data_9KNI # _model_server_result.job_id qoGqbH7NaMgG7Am79eRrLQ _model_server_result.datetime_utc '2025-08-05 18:35:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9kni # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 9KNI # _exptl.entry_id 9KNI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9KNI _cell.length_a 141.41 _cell.length_b 141.41 _cell.length_c 83.85 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KNI _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 40 n n C1 O2 AKG sing 41 n n C1 C2 AKG sing 42 n n O2 HO2 AKG sing 43 n n C2 O5 AKG doub 44 n n C2 C3 AKG sing 45 n n C3 C4 AKG sing 46 n n C3 H31 AKG sing 47 n n C3 H32 AKG sing 48 n n C4 C5 AKG sing 49 n n C4 H41 AKG sing 50 n n C4 H42 AKG sing 51 n n C5 O3 AKG doub 52 n n C5 O4 AKG sing 53 n n O4 HO4 AKG sing 54 n n # _atom_sites.entry_id 9KNI _atom_sites.fract_transf_matrix[1][1] 0.007072 _atom_sites.fract_transf_matrix[1][2] 0.004083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 601 601 AKG AKG . C 3 A1EF5 A 1 602 602 A1EF5 LIG . D 4 HOH A 1 701 20 HOH HOH . D 4 HOH A 2 702 6 HOH HOH . D 4 HOH A 3 703 17 HOH HOH . D 4 HOH A 4 704 1 HOH HOH . D 4 HOH A 5 705 8 HOH HOH . D 4 HOH A 6 706 5 HOH HOH . D 4 HOH A 7 707 4 HOH HOH . D 4 HOH A 8 708 9 HOH HOH . D 4 HOH A 9 709 15 HOH HOH . D 4 HOH A 10 710 7 HOH HOH . D 4 HOH A 11 711 3 HOH HOH . D 4 HOH A 12 712 12 HOH HOH . D 4 HOH A 13 713 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . B 2 30.736 8.072 24.893 1 104.71 ? C1 AKG 601 A 1 HETATM 2 O O1 AKG . . . B 2 29.748 8.616 24.418 1 99.5 ? O1 AKG 601 A 1 HETATM 3 O O2 AKG . . . B 2 31.622 8.674 25.643 1 101.76 ? O2 AKG 601 A 1 HETATM 4 C C2 AKG . . . B 2 31.019 6.582 24.634 1 90.64 ? C2 AKG 601 A 1 HETATM 5 O O5 AKG . . . B 2 30.272 5.728 25.096 1 82.52 ? O5 AKG 601 A 1 HETATM 6 C C3 AKG . . . B 2 32.222 6.237 23.798 1 87.82 ? C3 AKG 601 A 1 HETATM 7 C C4 AKG . . . B 2 32.23 6.946 22.456 1 86.54 ? C4 AKG 601 A 1 HETATM 8 C C5 AKG . . . B 2 33.518 7.661 22.166 1 94.06 ? C5 AKG 601 A 1 HETATM 9 O O3 AKG . . . B 2 33.766 8.777 22.575 1 87.37 ? O3 AKG 601 A 1 HETATM 10 O O4 AKG . . . B 2 34.341 6.966 21.425 1 95.58 ? O4 AKG 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 432 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #