data_9KEC # _model_server_result.job_id HfpODLDaspcMfHKBUzq34g _model_server_result.datetime_utc '2025-08-28 08:57:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9kec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 9KEC # _exptl.entry_id 9KEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 211.233 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(4-fluorophenyl)methyl]-4-oxidanyl-butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9KEC _cell.length_a 69.431 _cell.length_b 69.431 _cell.length_c 79.191 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H14 F N O2' _chem_comp.formula_weight 211.233 _chem_comp.id A1EE6 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(4-fluorophenyl)methyl]-4-oxidanyl-butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Maybridge3_001920 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C9 A1EE6 sing 1 n n C9 C8 A1EE6 doub 2 n y C9 C10 A1EE6 sing 3 n y C8 C7 A1EE6 sing 4 n y C10 C11 A1EE6 doub 5 n y C7 C6 A1EE6 doub 6 n y C11 C6 A1EE6 sing 7 n y C6 C5 A1EE6 sing 8 n n C5 N1 A1EE6 sing 9 n n N1 C4 A1EE6 sing 10 n n C4 C3 A1EE6 sing 11 n n C4 O2 A1EE6 doub 12 n n C3 C2 A1EE6 sing 13 n n O1 C1 A1EE6 sing 14 n n C2 C1 A1EE6 sing 15 n n N1 H1 A1EE6 sing 16 n n C5 H2 A1EE6 sing 17 n n C5 H3 A1EE6 sing 18 n n C7 H4 A1EE6 sing 19 n n C8 H5 A1EE6 sing 20 n n C10 H6 A1EE6 sing 21 n n C1 H7 A1EE6 sing 22 n n C1 H8 A1EE6 sing 23 n n C11 H9 A1EE6 sing 24 n n C2 H10 A1EE6 sing 25 n n C2 H11 A1EE6 sing 26 n n C3 H12 A1EE6 sing 27 n n C3 H13 A1EE6 sing 28 n n O1 H14 A1EE6 sing 29 n n # _atom_sites.entry_id 9KEC _atom_sites.fract_transf_matrix[1][1] 0.014403 _atom_sites.fract_transf_matrix[1][2] 0.008315 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PE8 A 1 201 302 PE8 PE8 . C 3 A1EE6 A 1 202 301 A1EE6 LIG . D 4 SO4 A 1 203 1 SO4 SO4 . E 4 SO4 A 1 204 2 SO4 SO4 . F 4 SO4 A 1 205 3 SO4 SO4 . G 5 HOH A 1 301 93 HOH HOH . G 5 HOH A 2 302 26 HOH HOH . G 5 HOH A 3 303 103 HOH HOH . G 5 HOH A 4 304 142 HOH HOH . G 5 HOH A 5 305 144 HOH HOH . G 5 HOH A 6 306 149 HOH HOH . G 5 HOH A 7 307 118 HOH HOH . G 5 HOH A 8 308 35 HOH HOH . G 5 HOH A 9 309 57 HOH HOH . G 5 HOH A 10 310 89 HOH HOH . G 5 HOH A 11 311 148 HOH HOH . G 5 HOH A 12 312 99 HOH HOH . G 5 HOH A 13 313 134 HOH HOH . G 5 HOH A 14 314 30 HOH HOH . G 5 HOH A 15 315 38 HOH HOH . G 5 HOH A 16 316 59 HOH HOH . G 5 HOH A 17 317 65 HOH HOH . G 5 HOH A 18 318 56 HOH HOH . G 5 HOH A 19 319 20 HOH HOH . G 5 HOH A 20 320 120 HOH HOH . G 5 HOH A 21 321 77 HOH HOH . G 5 HOH A 22 322 10 HOH HOH . G 5 HOH A 23 323 2 HOH HOH . G 5 HOH A 24 324 140 HOH HOH . G 5 HOH A 25 325 146 HOH HOH . G 5 HOH A 26 326 15 HOH HOH . G 5 HOH A 27 327 48 HOH HOH . G 5 HOH A 28 328 66 HOH HOH . G 5 HOH A 29 329 78 HOH HOH . G 5 HOH A 30 330 33 HOH HOH . G 5 HOH A 31 331 12 HOH HOH . G 5 HOH A 32 332 25 HOH HOH . G 5 HOH A 33 333 21 HOH HOH . G 5 HOH A 34 334 73 HOH HOH . G 5 HOH A 35 335 105 HOH HOH . G 5 HOH A 36 336 85 HOH HOH . G 5 HOH A 37 337 49 HOH HOH . G 5 HOH A 38 338 44 HOH HOH . G 5 HOH A 39 339 150 HOH HOH . G 5 HOH A 40 340 97 HOH HOH . G 5 HOH A 41 341 19 HOH HOH . G 5 HOH A 42 342 139 HOH HOH . G 5 HOH A 43 343 8 HOH HOH . G 5 HOH A 44 344 9 HOH HOH . G 5 HOH A 45 345 5 HOH HOH . G 5 HOH A 46 346 54 HOH HOH . G 5 HOH A 47 347 80 HOH HOH . G 5 HOH A 48 348 28 HOH HOH . G 5 HOH A 49 349 36 HOH HOH . G 5 HOH A 50 350 6 HOH HOH . G 5 HOH A 51 351 14 HOH HOH . G 5 HOH A 52 352 51 HOH HOH . G 5 HOH A 53 353 109 HOH HOH . G 5 HOH A 54 354 128 HOH HOH . G 5 HOH A 55 355 41 HOH HOH . G 5 HOH A 56 356 29 HOH HOH . G 5 HOH A 57 357 83 HOH HOH . G 5 HOH A 58 358 34 HOH HOH . G 5 HOH A 59 359 58 HOH HOH . G 5 HOH A 60 360 18 HOH HOH . G 5 HOH A 61 361 45 HOH HOH . G 5 HOH A 62 362 4 HOH HOH . G 5 HOH A 63 363 37 HOH HOH . G 5 HOH A 64 364 22 HOH HOH . G 5 HOH A 65 365 101 HOH HOH . G 5 HOH A 66 366 75 HOH HOH . G 5 HOH A 67 367 16 HOH HOH . G 5 HOH A 68 368 39 HOH HOH . G 5 HOH A 69 369 107 HOH HOH . G 5 HOH A 70 370 151 HOH HOH . G 5 HOH A 71 371 52 HOH HOH . G 5 HOH A 72 372 42 HOH HOH . G 5 HOH A 73 373 98 HOH HOH . G 5 HOH A 74 374 135 HOH HOH . G 5 HOH A 75 375 138 HOH HOH . G 5 HOH A 76 376 7 HOH HOH . G 5 HOH A 77 377 55 HOH HOH . G 5 HOH A 78 378 113 HOH HOH . G 5 HOH A 79 379 71 HOH HOH . G 5 HOH A 80 380 24 HOH HOH . G 5 HOH A 81 381 87 HOH HOH . G 5 HOH A 82 382 17 HOH HOH . G 5 HOH A 83 383 64 HOH HOH . G 5 HOH A 84 384 47 HOH HOH . G 5 HOH A 85 385 1 HOH HOH . G 5 HOH A 86 386 129 HOH HOH . G 5 HOH A 87 387 32 HOH HOH . G 5 HOH A 88 388 40 HOH HOH . G 5 HOH A 89 389 72 HOH HOH . G 5 HOH A 90 390 27 HOH HOH . G 5 HOH A 91 391 69 HOH HOH . G 5 HOH A 92 392 23 HOH HOH . G 5 HOH A 93 393 70 HOH HOH . G 5 HOH A 94 394 154 HOH HOH . G 5 HOH A 95 395 153 HOH HOH . G 5 HOH A 96 396 116 HOH HOH . G 5 HOH A 97 397 50 HOH HOH . G 5 HOH A 98 398 13 HOH HOH . G 5 HOH A 99 399 157 HOH HOH . G 5 HOH A 100 400 92 HOH HOH . G 5 HOH A 101 401 114 HOH HOH . G 5 HOH A 102 402 125 HOH HOH . G 5 HOH A 103 403 127 HOH HOH . G 5 HOH A 104 404 126 HOH HOH . G 5 HOH A 105 405 160 HOH HOH . G 5 HOH A 106 406 91 HOH HOH . G 5 HOH A 107 407 143 HOH HOH . G 5 HOH A 108 408 122 HOH HOH . G 5 HOH A 109 409 63 HOH HOH . G 5 HOH A 110 410 96 HOH HOH . G 5 HOH A 111 411 11 HOH HOH . G 5 HOH A 112 412 124 HOH HOH . G 5 HOH A 113 413 112 HOH HOH . G 5 HOH A 114 414 132 HOH HOH . G 5 HOH A 115 415 104 HOH HOH . G 5 HOH A 116 416 110 HOH HOH . G 5 HOH A 117 417 46 HOH HOH . G 5 HOH A 118 418 74 HOH HOH . G 5 HOH A 119 419 86 HOH HOH . G 5 HOH A 120 420 102 HOH HOH . G 5 HOH A 121 421 106 HOH HOH . G 5 HOH A 122 422 31 HOH HOH . G 5 HOH A 123 423 158 HOH HOH . G 5 HOH A 124 424 100 HOH HOH . G 5 HOH A 125 425 94 HOH HOH . G 5 HOH A 126 426 136 HOH HOH . G 5 HOH A 127 427 60 HOH HOH . G 5 HOH A 128 428 152 HOH HOH . G 5 HOH A 129 429 121 HOH HOH . G 5 HOH A 130 430 43 HOH HOH . G 5 HOH A 131 431 62 HOH HOH . G 5 HOH A 132 432 108 HOH HOH . G 5 HOH A 133 433 3 HOH HOH . G 5 HOH A 134 434 133 HOH HOH . G 5 HOH A 135 435 79 HOH HOH . G 5 HOH A 136 436 84 HOH HOH . G 5 HOH A 137 437 111 HOH HOH . G 5 HOH A 138 438 68 HOH HOH . G 5 HOH A 139 439 156 HOH HOH . G 5 HOH A 140 440 82 HOH HOH . G 5 HOH A 141 441 130 HOH HOH . G 5 HOH A 142 442 81 HOH HOH . G 5 HOH A 143 443 141 HOH HOH . G 5 HOH A 144 444 115 HOH HOH . G 5 HOH A 145 445 90 HOH HOH . G 5 HOH A 146 446 61 HOH HOH . G 5 HOH A 147 447 117 HOH HOH . G 5 HOH A 148 448 145 HOH HOH . G 5 HOH A 149 449 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1EE6 . . . C 3 37.004 -17.266 25.545 0.75 40.18 ? N1 A1EE6 202 A 1 HETATM 2 C C4 A1EE6 . . . C 3 36.713 -16.225 26.319 0.75 41.81 ? C4 A1EE6 202 A 1 HETATM 3 C C5 A1EE6 . . . C 3 38.376 -17.7 25.32 0.75 35.07 ? C5 A1EE6 202 A 1 HETATM 4 C C6 A1EE6 . . . C 3 38.856 -17.364 23.933 0.75 38.72 ? C6 A1EE6 202 A 1 HETATM 5 C C7 A1EE6 . . . C 3 38.185 -16.424 23.171 0.75 37.77 ? C7 A1EE6 202 A 1 HETATM 6 C C8 A1EE6 . . . C 3 38.616 -16.1 21.895 0.75 43.34 ? C8 A1EE6 202 A 1 HETATM 7 C C10 A1EE6 . . . C 3 40.418 -17.665 22.124 0.75 42.13 ? C10 A1EE6 202 A 1 HETATM 8 C C1 A1EE6 . . . C 3 33.757 -14.37 27.849 0.75 45.05 ? C1 A1EE6 202 A 1 HETATM 9 C C11 A1EE6 . . . C 3 39.975 -17.976 23.398 0.75 38.48 ? C11 A1EE6 202 A 1 HETATM 10 C C2 A1EE6 . . . C 3 35.044 -14.519 27.076 0.75 40.55 ? C2 A1EE6 202 A 1 HETATM 11 C C3 A1EE6 . . . C 3 35.246 -15.892 26.482 0.75 38.1 ? C3 A1EE6 202 A 1 HETATM 12 C C9 A1EE6 . . . C 3 39.721 -16.734 21.411 0.75 43.33 ? C9 A1EE6 202 A 1 HETATM 13 F F1 A1EE6 . . . C 3 40.148 -16.426 20.157 0.75 44.86 ? F1 A1EE6 202 A 1 HETATM 14 O O1 A1EE6 . . . C 3 32.612 -14.579 27.048 0.75 42.79 ? O1 A1EE6 202 A 1 HETATM 15 O O2 A1EE6 . . . C 3 37.583 -15.55 26.865 0.75 35.55 ? O2 A1EE6 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 413 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #