HOH . 
F 5 HOH A 98 498 140 HOH HOH . 
F 5 HOH A 99 499 69 HOH HOH . 
F 5 HOH A 100 500 4 HOH HOH . 
F 5 HOH A 101 501 16 HOH HOH . 
F 5 HOH A 102 502 37 HOH HOH . 
F 5 HOH A 103 503 157 HOH HOH . 
F 5 HOH A 104 504 13 HOH HOH . 
F 5 HOH A 105 505 120 HOH HOH . 
F 5 HOH A 106 506 50 HOH HOH . 
F 5 HOH A 107 507 112 HOH HOH . 
F 5 HOH A 108 508 161 HOH HOH . 
F 5 HOH A 109 509 49 HOH HOH . 
F 5 HOH A 110 510 133 HOH HOH . 
F 5 HOH A 111 511 22 HOH HOH . 
F 5 HOH A 112 512 160 HOH HOH . 
F 5 HOH A 113 513 144 HOH HOH . 
F 5 HOH A 114 514 114 HOH HOH . 
F 5 HOH A 115 515 152 HOH HOH . 
F 5 HOH A 116 516 32 HOH HOH . 
F 5 HOH A 117 517 119 HOH HOH . 
F 5 HOH A 118 518 165 HOH HOH . 
F 5 HOH A 119 519 147 HOH HOH . 
F 5 HOH A 120 520 170 HOH HOH . 
F 5 HOH A 121 521 6 HOH HOH . 
F 5 HOH A 122 522 77 HOH HOH . 
F 5 HOH A 123 523 57 HOH HOH . 
F 5 HOH A 124 524 86 HOH HOH . 
F 5 HOH A 125 525 162 HOH HOH . 
F 5 HOH A 126 526 24 HOH HOH . 
F 5 HOH A 127 527 143 HOH HOH . 
F 5 HOH A 128 528 127 HOH HOH . 
F 5 HOH A 129 529 151 HOH HOH . 
F 5 HOH A 130 530 116 HOH HOH . 
F 5 HOH A 131 531 141 HOH HOH . 
F 5 HOH A 132 532 134 HOH HOH . 
F 5 HOH A 133 533 84 HOH HOH . 
F 5 HOH A 134 534 172 HOH HOH . 
F 5 HOH A 135 535 79 HOH HOH . 
F 5 HOH A 136 536 101 HOH HOH . 
F 5 HOH A 137 537 132 HOH HOH . 
F 5 HOH A 138 538 98 HOH HOH . 
F 5 HOH A 139 539 72 HOH HOH . 
F 5 HOH A 140 540 96 HOH HOH . 
F 5 HOH A 141 541 68 HOH HOH . 
F 5 HOH A 142 542 97 HOH HOH . 
F 5 HOH A 143 543 28 HOH HOH . 
F 5 HOH A 144 544 150 HOH HOH . 
F 5 HOH A 145 545 43 HOH HOH . 
F 5 HOH A 146 546 92 HOH HOH . 
F 5 HOH A 147 547 138 HOH HOH . 
F 5 HOH A 148 548 107 HOH HOH . 
F 5 HOH A 149 549 113 HOH HOH . 
F 5 HOH A 150 550 126 HOH HOH . 
F 5 HOH A 151 551 103 HOH HOH . 
F 5 HOH A 152 552 171 HOH HOH . 
F 5 HOH A 153 553 21 HOH HOH . 
F 5 HOH A 154 554 123 HOH HOH . 
F 5 HOH A 155 555 88 HOH HOH . 
F 5 HOH A 156 556 45 HOH HOH . 
F 5 HOH A 157 557 73 HOH HOH . 
F 5 HOH A 158 558 131 HOH HOH . 
F 5 HOH A 159 559 39 HOH HOH . 
F 5 HOH A 160 560 74 HOH HOH . 
F 5 HOH A 161 561 46 HOH HOH . 
F 5 HOH A 162 562 53 HOH HOH . 
F 5 HOH A 163 563 136 HOH HOH . 
F 5 HOH A 164 564 173 HOH HOH . 
F 5 HOH A 165 565 130 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 A1EE8 . . . B 2 41.052 -15.266 19.213 1 57.02 ? N1 A1EE8 301 A 1 
HETATM 2 C C4 A1EE8 . . . B 2 41.53 -15.567 22.276 1 51.57 ? C4 A1EE8 301 A 1 
HETATM 3 C C5 A1EE8 . . . B 2 40.124 -16.992 20.773 1 45.59 ? C5 A1EE8 301 A 1 
HETATM 4 C C6 A1EE8 . . . B 2 41.095 -16.666 19.664 1 49.35 ? C6 A1EE8 301 A 1 
HETATM 5 C C7 A1EE8 . . . B 2 40.246 -17.443 23.201 1 31.52 ? C7 A1EE8 301 A 1 
HETATM 6 C C8 A1EE8 . . . B 2 41.105 -18.458 23.619 1 37.82 ? C8 A1EE8 301 A 1 
HETATM 7 C C10 A1EE8 . . . B 2 39.655 -18.963 25.445 1 29.11 ? C10 A1EE8 301 A 1 
HETATM 8 C C13 A1EE8 . . . B 2 38.113 -16.072 23.548 1 39.2 ? C13 A1EE8 301 A 1 
HETATM 9 C C1 A1EE8 . . . B 2 39.67 -14.839 18.956 1 56.59 ? C1 A1EE8 301 A 1 
HETATM 10 C C11 A1EE8 . . . B 2 38.808 -17.949 25.05 1 32.27 ? C11 A1EE8 301 A 1 
HETATM 11 C C12 A1EE8 . . . B 2 39.075 -17.169 23.926 1 38.93 ? C12 A1EE8 301 A 1 
HETATM 12 C C2 A1EE8 . . . B 2 41.736 -14.318 20.097 1 51.99 ? C2 A1EE8 301 A 1 
HETATM 13 C C3 A1EE8 . . . B 2 41.197 -14.298 21.505 1 51.4 ? C3 A1EE8 301 A 1 
HETATM 14 C C9 A1EE8 . . . B 2 40.804 -19.213 24.735 1 35.04 ? C9 A1EE8 301 A 1 
HETATM 15 N N2 A1EE8 . . . B 2 40.582 -16.672 22.119 1 44.64 ? N2 A1EE8 301 A 1 
HETATM 16 O O1 A1EE8 . . . B 2 36.866 -16.209 24.219 1 38.71 ? O1 A1EE8 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           368 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#