data_9KRF
#
_model_server_result.job_id            vbcEvEe1KpgFccMiq3dkdA 
_model_server_result.datetime_utc      '2025-07-26 03:33:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9krf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    9KRF 
#
_exptl.entry_id    9KRF 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              566.728 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9KRF 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9KRF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C28 H57 N O8 P 1' 
_chem_comp.formula_weight    566.728 
_chem_comp.id                P1O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 P1O sing 222 n n 
O1 H1P P1O sing 223 n n 
O2 P1 P1O doub 224 n n 
P1 O3 P1O sing 225 n n 
P1 O4 P1O sing 226 n n 
O3 C1 P1O sing 227 n n 
C1 C2 P1O sing 228 n n 
C1 H1 P1O sing 229 n n 
C1 H2 P1O sing 230 n n 
C2 N1 P1O sing 231 n n 
C2 H3 P1O sing 232 n n 
C2 H4 P1O sing 233 n n 
N1 C3 P1O sing 234 n n 
N1 C4 P1O sing 235 n n 
N1 C5 P1O sing 236 n n 
C3 H5 P1O sing 237 n n 
C3 H6 P1O sing 238 n n 
C3 H7 P1O sing 239 n n 
C4 H8 P1O sing 240 n n 
C4 H9 P1O sing 241 n n 
C4 H10 P1O sing 242 n n 
C5 H11 P1O sing 243 n n 
C5 H12 P1O sing 244 n n 
C5 H13 P1O sing 245 n n 
O4 C6 P1O sing 246 n n 
C6 C7 P1O sing 247 n n 
C6 H14 P1O sing 248 n n 
C6 H15 P1O sing 249 n n 
C7 C8 P1O sing 250 n n 
C7 O7 P1O sing 251 n n 
C7 H16 P1O sing 252 n n 
C8 O5 P1O sing 253 n n 
C8 H17 P1O sing 254 n n 
C8 H18 P1O sing 255 n n 
O5 C9 P1O sing 256 n n 
C9 O6 P1O doub 257 n n 
C9 C10 P1O sing 258 n n 
C10 C11 P1O sing 259 n n 
C10 H19 P1O sing 260 n n 
C10 H20 P1O sing 261 n n 
C11 C12 P1O sing 262 n n 
C11 H21 P1O sing 263 n n 
C11 H22 P1O sing 264 n n 
C12 C13 P1O sing 265 n n 
C12 H23 P1O sing 266 n n 
C12 H24 P1O sing 267 n n 
C13 C14 P1O sing 268 n n 
C13 H25 P1O sing 269 n n 
C13 H26 P1O sing 270 n n 
C14 C15 P1O sing 271 n n 
C14 H27 P1O sing 272 n n 
C14 H28 P1O sing 273 n n 
C15 C16 P1O sing 274 n n 
C15 H29 P1O sing 275 n n 
C15 H30 P1O sing 276 n n 
C16 C17 P1O sing 277 n n 
C16 H31 P1O sing 278 n n 
C16 H32 P1O sing 279 n n 
C17 C18 P1O sing 280 n n 
C17 H33 P1O sing 281 n n 
C17 H34 P1O sing 282 n n 
C18 H35 P1O sing 283 n n 
C18 H36 P1O sing 284 n n 
C18 H37 P1O sing 285 n n 
O7 C19 P1O sing 286 n n 
C19 O8 P1O doub 287 n n 
C19 C20 P1O sing 288 n n 
C20 C21 P1O sing 289 n n 
C20 H38 P1O sing 290 n n 
C20 H39 P1O sing 291 n n 
C21 C22 P1O sing 292 n n 
C21 H40 P1O sing 293 n n 
C21 H41 P1O sing 294 n n 
C22 C23 P1O sing 295 n n 
C22 H42 P1O sing 296 n n 
C22 H43 P1O sing 297 n n 
C23 C24 P1O sing 298 n n 
C23 H44 P1O sing 299 n n 
C23 H45 P1O sing 300 n n 
C24 C25 P1O sing 301 n n 
C24 H46 P1O sing 302 n n 
C24 H47 P1O sing 303 n n 
C25 C26 P1O sing 304 n n 
C25 H48 P1O sing 305 n n 
C25 H49 P1O sing 306 n n 
C26 C27 P1O sing 307 n n 
C26 H50 P1O sing 308 n n 
C26 H51 P1O sing 309 n n 
C27 C28 P1O sing 310 n n 
C27 H52 P1O sing 311 n n 
C27 H53 P1O sing 312 n n 
C28 H54 P1O sing 313 n n 
C28 H55 P1O sing 314 n n 
C28 H56 P1O sing 315 n n 
#
_atom_sites.entry_id                     9KRF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 P1O G 1 301 301 P1O P1O . 
I 2 P1O A 1 301 301 P1O P1O . 
J 2 P1O B 1 301 301 P1O P1O . 
K 2 P1O C 1 301 301 P1O P1O . 
L 2 P1O D 1 301 301 P1O P1O . 
M 2 P1O E 1 301 301 P1O P1O . 
N 2 P1O F 1 301 301 P1O P1O . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 P1O . . . J 2 106.113 136.035 99.007 1 274.62 ? O1 P1O 301 B 1 
HETATM 2 O O2 P1O . . . J 2 108.276 136.576 100.326 1 272.47 ? O2 P1O 301 B 1 
HETATM 3 P P1 P1O . . . J 2 107.511 136.586 99.041 1 282.94 ? P1 P1O 301 B 1 
HETATM 4 O O3 P1O . . . J 2 107.497 138.086 98.36 1 275.94 ? O3 P1O 301 B 1 
HETATM 5 C C1 P1O . . . J 2 106.769 138.272 97.171 1 275.59 ? C1 P1O 301 B 1 
HETATM 6 C C2 P1O . . . J 2 107.686 138.48 95.984 1 275.62 ? C2 P1O 301 B 1 
HETATM 7 N N1 P1O . . . J 2 107.366 137.788 94.682 1 275.52 ? N1 P1O 301 B 1 
HETATM 8 C C3 P1O . . . J 2 107.533 136.311 94.783 1 275 ? C3 P1O 301 B 1 
HETATM 9 C C4 P1O . . . J 2 108.332 138.307 93.671 1 273.07 ? C4 P1O 301 B 1 
HETATM 10 C C5 P1O . . . J 2 105.984 138.085 94.206 1 272.63 ? C5 P1O 301 B 1 
HETATM 11 O O4 P1O . . . J 2 108.388 135.96 97.815 1 278.85 ? O4 P1O 301 B 1 
HETATM 12 C C6 P1O . . . J 2 109.067 134.733 97.953 1 273.3 ? C6 P1O 301 B 1 
HETATM 13 C C7 P1O . . . J 2 108.135 133.551 97.747 1 272.75 ? C7 P1O 301 B 1 
HETATM 14 C C8 P1O . . . J 2 107.445 133.035 98.993 1 267.06 ? C8 P1O 301 B 1 
HETATM 15 O O5 P1O . . . J 2 107.872 131.718 99.319 1 266.94 ? O5 P1O 301 B 1 
HETATM 16 C C9 P1O . . . J 2 107.304 130.677 98.717 1 266.81 ? C9 P1O 301 B 1 
HETATM 17 O O6 P1O . . . J 2 107.709 130.182 97.697 1 267.84 ? O6 P1O 301 B 1 
HETATM 18 C C10 P1O . . . J 2 106.1 130.213 99.484 1 262.44 ? C10 P1O 301 B 1 
HETATM 19 C C11 P1O . . . J 2 106.219 128.796 100.018 1 260.66 ? C11 P1O 301 B 1 
HETATM 20 C C12 P1O . . . J 2 104.853 128.171 100.266 1 261.29 ? C12 P1O 301 B 1 
HETATM 21 C C13 P1O . . . J 2 104.311 127.417 99.06 1 264.06 ? C13 P1O 301 B 1 
HETATM 22 C C14 P1O . . . J 2 104.737 125.955 99.024 1 264.52 ? C14 P1O 301 B 1 
HETATM 23 C C15 P1O . . . J 2 104.088 125.175 97.888 1 264.91 ? C15 P1O 301 B 1 
HETATM 24 C C16 P1O . . . J 2 104.163 123.665 98.07 1 263.66 ? C16 P1O 301 B 1 
HETATM 25 C C17 P1O . . . J 2 105.408 123.039 97.456 1 262.01 ? C17 P1O 301 B 1 
HETATM 26 C C18 P1O . . . J 2 105.476 121.535 97.677 1 260.4 ? C18 P1O 301 B 1 
HETATM 27 O O7 P1O . . . J 2 107.117 133.875 96.798 1 274.01 ? O7 P1O 301 B 1 
HETATM 28 C C19 P1O . . . J 2 106.673 132.943 95.956 1 271.11 ? C19 P1O 301 B 1 
HETATM 29 O O8 P1O . . . J 2 107.238 132.65 94.932 1 267.45 ? O8 P1O 301 B 1 
HETATM 30 C C20 P1O . . . J 2 105.394 132.323 96.442 1 270.02 ? C20 P1O 301 B 1 
HETATM 31 C C21 P1O . . . J 2 104.357 132.104 95.35 1 267.6 ? C21 P1O 301 B 1 
HETATM 32 C C22 P1O . . . J 2 103.077 131.468 95.88 1 264.13 ? C22 P1O 301 B 1 
HETATM 33 C C23 P1O . . . J 2 103.276 130.094 96.51 1 263.97 ? C23 P1O 301 B 1 
HETATM 34 C C24 P1O . . . J 2 103.902 129.061 95.582 1 263.77 ? C24 P1O 301 B 1 
HETATM 35 C C25 P1O . . . J 2 105.418 128.961 95.716 1 265.81 ? C25 P1O 301 B 1 
HETATM 36 C C26 P1O . . . J 2 105.982 127.616 95.275 1 264.34 ? C26 P1O 301 B 1 
HETATM 37 C C27 P1O . . . J 2 106.987 127.037 96.263 1 263.33 ? C27 P1O 301 B 1 
HETATM 38 C C28 P1O . . . J 2 107.354 125.594 95.949 1 260.97 ? C28 P1O 301 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           530 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           38 
#