data_9KQV # _model_server_result.job_id ldmZ09bG-xRbYfzp2rxzcQ _model_server_result.datetime_utc '2025-04-23 14:27:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9kqv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 9KQV # _exptl.entry_id 9KQV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 344.446 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl (3S)-3-hydroxy-4-({(2S)-4-methyl-1-[(3-methylbutyl)amino]-1-oxopentan-2-yl}amino)-4-oxobutanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9KQV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KQV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 43 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 43 B CYS 43 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A SG CYS 237 A CYS 237 1_555 C C2 E6D . A E6D 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? covale ? covale2 B SG CYS 237 B CYS 237 1_555 D C2 E6D . B E6D 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? # _chem_comp.formula 'C17 H32 N2 O5' _chem_comp.formula_weight 344.446 _chem_comp.id E6D _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl (3S)-3-hydroxy-4-({(2S)-4-methyl-1-[(3-methylbutyl)amino]-1-oxopentan-2-yl}amino)-4-oxobutanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 O17 E6D sing 83 n n O18 C16 E6D doub 84 n n O17 C16 E6D sing 85 n n C16 C2 E6D sing 86 n n C2 C3 E6D sing 87 n n O1 C3 E6D sing 88 n n C3 C4 E6D sing 89 n n C4 O5 E6D doub 90 n n C4 N6 E6D sing 91 n n N6 C7 E6D sing 92 n n C7 C8 E6D sing 93 n n C7 C19 E6D sing 94 n n O9 C8 E6D doub 95 n n C8 N10 E6D sing 96 n n C19 C20 E6D sing 97 n n C22 C20 E6D sing 98 n n C20 C21 E6D sing 99 n n N10 C11 E6D sing 100 n n C12 C11 E6D sing 101 n n C12 C13 E6D sing 102 n n C13 C15 E6D sing 103 n n C13 C14 E6D sing 104 n n C14 H1 E6D sing 105 n n C14 H2 E6D sing 106 n n C14 H3 E6D sing 107 n n C13 H4 E6D sing 108 n n C15 H5 E6D sing 109 n n C15 H6 E6D sing 110 n n C15 H7 E6D sing 111 n n C12 H8 E6D sing 112 n n C12 H9 E6D sing 113 n n C11 H10 E6D sing 114 n n C11 H11 E6D sing 115 n n N10 H12 E6D sing 116 n n C7 H13 E6D sing 117 n n C19 H14 E6D sing 118 n n C19 H15 E6D sing 119 n n C20 H16 E6D sing 120 n n C22 H17 E6D sing 121 n n C22 H18 E6D sing 122 n n C22 H19 E6D sing 123 n n C21 H20 E6D sing 124 n n C21 H21 E6D sing 125 n n C21 H22 E6D sing 126 n n N6 H23 E6D sing 127 n n C3 H24 E6D sing 128 n n O1 H25 E6D sing 129 n n C2 H26 E6D sing 130 n n C2 H27 E6D sing 131 n n C23 H28 E6D sing 132 n n C23 H29 E6D sing 133 n n C23 C24 E6D sing 134 n n C24 H30 E6D sing 135 n n C24 H31 E6D sing 136 n n C24 H32 E6D sing 137 n n # _atom_sites.entry_id 9KQV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 E6D A 1 500 500 E6D E64 . D 2 E6D B 1 500 500 E6D E64 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 E6D . . . D 2 76.65 115.746 102.287 1 47.5 ? C14 E6D 500 B 1 HETATM 2 C C13 E6D . . . D 2 77.259 114.394 101.919 1 47.5 ? C13 E6D 500 B 1 HETATM 3 C C15 E6D . . . D 2 76.283 113.256 102.207 1 47.5 ? C15 E6D 500 B 1 HETATM 4 C C12 E6D . . . D 2 78.587 114.176 102.639 1 47.5 ? C12 E6D 500 B 1 HETATM 5 C C11 E6D . . . D 2 79.788 114.496 101.753 1 47.5 ? C11 E6D 500 B 1 HETATM 6 N N10 E6D . . . D 2 80.759 115.285 102.486 1 47.5 ? N10 E6D 500 B 1 HETATM 7 C C8 E6D . . . D 2 81.962 114.662 103.007 1 47.5 ? C8 E6D 500 B 1 HETATM 8 O O9 E6D . . . D 2 82.144 113.503 102.831 1 47.5 ? O9 E6D 500 B 1 HETATM 9 C C7 E6D . . . D 2 82.972 115.509 103.779 1 47.5 ? C7 E6D 500 B 1 HETATM 10 C C19 E6D . . . D 2 83.323 116.682 102.865 1 47.5 ? C19 E6D 500 B 1 HETATM 11 C C20 E6D . . . D 2 82.157 117.653 102.696 1 47.5 ? C20 E6D 500 B 1 HETATM 12 C C22 E6D . . . D 2 82.658 119.073 102.439 1 47.5 ? C22 E6D 500 B 1 HETATM 13 C C21 E6D . . . D 2 81.225 117.61 103.906 1 47.5 ? C21 E6D 500 B 1 HETATM 14 N N6 E6D . . . D 2 84.164 114.711 104.019 1 47.5 ? N6 E6D 500 B 1 HETATM 15 C C4 E6D . . . D 2 84.971 114.256 102.898 1 47.5 ? C4 E6D 500 B 1 HETATM 16 O O5 E6D . . . D 2 84.66 114.539 101.79 1 47.5 ? O5 E6D 500 B 1 HETATM 17 C C3 E6D . . . D 2 86.216 113.403 103.15 1 47.5 ? C3 E6D 500 B 1 HETATM 18 O O1 E6D . . . D 2 85.973 112.089 102.734 1 47.5 ? O1 E6D 500 B 1 HETATM 19 C C2 E6D . . . D 2 87.385 113.979 102.357 1 47.5 ? C2 E6D 500 B 1 HETATM 20 C C16 E6D . . . D 2 88.426 112.916 102.012 1 47.5 ? C16 E6D 500 B 1 HETATM 21 O O18 E6D . . . D 2 88.941 112.85 100.948 1 47.5 ? O18 E6D 500 B 1 HETATM 22 O O17 E6D . . . D 2 88.724 112.03 103.046 1 47.5 ? O17 E6D 500 B 1 HETATM 23 C C23 E6D . . . D 2 89.419 110.891 102.657 1 47.5 ? C23 E6D 500 B 1 HETATM 24 C C24 E6D . . . D 2 90.575 110.676 103.632 1 47.5 ? C24 E6D 500 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #