data_9KQI
#
_model_server_result.job_id            l0TO1X4bB-kEfjFV4GoCtw 
_model_server_result.datetime_utc      '2025-04-24 05:19:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9kqi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":511}' 
#
_entry.id    9KQI 
#
_exptl.entry_id    9KQI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              105.093 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SERINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9KQI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9KQI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 M N N 
? 8 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 197 A GLU 197 1_555 K CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? 
metalc ? metalc2 A OE1 GLU 200 A GLU 200 1_555 K CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc3 A OE1 GLN 217 A GLN 217 1_555 K CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc4 K CA CA . A CA 509 1_555 M O SER . A SER 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc5 B OE1 GLU 197 B GLU 197 1_555 X CA CA . B CA 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
metalc ? metalc6 B OE1 GLU 200 B GLU 200 1_555 X CA CA . B CA 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc7 B OE1 GLN 217 B GLN 217 1_555 X CA CA . B CA 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? 
metalc ? metalc8 X CA CA . B CA 510 1_555 Z O SER . B SER 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
#
_chem_comp.formula           'C3 H7 N O3' 
_chem_comp.formula_weight    105.093 
_chem_comp.id                SER 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              SERINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SER sing 551 n n 
N H SER sing 552 n n 
N H2 SER sing 553 n n 
CA C SER sing 554 n n 
CA CB SER sing 555 n n 
CA HA SER sing 556 n n 
C O SER doub 557 n n 
C OXT SER sing 558 n n 
CB OG SER sing 559 n n 
CB HB2 SER sing 560 n n 
CB HB3 SER sing 561 n n 
OG HG SER sing 562 n n 
OXT HXT SER sing 563 n n 
#
_atom_sites.entry_id                     9KQI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PSF A 1 501 502 PSF PSF . 
D 2 PSF A 1 502 503 PSF PSF . 
E 3 T7X A 1 503 504 T7X T7X . 
F 4 LBN A 1 504 505 LBN LBN . 
G 4 LBN A 1 505 507 LBN LBN . 
H 5 D12 A 1 506 508 D12 D12 . 
I 6 C14 A 1 507 509 C14 C14 . 
J 4 LBN A 1 508 510 LBN LBN . 
K 7 CA A 1 509 512 CA CA . 
L 4 LBN A 1 510 513 LBN LBN . 
M 8 SER A 1 511 514 SER SER . 
N 4 LBN A 1 512 511 LBN LBN . 
O 4 LBN B 1 501 511 LBN LBN . 
P 2 PSF B 1 502 502 PSF PSF . 
Q 2 PSF B 1 503 503 PSF PSF . 
R 3 T7X B 1 504 504 T7X T7X . 
S 4 LBN B 1 505 505 LBN LBN . 
T 4 LBN B 1 506 507 LBN LBN . 
U 5 D12 B 1 507 508 D12 D12 . 
V 6 C14 B 1 508 509 C14 C14 . 
W 4 LBN B 1 509 510 LBN LBN . 
X 7 CA B 1 510 512 CA CA . 
Y 4 LBN B 1 511 513 LBN LBN . 
Z 8 SER B 1 512 514 SER SER . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SER . . . M 8 146.081 105.727 148.39 1 72.78 ? N SER 511 A 1 
HETATM 2 C CA SER . . . M 8 145.03 104.884 147.836 1 77.81 ? CA SER 511 A 1 
HETATM 3 C C SER . . . M 8 145.497 103.437 147.707 1 80.49 ? C SER 511 A 1 
HETATM 4 O O SER . . . M 8 146.499 103.147 147.053 1 79.88 ? O SER 511 A 1 
HETATM 5 C CB SER . . . M 8 144.581 105.416 146.474 1 74.92 ? CB SER 511 A 1 
HETATM 6 O OG SER . . . M 8 143.569 104.599 145.914 1 76.11 ? OG SER 511 A 1 
HETATM 7 O OXT SER . . . M 8 144.881 102.52 148.251 1 78.42 ? OXT SER 511 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           7 
#