data_9KRE
#
_model_server_result.job_id            gXj8-GobqsU4WZRGuyAq2A 
_model_server_result.datetime_utc      '2025-07-27 03:30:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9kre 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":301}' 
#
_entry.id    9KRE 
#
_exptl.entry_id    9KRE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9KRE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9KRE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 245 n n 
N C13 POV sing 246 n n 
N C14 POV sing 247 n n 
N C15 POV sing 248 n n 
P O11 POV sing 249 n n 
P O12 POV sing 250 n n 
P O13 POV sing 251 n n 
P O14 POV doub 252 n n 
C1 C2 POV sing 253 n n 
C1 O11 POV sing 254 n n 
C1 H1 POV sing 255 n n 
C1 H1A POV sing 256 n n 
C2 C3 POV sing 257 n n 
C2 O21 POV sing 258 n n 
C2 H2 POV sing 259 n n 
C3 O31 POV sing 260 n n 
C3 H3 POV sing 261 n n 
C3 H3A POV sing 262 n n 
C210 C211 POV sing 263 n n 
C210 C29 POV doub 264 z n 
C210 H210 POV sing 265 n n 
C310 C311 POV sing 266 n n 
C310 C39 POV sing 267 n n 
C310 H310 POV sing 268 n n 
C310 H31A POV sing 269 n n 
C11 C12 POV sing 270 n n 
C11 O12 POV sing 271 n n 
C11 H11 POV sing 272 n n 
C11 H11A POV sing 273 n n 
C211 C212 POV sing 274 n n 
C211 H211 POV sing 275 n n 
C211 H21A POV sing 276 n n 
C311 C312 POV sing 277 n n 
C311 H311 POV sing 278 n n 
C311 H31B POV sing 279 n n 
C12 H12 POV sing 280 n n 
C12 H12A POV sing 281 n n 
C212 C213 POV sing 282 n n 
C212 H212 POV sing 283 n n 
C212 H21B POV sing 284 n n 
C312 C313 POV sing 285 n n 
C312 H312 POV sing 286 n n 
C312 H31C POV sing 287 n n 
C13 H13 POV sing 288 n n 
C13 H13A POV sing 289 n n 
C13 H13B POV sing 290 n n 
C213 C214 POV sing 291 n n 
C213 H213 POV sing 292 n n 
C213 H21C POV sing 293 n n 
C313 C314 POV sing 294 n n 
C313 H313 POV sing 295 n n 
C313 H31D POV sing 296 n n 
C14 H14 POV sing 297 n n 
C14 H14A POV sing 298 n n 
C14 H14B POV sing 299 n n 
C214 C215 POV sing 300 n n 
C214 H214 POV sing 301 n n 
C214 H21D POV sing 302 n n 
C314 C315 POV sing 303 n n 
C314 H314 POV sing 304 n n 
C314 H31E POV sing 305 n n 
C15 H15 POV sing 306 n n 
C15 H15A POV sing 307 n n 
C15 H15B POV sing 308 n n 
C215 C216 POV sing 309 n n 
C215 H215 POV sing 310 n n 
C215 H21E POV sing 311 n n 
C315 C316 POV sing 312 n n 
C315 H315 POV sing 313 n n 
C315 H31F POV sing 314 n n 
C216 C217 POV sing 315 n n 
C216 H216 POV sing 316 n n 
C216 H21F POV sing 317 n n 
C316 H316 POV sing 318 n n 
C316 H31G POV sing 319 n n 
C316 H31H POV sing 320 n n 
C217 C218 POV sing 321 n n 
C217 H217 POV sing 322 n n 
C217 H21G POV sing 323 n n 
C218 H218 POV sing 324 n n 
C218 H21H POV sing 325 n n 
C218 H21J POV sing 326 n n 
C21 O21 POV sing 327 n n 
C21 C22 POV sing 328 n n 
C21 O22 POV doub 329 n n 
C22 C23 POV sing 330 n n 
C22 H22 POV sing 331 n n 
C22 H22A POV sing 332 n n 
C23 C24 POV sing 333 n n 
C23 H23 POV sing 334 n n 
C23 H23A POV sing 335 n n 
C24 C25 POV sing 336 n n 
C24 H24 POV sing 337 n n 
C24 H24A POV sing 338 n n 
C25 C26 POV sing 339 n n 
C25 H25 POV sing 340 n n 
C25 H25A POV sing 341 n n 
C26 C27 POV sing 342 n n 
C26 H26 POV sing 343 n n 
C26 H26A POV sing 344 n n 
C27 C28 POV sing 345 n n 
C27 H27 POV sing 346 n n 
C27 H27A POV sing 347 n n 
C28 C29 POV sing 348 n n 
C28 H28 POV sing 349 n n 
C28 H28A POV sing 350 n n 
C29 H29 POV sing 351 n n 
C31 O31 POV sing 352 n n 
C31 C32 POV sing 353 n n 
C31 O32 POV doub 354 n n 
C32 C33 POV sing 355 n n 
C32 H32 POV sing 356 n n 
C32 H32A POV sing 357 n n 
C33 C34 POV sing 358 n n 
C33 H33 POV sing 359 n n 
C33 H33A POV sing 360 n n 
C34 C35 POV sing 361 n n 
C34 H34 POV sing 362 n n 
C34 H34A POV sing 363 n n 
C35 C36 POV sing 364 n n 
C35 H35 POV sing 365 n n 
C35 H35A POV sing 366 n n 
C36 C37 POV sing 367 n n 
C36 H36 POV sing 368 n n 
C36 H36A POV sing 369 n n 
C37 C38 POV sing 370 n n 
C37 H37 POV sing 371 n n 
C37 H37A POV sing 372 n n 
C38 C39 POV sing 373 n n 
C38 H38 POV sing 374 n n 
C38 H38A POV sing 375 n n 
C39 H39 POV sing 376 n n 
C39 H39A POV sing 377 n n 
#
_atom_sites.entry_id                     9KRE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 POV A 1 301 301 POV POV . 
I 2 POV A 1 302 301 POV POV . 
J 2 POV B 1 301 301 POV POV . 
K 2 POV B 1 302 301 POV POV . 
L 2 POV C 1 301 301 POV POV . 
M 2 POV D 1 301 301 POV POV . 
N 2 POV E 1 301 301 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . L 2 118.944 146.904 97.295 1 167.88 ? N POV 301 C 1 
HETATM 2 P P POV . . . L 2 122.275 149.184 98.134 1 189.6 ? P POV 301 C 1 
HETATM 3 C C1 POV . . . L 2 124.432 148.477 99.455 1 175.86 ? C1 POV 301 C 1 
HETATM 4 C C2 POV . . . L 2 125.751 149.085 99.04 1 175.24 ? C2 POV 301 C 1 
HETATM 5 C C3 POV . . . L 2 126.412 149.868 100.151 1 165.13 ? C3 POV 301 C 1 
HETATM 6 C C210 POV . . . L 2 122.78 148.757 92.113 1 154.97 ? C210 POV 301 C 1 
HETATM 7 C C310 POV . . . L 2 136.523 152.073 97.897 1 177.34 ? C310 POV 301 C 1 
HETATM 8 C C11 POV . . . L 2 119.72 148.908 98.693 1 179.17 ? C11 POV 301 C 1 
HETATM 9 O O11 POV . . . L 2 123.383 149.456 99.262 1 184.9 ? O11 POV 301 C 1 
HETATM 10 C C211 POV . . . L 2 121.745 147.792 92.606 1 156.8 ? C211 POV 301 C 1 
HETATM 11 C C311 POV . . . L 2 136.938 150.637 98.089 1 178.05 ? C311 POV 301 C 1 
HETATM 12 C C12 POV . . . L 2 119.315 148.373 97.342 1 177.47 ? C12 POV 301 C 1 
HETATM 13 O O12 POV . . . L 2 121.086 148.526 98.986 1 181.9 ? O12 POV 301 C 1 
HETATM 14 C C212 POV . . . L 2 121.227 148.132 93.968 1 163.24 ? C212 POV 301 C 1 
HETATM 15 C C312 POV . . . L 2 138.31 150.466 98.689 1 179.17 ? C312 POV 301 C 1 
HETATM 16 C C13 POV . . . L 2 120.137 146.095 96.931 1 155.42 ? C13 POV 301 C 1 
HETATM 17 O O13 POV . . . L 2 121.827 150.514 97.591 1 182.54 ? O13 POV 301 C 1 
HETATM 18 C C213 POV . . . L 2 121.012 149.616 94.205 1 167.79 ? C213 POV 301 C 1 
HETATM 19 C C313 POV . . . L 2 138.378 150.766 100.165 1 176.93 ? C313 POV 301 C 1 
HETATM 20 C C14 POV . . . L 2 118.447 146.456 98.622 1 157.84 ? C14 POV 301 C 1 
HETATM 21 O O14 POV . . . L 2 122.804 148.129 97.203 1 179.88 ? O14 POV 301 C 1 
HETATM 22 C C214 POV . . . L 2 119.605 150.091 93.943 1 168.05 ? C214 POV 301 C 1 
HETATM 23 C C314 POV . . . L 2 137.334 150.054 100.988 1 173.7 ? C314 POV 301 C 1 
HETATM 24 C C15 POV . . . L 2 117.884 146.673 96.278 1 169.11 ? C15 POV 301 C 1 
HETATM 25 C C215 POV . . . L 2 118.634 148.996 93.579 1 168.02 ? C215 POV 301 C 1 
HETATM 26 C C315 POV . . . L 2 137.061 150.706 102.314 1 167.36 ? C315 POV 301 C 1 
HETATM 27 C C216 POV . . . L 2 117.349 149.494 92.977 1 172.49 ? C216 POV 301 C 1 
HETATM 28 C C316 POV . . . L 2 138.319 151.084 103.058 1 167.4 ? C316 POV 301 C 1 
HETATM 29 C C217 POV . . . L 2 116.454 150.19 93.966 1 174.59 ? C217 POV 301 C 1 
HETATM 30 C C218 POV . . . L 2 115.237 149.382 94.324 1 177.14 ? C218 POV 301 C 1 
HETATM 31 C C21 POV . . . L 2 125.59 149.442 96.67 1 176.8 ? C21 POV 301 C 1 
HETATM 32 O O21 POV . . . L 2 125.562 149.972 97.902 1 180.75 ? O21 POV 301 C 1 
HETATM 33 C C22 POV . . . L 2 126.552 148.297 96.531 1 173.51 ? C22 POV 301 C 1 
HETATM 34 O O22 POV . . . L 2 124.901 149.861 95.778 1 174.26 ? O22 POV 301 C 1 
HETATM 35 C C23 POV . . . L 2 126.81 147.913 95.109 1 167.13 ? C23 POV 301 C 1 
HETATM 36 C C24 POV . . . L 2 127.94 148.714 94.488 1 164.47 ? C24 POV 301 C 1 
HETATM 37 C C25 POV . . . L 2 127.851 148.848 92.99 1 158.87 ? C25 POV 301 C 1 
HETATM 38 C C26 POV . . . L 2 126.947 147.835 92.339 1 158.46 ? C26 POV 301 C 1 
HETATM 39 C C27 POV . . . L 2 126.07 148.399 91.23 1 159.22 ? C27 POV 301 C 1 
HETATM 40 C C28 POV . . . L 2 124.77 147.68 91.051 1 152.97 ? C28 POV 301 C 1 
HETATM 41 C C29 POV . . . L 2 123.578 148.585 91.092 1 154.23 ? C29 POV 301 C 1 
HETATM 42 C C31 POV . . . L 2 128.503 149.44 101.136 1 160.45 ? C31 POV 301 C 1 
HETATM 43 O O31 POV . . . L 2 127.288 148.978 100.874 1 161.23 ? O31 POV 301 C 1 
HETATM 44 C C32 POV . . . L 2 129.163 149.983 99.899 1 161.27 ? C32 POV 301 C 1 
HETATM 45 O O32 POV . . . L 2 128.994 149.417 102.233 1 158.25 ? O32 POV 301 C 1 
HETATM 46 C C33 POV . . . L 2 129.74 148.924 99.015 1 157.45 ? C33 POV 301 C 1 
HETATM 47 C C34 POV . . . L 2 131.206 149.166 98.714 1 152.08 ? C34 POV 301 C 1 
HETATM 48 C C35 POV . . . L 2 131.913 149.997 99.754 1 154.84 ? C35 POV 301 C 1 
HETATM 49 C C36 POV . . . L 2 133.151 150.695 99.255 1 165.45 ? C36 POV 301 C 1 
HETATM 50 C C37 POV . . . L 2 133.694 151.736 100.2 1 168.89 ? C37 POV 301 C 1 
HETATM 51 C C38 POV . . . L 2 134.73 152.646 99.59 1 173.72 ? C38 POV 301 C 1 
HETATM 52 C C39 POV . . . L 2 135.06 152.333 98.154 1 174.48 ? C39 POV 301 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           52 
#