data_9KFC # _model_server_result.job_id uZAAl4C36G9ZKxmmZz-GfA _model_server_result.datetime_utc '2025-08-28 09:01:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9kfc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 9KFC # _exptl.entry_id 9KFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.284 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-(4-methylpiperazin-1-yl)phenyl]methanol' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9KFC _cell.length_a 68.72 _cell.length_b 68.72 _cell.length_c 78.84 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # _chem_comp.formula 'C12 H18 N2 O' _chem_comp.formula_weight 206.284 _chem_comp.id A1AYA _chem_comp.mon_nstd_flag . _chem_comp.name '[2-(4-methylpiperazin-1-yl)phenyl]methanol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 A1AYA sing 1 n n N1 C2 A1AYA sing 2 n n N1 C5 A1AYA sing 3 n n C2 C3 A1AYA sing 4 n n C3 N2 A1AYA sing 5 n n N2 C4 A1AYA sing 6 n n N2 C6 A1AYA sing 7 n n C4 C5 A1AYA sing 8 n n C6 C7 A1AYA doub 9 n y C6 C11 A1AYA sing 10 n y C7 C8 A1AYA sing 11 n y C8 C9 A1AYA doub 12 n y C9 C10 A1AYA sing 13 n y C10 C11 A1AYA doub 14 n y C11 C12 A1AYA sing 15 n n C12 O1 A1AYA sing 16 n n C10 HC11 A1AYA sing 17 n n C12 HC12 A1AYA sing 18 n n C12 HC13 A1AYA sing 19 n n C1 HC15 A1AYA sing 20 n n C1 HC16 A1AYA sing 21 n n C1 HC14 A1AYA sing 22 n n C2 HC3 A1AYA sing 23 n n C2 HC2 A1AYA sing 24 n n C3 HC5 A1AYA sing 25 n n C3 HC4 A1AYA sing 26 n n C4 HC7 A1AYA sing 27 n n C4 HC6 A1AYA sing 28 n n C5 HC8 A1AYA sing 29 n n C5 HC9 A1AYA sing 30 n n C7 HC A1AYA sing 31 n n C8 HC1 A1AYA sing 32 n n C9 HC10 A1AYA sing 33 n n O1 HO A1AYA sing 34 n n # _atom_sites.entry_id 9KFC _atom_sites.fract_transf_matrix[1][1] 0.014552 _atom_sites.fract_transf_matrix[1][2] 0.008401 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AYA A 1 301 301 A1AYA LIG . C 3 PE8 A 1 302 303 PE8 PE8 . D 2 A1AYA A 1 303 304 A1AYA LIG . E 4 SO4 A 1 304 1 SO4 SO4 . F 4 SO4 A 1 305 2 SO4 SO4 . G 4 SO4 A 1 306 3 SO4 SO4 . H 5 HOH A 1 401 99 HOH HOH . H 5 HOH A 2 402 151 HOH HOH . H 5 HOH A 3 403 148 HOH HOH . H 5 HOH A 4 404 95 HOH HOH . H 5 HOH A 5 405 165 HOH HOH . H 5 HOH A 6 406 18 HOH HOH . H 5 HOH A 7 407 136 HOH HOH . H 5 HOH A 8 408 101 HOH HOH . H 5 HOH A 9 409 146 HOH HOH . H 5 HOH A 10 410 135 HOH HOH . H 5 HOH A 11 411 56 HOH HOH . H 5 HOH A 12 412 85 HOH HOH . H 5 HOH A 13 413 60 HOH HOH . H 5 HOH A 14 414 62 HOH HOH . H 5 HOH A 15 415 31 HOH HOH . H 5 HOH A 16 416 113 HOH HOH . H 5 HOH A 17 417 116 HOH HOH . H 5 HOH A 18 418 24 HOH HOH . H 5 HOH A 19 419 84 HOH HOH . H 5 HOH A 20 420 2 HOH HOH . H 5 HOH A 21 421 20 HOH HOH . H 5 HOH A 22 422 38 HOH HOH . H 5 HOH A 23 423 64 HOH HOH . H 5 HOH A 24 424 140 HOH HOH . H 5 HOH A 25 425 40 HOH HOH . H 5 HOH A 26 426 1 HOH HOH . H 5 HOH A 27 427 70 HOH HOH . H 5 HOH A 28 428 16 HOH HOH . H 5 HOH A 29 429 34 HOH HOH . H 5 HOH A 30 430 72 HOH HOH . H 5 HOH A 31 431 15 HOH HOH . H 5 HOH A 32 432 104 HOH HOH . H 5 HOH A 33 433 23 HOH HOH . H 5 HOH A 34 434 35 HOH HOH . H 5 HOH A 35 435 28 HOH HOH . H 5 HOH A 36 436 3 HOH HOH . H 5 HOH A 37 437 5 HOH HOH . H 5 HOH A 38 438 96 HOH HOH . H 5 HOH A 39 439 36 HOH HOH . H 5 HOH A 40 440 110 HOH HOH . H 5 HOH A 41 441 4 HOH HOH . H 5 HOH A 42 442 65 HOH HOH . H 5 HOH A 43 443 76 HOH HOH . H 5 HOH A 44 444 54 HOH HOH . H 5 HOH A 45 445 119 HOH HOH . H 5 HOH A 46 446 150 HOH HOH . H 5 HOH A 47 447 14 HOH HOH . H 5 HOH A 48 448 39 HOH HOH . H 5 HOH A 49 449 30 HOH HOH . H 5 HOH A 50 450 51 HOH HOH . H 5 HOH A 51 451 155 HOH HOH . H 5 HOH A 52 452 48 HOH HOH . H 5 HOH A 53 453 44 HOH HOH . H 5 HOH A 54 454 32 HOH HOH . H 5 HOH A 55 455 131 HOH HOH . H 5 HOH A 56 456 78 HOH HOH . H 5 HOH A 57 457 6 HOH HOH . H 5 HOH A 58 458 57 HOH HOH . H 5 HOH A 59 459 69 HOH HOH . H 5 HOH A 60 460 133 HOH HOH . H 5 HOH A 61 461 19 HOH HOH . H 5 HOH A 62 462 13 HOH HOH . H 5 HOH A 63 463 21 HOH HOH . H 5 HOH A 64 464 25 HOH HOH . H 5 HOH A 65 465 139 HOH HOH . H 5 HOH A 66 466 156 HOH HOH . H 5 HOH A 67 467 27 HOH HOH . H 5 HOH A 68 468 112 HOH HOH . H 5 HOH A 69 469 55 HOH HOH . H 5 HOH A 70 470 9 HOH HOH . H 5 HOH A 71 471 88 HOH HOH . H 5 HOH A 72 472 58 HOH HOH . H 5 HOH A 73 473 126 HOH HOH . H 5 HOH A 74 474 7 HOH HOH . H 5 HOH A 75 475 17 HOH HOH . H 5 HOH A 76 476 130 HOH HOH . H 5 HOH A 77 477 8 HOH HOH . H 5 HOH A 78 478 52 HOH HOH . H 5 HOH A 79 479 43 HOH HOH . H 5 HOH A 80 480 82 HOH HOH . H 5 HOH A 81 481 115 HOH HOH . H 5 HOH A 82 482 41 HOH HOH . H 5 HOH A 83 483 114 HOH HOH . H 5 HOH A 84 484 90 HOH HOH . H 5 HOH A 85 485 37 HOH HOH . H 5 HOH A 86 486 80 HOH HOH . H 5 HOH A 87 487 10 HOH HOH . H 5 HOH A 88 488 118 HOH HOH . H 5 HOH A 89 489 11 HOH HOH . H 5 HOH A 90 490 89 HOH HOH . H 5 HOH A 91 491 92 HOH HOH . H 5 HOH A 92 492 117 HOH HOH . H 5 HOH A 93 493 149 HOH HOH . H 5 HOH A 94 494 63 HOH HOH . H 5 HOH A 95 495 153 HOH HOH . H 5 HOH A 96 496 71 HOH HOH . H 5 HOH A 97 497 42 HOH HOH . H 5 HOH A 98 498 103 HOH HOH . H 5 HOH A 99 499 163 HOH HOH . H 5 HOH A 100 500 134 HOH HOH . H 5 HOH A 101 501 122 HOH HOH . H 5 HOH A 102 502 100 HOH HOH . H 5 HOH A 103 503 67 HOH HOH . H 5 HOH A 104 504 161 HOH HOH . H 5 HOH A 105 505 53 HOH HOH . H 5 HOH A 106 506 144 HOH HOH . H 5 HOH A 107 507 26 HOH HOH . H 5 HOH A 108 508 59 HOH HOH . H 5 HOH A 109 509 129 HOH HOH . H 5 HOH A 110 510 124 HOH HOH . H 5 HOH A 111 511 46 HOH HOH . H 5 HOH A 112 512 91 HOH HOH . H 5 HOH A 113 513 75 HOH HOH . H 5 HOH A 114 514 106 HOH HOH . H 5 HOH A 115 515 102 HOH HOH . H 5 HOH A 116 516 111 HOH HOH . H 5 HOH A 117 517 108 HOH HOH . H 5 HOH A 118 518 142 HOH HOH . H 5 HOH A 119 519 109 HOH HOH . H 5 HOH A 120 520 166 HOH HOH . H 5 HOH A 121 521 77 HOH HOH . H 5 HOH A 122 522 147 HOH HOH . H 5 HOH A 123 523 143 HOH HOH . H 5 HOH A 124 524 107 HOH HOH . H 5 HOH A 125 525 83 HOH HOH . H 5 HOH A 126 526 29 HOH HOH . H 5 HOH A 127 527 137 HOH HOH . H 5 HOH A 128 528 128 HOH HOH . H 5 HOH A 129 529 154 HOH HOH . H 5 HOH A 130 530 105 HOH HOH . H 5 HOH A 131 531 94 HOH HOH . H 5 HOH A 132 532 81 HOH HOH . H 5 HOH A 133 533 86 HOH HOH . H 5 HOH A 134 534 125 HOH HOH . H 5 HOH A 135 535 141 HOH HOH . H 5 HOH A 136 536 87 HOH HOH . H 5 HOH A 137 537 68 HOH HOH . H 5 HOH A 138 538 12 HOH HOH . H 5 HOH A 139 539 79 HOH HOH . H 5 HOH A 140 540 45 HOH HOH . H 5 HOH A 141 541 22 HOH HOH . H 5 HOH A 142 542 33 HOH HOH . H 5 HOH A 143 543 159 HOH HOH . H 5 HOH A 144 544 167 HOH HOH . H 5 HOH A 145 545 145 HOH HOH . H 5 HOH A 146 546 66 HOH HOH . H 5 HOH A 147 547 73 HOH HOH . H 5 HOH A 148 548 98 HOH HOH . H 5 HOH A 149 549 123 HOH HOH . H 5 HOH A 150 550 120 HOH HOH . H 5 HOH A 151 551 121 HOH HOH . H 5 HOH A 152 552 157 HOH HOH . H 5 HOH A 153 553 61 HOH HOH . H 5 HOH A 154 554 132 HOH HOH . H 5 HOH A 155 555 127 HOH HOH . H 5 HOH A 156 556 97 HOH HOH . H 5 HOH A 157 557 162 HOH HOH . H 5 HOH A 158 558 74 HOH HOH . H 5 HOH A 159 559 49 HOH HOH . H 5 HOH A 160 560 138 HOH HOH . H 5 HOH A 161 561 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1AYA . . . D 2 -41.216 13.128 24.378 0.76 46.41 ? C10 A1AYA 303 A 1 HETATM 2 C C12 A1AYA . . . D 2 -43.233 12.638 22.961 0.76 49.74 ? C12 A1AYA 303 A 1 HETATM 3 C C1 A1AYA . . . D 2 -47.828 15.552 24.161 0.76 56.36 ? C1 A1AYA 303 A 1 HETATM 4 C C11 A1AYA . . . D 2 -42.492 13.498 23.956 0.76 48.53 ? C11 A1AYA 303 A 1 HETATM 5 C C2 A1AYA . . . D 2 -46.092 15.764 22.503 0.76 53.05 ? C2 A1AYA 303 A 1 HETATM 6 C C3 A1AYA . . . D 2 -44.608 15.71 22.793 0.76 53.58 ? C3 A1AYA 303 A 1 HETATM 7 C C4 A1AYA . . . D 2 -45.101 15.797 25.155 0.76 50.68 ? C4 A1AYA 303 A 1 HETATM 8 C C5 A1AYA . . . D 2 -45.914 16.939 24.589 0.76 55.31 ? C5 A1AYA 303 A 1 HETATM 9 C C6 A1AYA . . . D 2 -43.053 14.679 24.482 0.76 47.54 ? C6 A1AYA 303 A 1 HETATM 10 C C7 A1AYA . . . D 2 -42.341 15.429 25.418 0.76 42.22 ? C7 A1AYA 303 A 1 HETATM 11 C C8 A1AYA . . . D 2 -41.069 15.037 25.806 0.76 38.05 ? C8 A1AYA 303 A 1 HETATM 12 C C9 A1AYA . . . D 2 -40.512 13.889 25.289 0.76 41.62 ? C9 A1AYA 303 A 1 HETATM 13 N N1 A1AYA . . . D 2 -46.836 16.447 23.566 0.76 57.63 ? N1 A1AYA 303 A 1 HETATM 14 N N2 A1AYA . . . D 2 -44.374 15.088 24.099 0.76 52.51 ? N2 A1AYA 303 A 1 HETATM 15 O O1 A1AYA . . . D 2 -42.347 11.911 22.118 0.76 57.07 ? O1 A1AYA 303 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 146 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #