data_9KK4 # _model_server_result.job_id BjB2TjTWnwWbAF_95tnP1g _model_server_result.datetime_utc '2025-06-28 09:41:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9kk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 9KK4 # _exptl.entry_id 9KK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 169.178 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9KK4 _cell.length_a 54.045 _cell.length_b 57.75 _cell.length_c 65.676 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'C8 H11 N O3' _chem_comp.formula_weight 169.178 _chem_comp.id UEG _chem_comp.mon_nstd_flag . _chem_comp.name 4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP4 C5A UEG sing 371 n n C5A C5 UEG sing 372 n n C5 C6 UEG sing 373 n y C5 C4 UEG doub 374 n y C6 N1 UEG doub 375 n y N1 C2 UEG sing 376 n y C2 C3 UEG doub 377 n y C2 C2A UEG sing 378 n n C3 C4 UEG sing 379 n y C3 O3 UEG sing 380 n n C4 C4A UEG sing 381 n n C4A O4A UEG sing 382 n n C4A H4A UEG sing 383 n n C4A H4B UEG sing 384 n n OP4 HP4 UEG sing 385 n n C5A H5A UEG sing 386 n n C5A H5B UEG sing 387 n n C6 H6 UEG sing 388 n n C2A H2A UEG sing 389 n n C2A H2B UEG sing 390 n n C2A H2C UEG sing 391 n n O3 H3 UEG sing 392 n n O4A H5 UEG sing 393 n n # _atom_sites.entry_id 9KK4 _atom_sites.fract_transf_matrix[1][1] 0.018503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 398 GOL GOL . C 2 GOL A 1 302 399 GOL GOL . D 3 CA A 1 303 1 CA CA . E 4 CL A 1 304 1 CL CL . F 4 CL A 1 305 2 CL CL . G 5 UEG A 1 306 299 UEG UEG . H 6 HOH A 1 401 87 HOH HOH . H 6 HOH A 2 402 28 HOH HOH . H 6 HOH A 3 403 141 HOH HOH . H 6 HOH A 4 404 67 HOH HOH . H 6 HOH A 5 405 81 HOH HOH . H 6 HOH A 6 406 94 HOH HOH . H 6 HOH A 7 407 77 HOH HOH . H 6 HOH A 8 408 130 HOH HOH . H 6 HOH A 9 409 120 HOH HOH . H 6 HOH A 10 410 21 HOH HOH . H 6 HOH A 11 411 91 HOH HOH . H 6 HOH A 12 412 86 HOH HOH . H 6 HOH A 13 413 113 HOH HOH . H 6 HOH A 14 414 142 HOH HOH . H 6 HOH A 15 415 118 HOH HOH . H 6 HOH A 16 416 88 HOH HOH . H 6 HOH A 17 417 103 HOH HOH . H 6 HOH A 18 418 111 HOH HOH . H 6 HOH A 19 419 20 HOH HOH . H 6 HOH A 20 420 3 HOH HOH . H 6 HOH A 21 421 23 HOH HOH . H 6 HOH A 22 422 58 HOH HOH . H 6 HOH A 23 423 35 HOH HOH . H 6 HOH A 24 424 4 HOH HOH . H 6 HOH A 25 425 112 HOH HOH . H 6 HOH A 26 426 49 HOH HOH . H 6 HOH A 27 427 34 HOH HOH . H 6 HOH A 28 428 45 HOH HOH . H 6 HOH A 29 429 54 HOH HOH . H 6 HOH A 30 430 19 HOH HOH . H 6 HOH A 31 431 65 HOH HOH . H 6 HOH A 32 432 92 HOH HOH . H 6 HOH A 33 433 17 HOH HOH . H 6 HOH A 34 434 52 HOH HOH . H 6 HOH A 35 435 133 HOH HOH . H 6 HOH A 36 436 60 HOH HOH . H 6 HOH A 37 437 46 HOH HOH . H 6 HOH A 38 438 22 HOH HOH . H 6 HOH A 39 439 104 HOH HOH . H 6 HOH A 40 440 62 HOH HOH . H 6 HOH A 41 441 56 HOH HOH . H 6 HOH A 42 442 39 HOH HOH . H 6 HOH A 43 443 33 HOH HOH . H 6 HOH A 44 444 29 HOH HOH . H 6 HOH A 45 445 71 HOH HOH . H 6 HOH A 46 446 110 HOH HOH . H 6 HOH A 47 447 2 HOH HOH . H 6 HOH A 48 448 96 HOH HOH . H 6 HOH A 49 449 43 HOH HOH . H 6 HOH A 50 450 89 HOH HOH . H 6 HOH A 51 451 15 HOH HOH . H 6 HOH A 52 452 101 HOH HOH . H 6 HOH A 53 453 107 HOH HOH . H 6 HOH A 54 454 128 HOH HOH . H 6 HOH A 55 455 61 HOH HOH . H 6 HOH A 56 456 55 HOH HOH . H 6 HOH A 57 457 25 HOH HOH . H 6 HOH A 58 458 59 HOH HOH . H 6 HOH A 59 459 31 HOH HOH . H 6 HOH A 60 460 83 HOH HOH . H 6 HOH A 61 461 36 HOH HOH . H 6 HOH A 62 462 124 HOH HOH . H 6 HOH A 63 463 108 HOH HOH . H 6 HOH A 64 464 50 HOH HOH . H 6 HOH A 65 465 10 HOH HOH . H 6 HOH A 66 466 5 HOH HOH . H 6 HOH A 67 467 13 HOH HOH . H 6 HOH A 68 468 78 HOH HOH . H 6 HOH A 69 469 139 HOH HOH . H 6 HOH A 70 470 38 HOH HOH . H 6 HOH A 71 471 80 HOH HOH . H 6 HOH A 72 472 18 HOH HOH . H 6 HOH A 73 473 64 HOH HOH . H 6 HOH A 74 474 79 HOH HOH . H 6 HOH A 75 475 98 HOH HOH . H 6 HOH A 76 476 37 HOH HOH . H 6 HOH A 77 477 82 HOH HOH . H 6 HOH A 78 478 11 HOH HOH . H 6 HOH A 79 479 48 HOH HOH . H 6 HOH A 80 480 53 HOH HOH . H 6 HOH A 81 481 9 HOH HOH . H 6 HOH A 82 482 134 HOH HOH . H 6 HOH A 83 483 132 HOH HOH . H 6 HOH A 84 484 99 HOH HOH . H 6 HOH A 85 485 127 HOH HOH . H 6 HOH A 86 486 7 HOH HOH . H 6 HOH A 87 487 145 HOH HOH . H 6 HOH A 88 488 84 HOH HOH . H 6 HOH A 89 489 140 HOH HOH . H 6 HOH A 90 490 66 HOH HOH . H 6 HOH A 91 491 32 HOH HOH . H 6 HOH A 92 492 126 HOH HOH . H 6 HOH A 93 493 95 HOH HOH . H 6 HOH A 94 494 148 HOH HOH . H 6 HOH A 95 495 8 HOH HOH . H 6 HOH A 96 496 97 HOH HOH . H 6 HOH A 97 497 116 HOH HOH . H 6 HOH A 98 498 119 HOH HOH . H 6 HOH A 99 499 90 HOH HOH . H 6 HOH A 100 500 16 HOH HOH . H 6 HOH A 101 501 70 HOH HOH . H 6 HOH A 102 502 51 HOH HOH . H 6 HOH A 103 503 114 HOH HOH . H 6 HOH A 104 504 146 HOH HOH . H 6 HOH A 105 505 121 HOH HOH . H 6 HOH A 106 506 57 HOH HOH . H 6 HOH A 107 507 6 HOH HOH . H 6 HOH A 108 508 147 HOH HOH . H 6 HOH A 109 509 106 HOH HOH . H 6 HOH A 110 510 85 HOH HOH . H 6 HOH A 111 511 40 HOH HOH . H 6 HOH A 112 512 47 HOH HOH . H 6 HOH A 113 513 117 HOH HOH . H 6 HOH A 114 514 68 HOH HOH . H 6 HOH A 115 515 115 HOH HOH . H 6 HOH A 116 516 44 HOH HOH . H 6 HOH A 117 517 73 HOH HOH . H 6 HOH A 118 518 138 HOH HOH . H 6 HOH A 119 519 122 HOH HOH . H 6 HOH A 120 520 136 HOH HOH . H 6 HOH A 121 521 125 HOH HOH . H 6 HOH A 122 522 131 HOH HOH . H 6 HOH A 123 523 102 HOH HOH . H 6 HOH A 124 524 14 HOH HOH . H 6 HOH A 125 525 109 HOH HOH . H 6 HOH A 126 526 123 HOH HOH . H 6 HOH A 127 527 135 HOH HOH . H 6 HOH A 128 528 100 HOH HOH . H 6 HOH A 129 529 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OP4 UEG . A . G 5 0.555 12.083 -11.838 0.5 17.81 ? OP4 UEG 306 A 1 HETATM 2 O OP4 UEG . B . G 5 1.717 13.552 -11.273 0.5 14.11 ? OP4 UEG 306 A 1 HETATM 3 C C5A UEG . A . G 5 1.481 11.505 -12.751 0.5 17.82 ? C5A UEG 306 A 1 HETATM 4 C C5A UEG . B . G 5 1.223 14.227 -12.439 0.5 14.22 ? C5A UEG 306 A 1 HETATM 5 C C5 UEG . A . G 5 1.744 12.397 -13.936 0.5 17.28 ? C5 UEG 306 A 1 HETATM 6 C C5 UEG . B . G 5 1.713 13.63 -13.725 0.5 13.97 ? C5 UEG 306 A 1 HETATM 7 C C6 UEG . A . G 5 2.269 11.907 -15.114 0.5 17.2 ? C6 UEG 306 A 1 HETATM 8 C C6 UEG . B . G 5 1.908 14.412 -14.839 0.5 14.05 ? C6 UEG 306 A 1 HETATM 9 N N1 UEG . A . G 5 2.503 12.679 -16.186 0.5 16.75 ? N1 UEG 306 A 1 HETATM 10 N N1 UEG . B . G 5 2.357 13.919 -16 0.5 13.91 ? N1 UEG 306 A 1 HETATM 11 C C2 UEG . A . G 5 2.222 13.979 -16.141 0.5 16.59 ? C2 UEG 306 A 1 HETATM 12 C C2 UEG . B . G 5 2.634 12.62 -16.107 0.5 13.83 ? C2 UEG 306 A 1 HETATM 13 C C3 UEG . A . G 5 1.694 14.555 -14.993 0.5 16.76 ? C3 UEG 306 A 1 HETATM 14 C C3 UEG . B . G 5 2.469 11.749 -15.024 0.5 13.91 ? C3 UEG 306 A 1 HETATM 15 C C4 UEG . A . G 5 1.447 13.757 -13.88 0.5 16.79 ? C4 UEG 306 A 1 HETATM 16 C C4 UEG . B . G 5 1.999 12.266 -13.813 0.5 14.28 ? C4 UEG 306 A 1 HETATM 17 C C4A UEG . A . G 5 0.89 14.342 -12.62 0.5 17.09 ? C4A UEG 306 A 1 HETATM 18 C C4A UEG . B . G 5 1.782 11.389 -12.61 0.5 14.81 ? C4A UEG 306 A 1 HETATM 19 O O4A UEG . A . G 5 1.294 13.578 -11.483 0.5 17.48 ? O4A UEG 306 A 1 HETATM 20 O O4A UEG . B . G 5 0.613 11.781 -11.898 0.5 14.91 ? O4A UEG 306 A 1 HETATM 21 O O3 UEG . A . G 5 1.419 15.892 -14.972 0.5 16.59 ? O3 UEG 306 A 1 HETATM 22 O O3 UEG . B . G 5 2.767 10.404 -15.164 0.5 13.13 ? O3 UEG 306 A 1 HETATM 23 C C2A UEG . A . G 5 2.487 14.83 -17.338 0.5 16.27 ? C2A UEG 306 A 1 HETATM 24 C C2A UEG . B . G 5 3.128 12.103 -17.417 0.5 13.92 ? C2A UEG 306 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #