data_9KNC # _model_server_result.job_id 0LZTPG9d7GaJ6QRODmYg4w _model_server_result.datetime_utc '2025-07-15 13:03:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9knc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 9KNC # _exptl.entry_id 9KNC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.145 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-nitro-1~{H}-indole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9KNC _cell.length_a 64.29 _cell.length_b 64.29 _cell.length_c 132.868 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KNC _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H6 N2 O2' _chem_comp.formula_weight 162.145 _chem_comp.id A1EF8 _chem_comp.mon_nstd_flag . _chem_comp.name 6-nitro-1~{H}-indole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C8 A1EF8 doub 1 n y C5 C2 A1EF8 sing 2 n y C8 N1 A1EF8 sing 3 n y C2 C4 A1EF8 doub 4 n y C2 C1 A1EF8 sing 5 n y N1 C1 A1EF8 sing 6 n y C4 C7 A1EF8 sing 7 n y C1 C3 A1EF8 doub 8 n y C7 C6 A1EF8 doub 9 n y C3 C6 A1EF8 sing 10 n y C6 N2 A1EF8 sing 11 n n N2 O1 A1EF8 sing 12 n n N2 O2 A1EF8 doub 13 n n C8 H1 A1EF8 sing 14 n n C3 H2 A1EF8 sing 15 n n N1 H3 A1EF8 sing 16 n n C5 H4 A1EF8 sing 17 n n C4 H5 A1EF8 sing 18 n n C7 H6 A1EF8 sing 19 n n # _atom_sites.entry_id 9KNC _atom_sites.fract_transf_matrix[1][1] 0.015555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1EF8 A 1 501 501 A1EF8 W6N . D 4 PGR A 1 502 1202 PGR PGR . E 4 PGR A 1 503 1203 PGR PGR . F 4 PGR A 1 504 1204 PGR PGR . G 4 PGR A 1 505 1205 PGR PGR . H 4 PGR A 1 506 1206 PGR PGR . I 4 PGR A 1 507 1207 PGR PGR . J 5 HOH A 1 601 56 HOH HOH . J 5 HOH A 2 602 40 HOH HOH . J 5 HOH A 3 603 26 HOH HOH . J 5 HOH A 4 604 54 HOH HOH . J 5 HOH A 5 605 42 HOH HOH . J 5 HOH A 6 606 28 HOH HOH . J 5 HOH A 7 607 2 HOH HOH . J 5 HOH A 8 608 58 HOH HOH . J 5 HOH A 9 609 59 HOH HOH . J 5 HOH A 10 610 23 HOH HOH . J 5 HOH A 11 611 36 HOH HOH . J 5 HOH A 12 612 9 HOH HOH . J 5 HOH A 13 613 30 HOH HOH . J 5 HOH A 14 614 34 HOH HOH . J 5 HOH A 15 615 33 HOH HOH . J 5 HOH A 16 616 32 HOH HOH . J 5 HOH A 17 617 35 HOH HOH . J 5 HOH A 18 618 27 HOH HOH . J 5 HOH A 19 619 21 HOH HOH . J 5 HOH A 20 620 18 HOH HOH . J 5 HOH A 21 621 31 HOH HOH . J 5 HOH A 22 622 16 HOH HOH . J 5 HOH A 23 623 11 HOH HOH . J 5 HOH A 24 624 38 HOH HOH . J 5 HOH A 25 625 4 HOH HOH . J 5 HOH A 26 626 19 HOH HOH . J 5 HOH A 27 627 1 HOH HOH . J 5 HOH A 28 628 22 HOH HOH . J 5 HOH A 29 629 39 HOH HOH . J 5 HOH A 30 630 3 HOH HOH . J 5 HOH A 31 631 63 HOH HOH . J 5 HOH A 32 632 13 HOH HOH . J 5 HOH A 33 633 57 HOH HOH . J 5 HOH A 34 634 12 HOH HOH . J 5 HOH A 35 635 41 HOH HOH . J 5 HOH A 36 636 6 HOH HOH . J 5 HOH A 37 637 14 HOH HOH . J 5 HOH A 38 638 25 HOH HOH . J 5 HOH A 39 639 17 HOH HOH . J 5 HOH A 40 640 24 HOH HOH . J 5 HOH A 41 641 37 HOH HOH . J 5 HOH A 42 642 10 HOH HOH . J 5 HOH A 43 643 5 HOH HOH . J 5 HOH A 44 644 7 HOH HOH . J 5 HOH A 45 645 8 HOH HOH . J 5 HOH A 46 646 61 HOH HOH . J 5 HOH A 47 647 45 HOH HOH . J 5 HOH A 48 648 20 HOH HOH . J 5 HOH A 49 649 15 HOH HOH . J 5 HOH A 50 650 53 HOH HOH . J 5 HOH A 51 651 48 HOH HOH . J 5 HOH A 52 652 49 HOH HOH . J 5 HOH A 53 653 55 HOH HOH . J 5 HOH A 54 654 62 HOH HOH . J 5 HOH A 55 655 44 HOH HOH . J 5 HOH A 56 656 29 HOH HOH . J 5 HOH A 57 657 46 HOH HOH . J 5 HOH A 58 658 47 HOH HOH . J 5 HOH A 59 659 60 HOH HOH . J 5 HOH A 60 660 64 HOH HOH . J 5 HOH A 61 661 51 HOH HOH . J 5 HOH A 62 662 50 HOH HOH . J 5 HOH A 63 663 52 HOH HOH . J 5 HOH A 64 664 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 A1EF8 . . . C 3 -17.441 6.983 -8.382 1 29.13 ? C8 A1EF8 501 A 1 HETATM 2 O O1 A1EF8 . . . C 3 -15.887 1.819 -4.359 1 40.82 ? O1 A1EF8 501 A 1 HETATM 3 N N2 A1EF8 . . . C 3 -15.668 3.052 -4.578 1 36.98 ? N2 A1EF8 501 A 1 HETATM 4 O O2 A1EF8 . . . C 3 -14.825 3.774 -3.804 1 38.78 ? O2 A1EF8 501 A 1 HETATM 5 C C6 A1EF8 . . . C 3 -16.363 3.675 -5.565 1 31.45 ? C6 A1EF8 501 A 1 HETATM 6 C C3 A1EF8 . . . C 3 -15.965 4.935 -5.973 1 26.78 ? C3 A1EF8 501 A 1 HETATM 7 C C1 A1EF8 . . . C 3 -16.644 5.576 -6.92 1 26.99 ? C1 A1EF8 501 A 1 HETATM 8 N N1 A1EF8 . . . C 3 -16.457 6.801 -7.476 1 28.37 ? N1 A1EF8 501 A 1 HETATM 9 C C5 A1EF8 . . . C 3 -18.217 5.882 -8.397 1 26.96 ? C5 A1EF8 501 A 1 HETATM 10 C C2 A1EF8 . . . C 3 -17.742 5.002 -7.495 1 26.61 ? C2 A1EF8 501 A 1 HETATM 11 C C4 A1EF8 . . . C 3 -18.177 3.788 -7.149 1 28.77 ? C4 A1EF8 501 A 1 HETATM 12 C C7 A1EF8 . . . C 3 -17.519 3.076 -6.171 1 29.24 ? C7 A1EF8 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #