data_9KNF # _model_server_result.job_id 9EsW25RI66qRVbIlJySs5g _model_server_result.datetime_utc '2025-07-15 08:17:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9knf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 9KNF # _exptl.entry_id 9KNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.581 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloranyl-2~{H}-indazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9KNF _cell.length_a 64.2 _cell.length_b 64.2 _cell.length_c 138.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -69.435 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H5 Cl N2' _chem_comp.formula_weight 152.581 _chem_comp.id A1EGB _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloranyl-2~{H}-indazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CLAJ CAE A1EGB sing 1 n n CAF CAG A1EGB doub 2 n y CAF CAE A1EGB sing 3 n y CAG CAC A1EGB sing 4 n y CAE CAD A1EGB doub 5 n y CAC CAB A1EGB sing 6 n y CAC NAI A1EGB doub 7 n y CAD CAB A1EGB sing 8 n y CAB CAA A1EGB doub 9 n y NAI NAH A1EGB sing 10 n y CAA NAH A1EGB sing 11 n y CAD H1 A1EGB sing 12 n n CAA H2 A1EGB sing 13 n n NAH H3 A1EGB sing 14 n n CAG H4 A1EGB sing 15 n n CAF H5 A1EGB sing 16 n n # _atom_sites.entry_id 9KNF _atom_sites.fract_transf_matrix[1][1] 0.015576 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1EGB A 1 501 501 A1EGB XT9 . D 4 HOH A 1 601 13 HOH HOH . D 4 HOH A 2 602 51 HOH HOH . D 4 HOH A 3 603 61 HOH HOH . D 4 HOH A 4 604 109 HOH HOH . D 4 HOH A 5 605 35 HOH HOH . D 4 HOH A 6 606 99 HOH HOH . D 4 HOH A 7 607 79 HOH HOH . D 4 HOH A 8 608 12 HOH HOH . D 4 HOH A 9 609 96 HOH HOH . D 4 HOH A 10 610 59 HOH HOH . D 4 HOH A 11 611 25 HOH HOH . D 4 HOH A 12 612 81 HOH HOH . D 4 HOH A 13 613 33 HOH HOH . D 4 HOH A 14 614 57 HOH HOH . D 4 HOH A 15 615 63 HOH HOH . D 4 HOH A 16 616 1 HOH HOH . D 4 HOH A 17 617 19 HOH HOH . D 4 HOH A 18 618 120 HOH HOH . D 4 HOH A 19 619 18 HOH HOH . D 4 HOH A 20 620 72 HOH HOH . D 4 HOH A 21 621 8 HOH HOH . D 4 HOH A 22 622 7 HOH HOH . D 4 HOH A 23 623 49 HOH HOH . D 4 HOH A 24 624 11 HOH HOH . D 4 HOH A 25 625 121 HOH HOH . D 4 HOH A 26 626 14 HOH HOH . D 4 HOH A 27 627 65 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 108 HOH HOH . D 4 HOH A 30 630 6 HOH HOH . D 4 HOH A 31 631 86 HOH HOH . D 4 HOH A 32 632 75 HOH HOH . D 4 HOH A 33 633 62 HOH HOH . D 4 HOH A 34 634 20 HOH HOH . D 4 HOH A 35 635 103 HOH HOH . D 4 HOH A 36 636 21 HOH HOH . D 4 HOH A 37 637 9 HOH HOH . D 4 HOH A 38 638 41 HOH HOH . D 4 HOH A 39 639 2 HOH HOH . D 4 HOH A 40 640 113 HOH HOH . D 4 HOH A 41 641 17 HOH HOH . D 4 HOH A 42 642 70 HOH HOH . D 4 HOH A 43 643 30 HOH HOH . D 4 HOH A 44 644 68 HOH HOH . D 4 HOH A 45 645 50 HOH HOH . D 4 HOH A 46 646 39 HOH HOH . D 4 HOH A 47 647 4 HOH HOH . D 4 HOH A 48 648 88 HOH HOH . D 4 HOH A 49 649 34 HOH HOH . D 4 HOH A 50 650 64 HOH HOH . D 4 HOH A 51 651 29 HOH HOH . D 4 HOH A 52 652 76 HOH HOH . D 4 HOH A 53 653 95 HOH HOH . D 4 HOH A 54 654 111 HOH HOH . D 4 HOH A 55 655 23 HOH HOH . D 4 HOH A 56 656 110 HOH HOH . D 4 HOH A 57 657 5 HOH HOH . D 4 HOH A 58 658 90 HOH HOH . D 4 HOH A 59 659 37 HOH HOH . D 4 HOH A 60 660 66 HOH HOH . D 4 HOH A 61 661 31 HOH HOH . D 4 HOH A 62 662 83 HOH HOH . D 4 HOH A 63 663 54 HOH HOH . D 4 HOH A 64 664 71 HOH HOH . D 4 HOH A 65 665 92 HOH HOH . D 4 HOH A 66 666 16 HOH HOH . D 4 HOH A 67 667 32 HOH HOH . D 4 HOH A 68 668 52 HOH HOH . D 4 HOH A 69 669 60 HOH HOH . D 4 HOH A 70 670 10 HOH HOH . D 4 HOH A 71 671 55 HOH HOH . D 4 HOH A 72 672 46 HOH HOH . D 4 HOH A 73 673 24 HOH HOH . D 4 HOH A 74 674 93 HOH HOH . D 4 HOH A 75 675 107 HOH HOH . D 4 HOH A 76 676 67 HOH HOH . D 4 HOH A 77 677 97 HOH HOH . D 4 HOH A 78 678 53 HOH HOH . D 4 HOH A 79 679 26 HOH HOH . D 4 HOH A 80 680 27 HOH HOH . D 4 HOH A 81 681 116 HOH HOH . D 4 HOH A 82 682 15 HOH HOH . D 4 HOH A 83 683 3 HOH HOH . D 4 HOH A 84 684 43 HOH HOH . D 4 HOH A 85 685 69 HOH HOH . D 4 HOH A 86 686 100 HOH HOH . D 4 HOH A 87 687 22 HOH HOH . D 4 HOH A 88 688 87 HOH HOH . D 4 HOH A 89 689 84 HOH HOH . D 4 HOH A 90 690 101 HOH HOH . D 4 HOH A 91 691 56 HOH HOH . D 4 HOH A 92 692 114 HOH HOH . D 4 HOH A 93 693 123 HOH HOH . D 4 HOH A 94 694 38 HOH HOH . D 4 HOH A 95 695 82 HOH HOH . D 4 HOH A 96 696 40 HOH HOH . D 4 HOH A 97 697 91 HOH HOH . D 4 HOH A 98 698 126 HOH HOH . D 4 HOH A 99 699 115 HOH HOH . D 4 HOH A 100 700 119 HOH HOH . D 4 HOH A 101 701 77 HOH HOH . D 4 HOH A 102 702 122 HOH HOH . D 4 HOH A 103 703 125 HOH HOH . D 4 HOH A 104 704 118 HOH HOH . D 4 HOH A 105 705 42 HOH HOH . D 4 HOH A 106 706 80 HOH HOH . D 4 HOH A 107 707 48 HOH HOH . D 4 HOH A 108 708 104 HOH HOH . D 4 HOH A 109 709 124 HOH HOH . D 4 HOH A 110 710 85 HOH HOH . D 4 HOH A 111 711 117 HOH HOH . D 4 HOH A 112 712 36 HOH HOH . D 4 HOH A 113 713 98 HOH HOH . D 4 HOH A 114 714 112 HOH HOH . D 4 HOH A 115 715 105 HOH HOH . D 4 HOH A 116 716 106 HOH HOH . D 4 HOH A 117 717 94 HOH HOH . D 4 HOH A 118 718 58 HOH HOH . D 4 HOH A 119 719 78 HOH HOH . D 4 HOH A 120 720 44 HOH HOH . D 4 HOH A 121 721 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CLAJ A1EGB . . . C 3 -16.272 -2.398 -28.722 1 82.72 ? CLAJ A1EGB 501 A 1 HETATM 2 C CAE A1EGB . . . C 3 -16.068 -3.829 -28.141 1 42.44 ? CAE A1EGB 501 A 1 HETATM 3 C CAD A1EGB . . . C 3 -16.915 -4.432 -27.2 1 42.07 ? CAD A1EGB 501 A 1 HETATM 4 C CAB A1EGB . . . C 3 -16.657 -5.698 -26.809 1 40.25 ? CAB A1EGB 501 A 1 HETATM 5 C CAA A1EGB . . . C 3 -17.211 -6.509 -25.911 1 43.66 ? CAA A1EGB 501 A 1 HETATM 6 N NAH A1EGB . . . C 3 -16.533 -7.67 -25.875 1 45.26 ? NAH A1EGB 501 A 1 HETATM 7 N NAI A1EGB . . . C 3 -15.529 -7.581 -26.727 1 51.98 ? NAI A1EGB 501 A 1 HETATM 8 C CAC A1EGB . . . C 3 -15.593 -6.374 -27.301 1 43.55 ? CAC A1EGB 501 A 1 HETATM 9 C CAG A1EGB . . . C 3 -14.765 -5.805 -28.203 1 44.82 ? CAG A1EGB 501 A 1 HETATM 10 C CAF A1EGB . . . C 3 -15.005 -4.508 -28.665 1 36.05 ? CAF A1EGB 501 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #