data_9KHZ # _model_server_result.job_id sl-eXyYj1UzLmmmtPJ8xPg _model_server_result.datetime_utc '2025-07-13 21:22:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9khz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1301}' # _entry.id 9KHZ # _exptl.entry_id 9KHZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9KHZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 9KHZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ADP A 1 1301 1301 ADP ADP . F 4 ADP B 1 1301 1301 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 4 121.721 102.254 173.481 1 119.76 ? PB ADP 1301 A 1 HETATM 2 O O1B ADP . . . E 4 120.891 103.415 173.011 1 113.54 ? O1B ADP 1301 A 1 HETATM 3 O O2B ADP . . . E 4 121.86 101.147 172.483 1 114.42 ? O2B ADP 1301 A 1 HETATM 4 O O3B ADP . . . E 4 122.973 102.697 174.188 1 112.78 ? O3B ADP 1301 A 1 HETATM 5 P PA ADP . . . E 4 121.507 100.469 175.611 1 113.87 ? PA ADP 1301 A 1 HETATM 6 O O1A ADP . . . E 4 121.966 101.18 176.857 1 112.43 ? O1A ADP 1301 A 1 HETATM 7 O O2A ADP . . . E 4 120.498 99.348 175.705 1 109.64 ? O2A ADP 1301 A 1 HETATM 8 O O3A ADP . . . E 4 120.859 101.567 174.635 1 116.59 ? O3A ADP 1301 A 1 HETATM 9 O O5' ADP . . . E 4 122.826 99.952 174.86 1 111.07 ? O5' ADP 1301 A 1 HETATM 10 C C5' ADP . . . E 4 123.861 99.334 175.605 1 111.75 ? C5' ADP 1301 A 1 HETATM 11 C C4' ADP . . . E 4 123.246 98.036 176.078 1 112.64 ? C4' ADP 1301 A 1 HETATM 12 O O4' ADP . . . E 4 123.952 96.912 175.572 1 112.72 ? O4' ADP 1301 A 1 HETATM 13 C C3' ADP . . . E 4 123.266 97.903 177.584 1 114.15 ? C3' ADP 1301 A 1 HETATM 14 O O3' ADP . . . E 4 122.138 98.547 178.177 1 113.81 ? O3' ADP 1301 A 1 HETATM 15 C C2' ADP . . . E 4 123.236 96.411 177.782 1 115.11 ? C2' ADP 1301 A 1 HETATM 16 O O2' ADP . . . E 4 121.911 95.947 178.033 1 115.08 ? O2' ADP 1301 A 1 HETATM 17 C C1' ADP . . . E 4 123.752 95.842 176.477 1 114.67 ? C1' ADP 1301 A 1 HETATM 18 N N9 ADP . . . E 4 125.04 95.208 176.753 1 115.43 ? N9 ADP 1301 A 1 HETATM 19 C C8 ADP . . . E 4 126.108 95.749 177.363 1 112.47 ? C8 ADP 1301 A 1 HETATM 20 N N7 ADP . . . E 4 127.113 94.844 177.448 1 110.48 ? N7 ADP 1301 A 1 HETATM 21 C C5 ADP . . . E 4 126.67 93.705 176.886 1 113.35 ? C5 ADP 1301 A 1 HETATM 22 C C6 ADP . . . E 4 127.205 92.352 176.632 1 113.8 ? C6 ADP 1301 A 1 HETATM 23 N N6 ADP . . . E 4 128.461 92.008 177.004 1 112.3 ? N6 ADP 1301 A 1 HETATM 24 N N1 ADP . . . E 4 126.4 91.469 176.005 1 113.86 ? N1 ADP 1301 A 1 HETATM 25 C C2 ADP . . . E 4 125.149 91.783 175.631 1 112.99 ? C2 ADP 1301 A 1 HETATM 26 N N3 ADP . . . E 4 124.597 92.988 175.828 1 112.76 ? N3 ADP 1301 A 1 HETATM 27 C C4 ADP . . . E 4 125.301 93.959 176.436 1 114.06 ? C4 ADP 1301 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 27 #