data_9KGS # _model_server_result.job_id UUU3HizaXpqPJTS4q8nGIQ _model_server_result.datetime_utc '2025-08-21 04:28:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9kgs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 9KGS # _exptl.entry_id 9KGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 101.104 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'cyclopropylcarbamic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.48 _cell.angle_gamma 90 _cell.entry_id 9KGS _cell.length_a 55.612 _cell.length_b 99.076 _cell.length_c 59.399 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 150 B CYS 145 1_555 D C A1L7K 4 D A1L7K 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale2 C C PIV 1 C PIV 1 1_555 C N A1EAK 2 C A1EAK 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale3 C C A1EAK 2 C A1EAK 2 1_555 C N A1L7N 3 C A1L7N 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale4 C C A1L7N 3 C A1L7N 3 1_555 C N A1L7K 4 C A1L7K 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale5 C C A1L7K 4 C A1L7K 4 1_555 E C5 A1L7M . C A1L7M 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.55 ? covale ? covale6 D C PIV 1 D PIV 1 1_555 D N A1EAK 2 D A1EAK 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale7 D C A1EAK 2 D A1EAK 2 1_555 D N A1L7N 3 D A1L7N 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? covale ? covale8 D C A1L7N 3 D A1L7N 3 1_555 D N A1L7K 4 D A1L7K 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.484 ? covale ? covale9 D C A1L7K 4 D A1L7K 4 1_555 F C5 A1L7M . D A1L7M 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? # _chem_comp.formula 'C4 H7 N O2' _chem_comp.formula_weight 101.104 _chem_comp.id A1L7M _chem_comp.mon_nstd_flag . _chem_comp.name 'cyclopropylcarbamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C5 A1L7M doub 51 n n C5 N A1L7M sing 52 n n N C2 A1L7M sing 53 n n C2 C1 A1L7M sing 54 n n C2 C A1L7M sing 55 n n C1 C A1L7M sing 56 n n C1 H1 A1L7M sing 57 n n C1 H2 A1L7M sing 58 n n C2 H4 A1L7M sing 59 n n N H5 A1L7M sing 60 n n C H6 A1L7M sing 61 n n C H7 A1L7M sing 62 n n C5 O1 A1L7M sing 63 n n O1 H3 A1L7M sing 64 n n # _atom_sites.entry_id 9KGS _atom_sites.fract_transf_matrix[1][1] 0.017982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00601 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 A1L7M C 1 101 1 A1L7M 216 . F 3 A1L7M D 1 101 2 A1L7M 216 . G 4 HOH B 1 401 116 HOH HOH . G 4 HOH B 2 402 209 HOH HOH . G 4 HOH B 3 403 198 HOH HOH . G 4 HOH B 4 404 164 HOH HOH . G 4 HOH B 5 405 85 HOH HOH . G 4 HOH B 6 406 18 HOH HOH . G 4 HOH B 7 407 57 HOH HOH . G 4 HOH B 8 408 201 HOH HOH . G 4 HOH B 9 409 127 HOH HOH . G 4 HOH B 10 410 95 HOH HOH . G 4 HOH B 11 411 162 HOH HOH . G 4 HOH B 12 412 112 HOH HOH . G 4 HOH B 13 413 169 HOH HOH . G 4 HOH B 14 414 218 HOH HOH . G 4 HOH B 15 415 193 HOH HOH . G 4 HOH B 16 416 213 HOH HOH . G 4 HOH B 17 417 145 HOH HOH . G 4 HOH B 18 418 20 HOH HOH . G 4 HOH B 19 419 142 HOH HOH . G 4 HOH B 20 420 66 HOH HOH . G 4 HOH B 21 421 147 HOH HOH . G 4 HOH B 22 422 26 HOH HOH . G 4 HOH B 23 423 175 HOH HOH . G 4 HOH B 24 424 205 HOH HOH . G 4 HOH B 25 425 222 HOH HOH . G 4 HOH B 26 426 43 HOH HOH . G 4 HOH B 27 427 60 HOH HOH . G 4 HOH B 28 428 40 HOH HOH . G 4 HOH B 29 429 6 HOH HOH . G 4 HOH B 30 430 118 HOH HOH . G 4 HOH B 31 431 174 HOH HOH . G 4 HOH B 32 432 128 HOH HOH . G 4 HOH B 33 433 86 HOH HOH . G 4 HOH B 34 434 14 HOH HOH . G 4 HOH B 35 435 33 HOH HOH . G 4 HOH B 36 436 45 HOH HOH . G 4 HOH B 37 437 64 HOH HOH . G 4 HOH B 38 438 44 HOH HOH . G 4 HOH B 39 439 107 HOH HOH . G 4 HOH B 40 440 4 HOH HOH . G 4 HOH B 41 441 51 HOH HOH . G 4 HOH B 42 442 104 HOH HOH . G 4 HOH B 43 443 212 HOH HOH . G 4 HOH B 44 444 123 HOH HOH . G 4 HOH B 45 445 50 HOH HOH . G 4 HOH B 46 446 5 HOH HOH . G 4 HOH B 47 447 108 HOH HOH . G 4 HOH B 48 448 39 HOH HOH . G 4 HOH B 49 449 111 HOH HOH . G 4 HOH B 50 450 220 HOH HOH . G 4 HOH B 51 451 119 HOH HOH . G 4 HOH B 52 452 31 HOH HOH . G 4 HOH B 53 453 113 HOH HOH . G 4 HOH B 54 454 9 HOH HOH . G 4 HOH B 55 455 96 HOH HOH . G 4 HOH B 56 456 237 HOH HOH . G 4 HOH B 57 457 90 HOH HOH . G 4 HOH B 58 458 3 HOH HOH . G 4 HOH B 59 459 80 HOH HOH . G 4 HOH B 60 460 203 HOH HOH . G 4 HOH B 61 461 207 HOH HOH . G 4 HOH B 62 462 153 HOH HOH . G 4 HOH B 63 463 200 HOH HOH . G 4 HOH B 64 464 19 HOH HOH . G 4 HOH B 65 465 72 HOH HOH . G 4 HOH B 66 466 82 HOH HOH . G 4 HOH B 67 467 24 HOH HOH . G 4 HOH B 68 468 1 HOH HOH . G 4 HOH B 69 469 11 HOH HOH . G 4 HOH B 70 470 151 HOH HOH . G 4 HOH B 71 471 140 HOH HOH . G 4 HOH B 72 472 121 HOH HOH . G 4 HOH B 73 473 192 HOH HOH . G 4 HOH B 74 474 77 HOH HOH . G 4 HOH B 75 475 130 HOH HOH . G 4 HOH B 76 476 139 HOH HOH . G 4 HOH B 77 477 211 HOH HOH . G 4 HOH B 78 478 15 HOH HOH . G 4 HOH B 79 479 204 HOH HOH . G 4 HOH B 80 480 59 HOH HOH . G 4 HOH B 81 481 52 HOH HOH . G 4 HOH B 82 482 171 HOH HOH . G 4 HOH B 83 483 92 HOH HOH . G 4 HOH B 84 484 152 HOH HOH . G 4 HOH B 85 485 42 HOH HOH . G 4 HOH B 86 486 109 HOH HOH . G 4 HOH B 87 487 8 HOH HOH . G 4 HOH B 88 488 231 HOH HOH . G 4 HOH B 89 489 61 HOH HOH . G 4 HOH B 90 490 110 HOH HOH . G 4 HOH B 91 491 98 HOH HOH . G 4 HOH B 92 492 135 HOH HOH . G 4 HOH B 93 493 173 HOH HOH . G 4 HOH B 94 494 122 HOH HOH . G 4 HOH B 95 495 78 HOH HOH . G 4 HOH B 96 496 143 HOH HOH . G 4 HOH B 97 497 37 HOH HOH . G 4 HOH B 98 498 219 HOH HOH . G 4 HOH B 99 499 183 HOH HOH . G 4 HOH B 100 500 99 HOH HOH . G 4 HOH B 101 501 215 HOH HOH . G 4 HOH B 102 502 120 HOH HOH . G 4 HOH B 103 503 234 HOH HOH . G 4 HOH B 104 504 229 HOH HOH . G 4 HOH B 105 505 48 HOH HOH . G 4 HOH B 106 506 206 HOH HOH . G 4 HOH B 107 507 76 HOH HOH . G 4 HOH B 108 508 132 HOH HOH . G 4 HOH B 109 509 168 HOH HOH . G 4 HOH B 110 510 105 HOH HOH . G 4 HOH B 111 511 158 HOH HOH . G 4 HOH B 112 512 230 HOH HOH . G 4 HOH B 113 513 46 HOH HOH . G 4 HOH B 114 514 136 HOH HOH . G 4 HOH B 115 515 228 HOH HOH . G 4 HOH B 116 516 172 HOH HOH . G 4 HOH B 117 517 106 HOH HOH . G 4 HOH B 118 518 197 HOH HOH . G 4 HOH B 119 519 181 HOH HOH . G 4 HOH B 120 520 194 HOH HOH . G 4 HOH B 121 521 176 HOH HOH . G 4 HOH B 122 522 208 HOH HOH . G 4 HOH B 123 523 156 HOH HOH . G 4 HOH B 124 524 160 HOH HOH . G 4 HOH B 125 525 68 HOH HOH . G 4 HOH B 126 526 114 HOH HOH . G 4 HOH B 127 527 165 HOH HOH . G 4 HOH B 128 528 177 HOH HOH . G 4 HOH B 129 529 243 HOH HOH . G 4 HOH B 130 530 240 HOH HOH . G 4 HOH B 131 531 53 HOH HOH . G 4 HOH B 132 532 163 HOH HOH . G 4 HOH B 133 533 182 HOH HOH . G 4 HOH B 134 534 150 HOH HOH . G 4 HOH B 135 535 241 HOH HOH . G 4 HOH B 136 536 159 HOH HOH . G 4 HOH B 137 537 184 HOH HOH . G 4 HOH B 138 538 155 HOH HOH . H 4 HOH A 1 401 65 HOH HOH . H 4 HOH A 2 402 87 HOH HOH . H 4 HOH A 3 403 83 HOH HOH . H 4 HOH A 4 404 161 HOH HOH . H 4 HOH A 5 405 239 HOH HOH . H 4 HOH A 6 406 187 HOH HOH . H 4 HOH A 7 407 25 HOH HOH . H 4 HOH A 8 408 54 HOH HOH . H 4 HOH A 9 409 224 HOH HOH . H 4 HOH A 10 410 34 HOH HOH . H 4 HOH A 11 411 89 HOH HOH . H 4 HOH A 12 412 70 HOH HOH . H 4 HOH A 13 413 2 HOH HOH . H 4 HOH A 14 414 242 HOH HOH . H 4 HOH A 15 415 93 HOH HOH . H 4 HOH A 16 416 13 HOH HOH . H 4 HOH A 17 417 157 HOH HOH . H 4 HOH A 18 418 144 HOH HOH . H 4 HOH A 19 419 27 HOH HOH . H 4 HOH A 20 420 62 HOH HOH . H 4 HOH A 21 421 100 HOH HOH . H 4 HOH A 22 422 97 HOH HOH . H 4 HOH A 23 423 133 HOH HOH . H 4 HOH A 24 424 166 HOH HOH . H 4 HOH A 25 425 28 HOH HOH . H 4 HOH A 26 426 103 HOH HOH . H 4 HOH A 27 427 12 HOH HOH . H 4 HOH A 28 428 58 HOH HOH . H 4 HOH A 29 429 16 HOH HOH . H 4 HOH A 30 430 17 HOH HOH . H 4 HOH A 31 431 56 HOH HOH . H 4 HOH A 32 432 189 HOH HOH . H 4 HOH A 33 433 141 HOH HOH . H 4 HOH A 34 434 190 HOH HOH . H 4 HOH A 35 435 81 HOH HOH . H 4 HOH A 36 436 146 HOH HOH . H 4 HOH A 37 437 191 HOH HOH . H 4 HOH A 38 438 47 HOH HOH . H 4 HOH A 39 439 126 HOH HOH . H 4 HOH A 40 440 36 HOH HOH . H 4 HOH A 41 441 30 HOH HOH . H 4 HOH A 42 442 63 HOH HOH . H 4 HOH A 43 443 196 HOH HOH . H 4 HOH A 44 444 21 HOH HOH . H 4 HOH A 45 445 179 HOH HOH . H 4 HOH A 46 446 101 HOH HOH . H 4 HOH A 47 447 84 HOH HOH . H 4 HOH A 48 448 94 HOH HOH . H 4 HOH A 49 449 216 HOH HOH . H 4 HOH A 50 450 23 HOH HOH . H 4 HOH A 51 451 134 HOH HOH . H 4 HOH A 52 452 236 HOH HOH . H 4 HOH A 53 453 22 HOH HOH . H 4 HOH A 54 454 49 HOH HOH . H 4 HOH A 55 455 69 HOH HOH . H 4 HOH A 56 456 32 HOH HOH . H 4 HOH A 57 457 79 HOH HOH . H 4 HOH A 58 458 131 HOH HOH . H 4 HOH A 59 459 149 HOH HOH . H 4 HOH A 60 460 7 HOH HOH . H 4 HOH A 61 461 102 HOH HOH . H 4 HOH A 62 462 195 HOH HOH . H 4 HOH A 63 463 238 HOH HOH . H 4 HOH A 64 464 55 HOH HOH . H 4 HOH A 65 465 35 HOH HOH . H 4 HOH A 66 466 91 HOH HOH . H 4 HOH A 67 467 88 HOH HOH . H 4 HOH A 68 468 10 HOH HOH . H 4 HOH A 69 469 138 HOH HOH . H 4 HOH A 70 470 115 HOH HOH . H 4 HOH A 71 471 71 HOH HOH . H 4 HOH A 72 472 41 HOH HOH . H 4 HOH A 73 473 117 HOH HOH . H 4 HOH A 74 474 38 HOH HOH . H 4 HOH A 75 475 233 HOH HOH . H 4 HOH A 76 476 124 HOH HOH . H 4 HOH A 77 477 221 HOH HOH . H 4 HOH A 78 478 125 HOH HOH . H 4 HOH A 79 479 227 HOH HOH . H 4 HOH A 80 480 154 HOH HOH . H 4 HOH A 81 481 75 HOH HOH . H 4 HOH A 82 482 202 HOH HOH . H 4 HOH A 83 483 235 HOH HOH . H 4 HOH A 84 484 67 HOH HOH . H 4 HOH A 85 485 29 HOH HOH . H 4 HOH A 86 486 170 HOH HOH . H 4 HOH A 87 487 210 HOH HOH . H 4 HOH A 88 488 73 HOH HOH . H 4 HOH A 89 489 74 HOH HOH . H 4 HOH A 90 490 129 HOH HOH . H 4 HOH A 91 491 217 HOH HOH . H 4 HOH A 92 492 188 HOH HOH . H 4 HOH A 93 493 225 HOH HOH . H 4 HOH A 94 494 178 HOH HOH . H 4 HOH A 95 495 186 HOH HOH . H 4 HOH A 96 496 185 HOH HOH . H 4 HOH A 97 497 226 HOH HOH . H 4 HOH A 98 498 199 HOH HOH . H 4 HOH A 99 499 148 HOH HOH . H 4 HOH A 100 500 137 HOH HOH . H 4 HOH A 101 501 214 HOH HOH . H 4 HOH A 102 502 232 HOH HOH . I 4 HOH C 1 201 223 HOH HOH . J 4 HOH D 1 201 180 HOH HOH . J 4 HOH D 2 202 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1L7M . . . E 3 6.251 15.933 33.527 1 32.1 ? C1 A1L7M 101 C 1 HETATM 2 C C5 A1L7M . . . E 3 7.961 15.763 30.332 1 31.75 ? C5 A1L7M 101 C 1 HETATM 3 C C2 A1L7M . . . E 3 7.27 15.078 32.771 1 34.11 ? C2 A1L7M 101 C 1 HETATM 4 O O A1L7M . . . E 3 7.226 15.026 29.752 1 25.72 ? O A1L7M 101 C 1 HETATM 5 N N A1L7M . . . E 3 8.064 15.837 31.801 1 31.17 ? N A1L7M 101 C 1 HETATM 6 C C A1L7M . . . E 3 7.553 15.513 34.211 1 34.29 ? C A1L7M 101 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #