data_9KRF
#
_model_server_result.job_id            d9AdohF-hLSXqktQKPiNZg 
_model_server_result.datetime_utc      '2025-07-26 03:33:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9krf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    9KRF 
#
_exptl.entry_id    9KRF 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              566.728 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9KRF 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9KRF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C28 H57 N O8 P 1' 
_chem_comp.formula_weight    566.728 
_chem_comp.id                P1O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 P1O sing 222 n n 
O1 H1P P1O sing 223 n n 
O2 P1 P1O doub 224 n n 
P1 O3 P1O sing 225 n n 
P1 O4 P1O sing 226 n n 
O3 C1 P1O sing 227 n n 
C1 C2 P1O sing 228 n n 
C1 H1 P1O sing 229 n n 
C1 H2 P1O sing 230 n n 
C2 N1 P1O sing 231 n n 
C2 H3 P1O sing 232 n n 
C2 H4 P1O sing 233 n n 
N1 C3 P1O sing 234 n n 
N1 C4 P1O sing 235 n n 
N1 C5 P1O sing 236 n n 
C3 H5 P1O sing 237 n n 
C3 H6 P1O sing 238 n n 
C3 H7 P1O sing 239 n n 
C4 H8 P1O sing 240 n n 
C4 H9 P1O sing 241 n n 
C4 H10 P1O sing 242 n n 
C5 H11 P1O sing 243 n n 
C5 H12 P1O sing 244 n n 
C5 H13 P1O sing 245 n n 
O4 C6 P1O sing 246 n n 
C6 C7 P1O sing 247 n n 
C6 H14 P1O sing 248 n n 
C6 H15 P1O sing 249 n n 
C7 C8 P1O sing 250 n n 
C7 O7 P1O sing 251 n n 
C7 H16 P1O sing 252 n n 
C8 O5 P1O sing 253 n n 
C8 H17 P1O sing 254 n n 
C8 H18 P1O sing 255 n n 
O5 C9 P1O sing 256 n n 
C9 O6 P1O doub 257 n n 
C9 C10 P1O sing 258 n n 
C10 C11 P1O sing 259 n n 
C10 H19 P1O sing 260 n n 
C10 H20 P1O sing 261 n n 
C11 C12 P1O sing 262 n n 
C11 H21 P1O sing 263 n n 
C11 H22 P1O sing 264 n n 
C12 C13 P1O sing 265 n n 
C12 H23 P1O sing 266 n n 
C12 H24 P1O sing 267 n n 
C13 C14 P1O sing 268 n n 
C13 H25 P1O sing 269 n n 
C13 H26 P1O sing 270 n n 
C14 C15 P1O sing 271 n n 
C14 H27 P1O sing 272 n n 
C14 H28 P1O sing 273 n n 
C15 C16 P1O sing 274 n n 
C15 H29 P1O sing 275 n n 
C15 H30 P1O sing 276 n n 
C16 C17 P1O sing 277 n n 
C16 H31 P1O sing 278 n n 
C16 H32 P1O sing 279 n n 
C17 C18 P1O sing 280 n n 
C17 H33 P1O sing 281 n n 
C17 H34 P1O sing 282 n n 
C18 H35 P1O sing 283 n n 
C18 H36 P1O sing 284 n n 
C18 H37 P1O sing 285 n n 
O7 C19 P1O sing 286 n n 
C19 O8 P1O doub 287 n n 
C19 C20 P1O sing 288 n n 
C20 C21 P1O sing 289 n n 
C20 H38 P1O sing 290 n n 
C20 H39 P1O sing 291 n n 
C21 C22 P1O sing 292 n n 
C21 H40 P1O sing 293 n n 
C21 H41 P1O sing 294 n n 
C22 C23 P1O sing 295 n n 
C22 H42 P1O sing 296 n n 
C22 H43 P1O sing 297 n n 
C23 C24 P1O sing 298 n n 
C23 H44 P1O sing 299 n n 
C23 H45 P1O sing 300 n n 
C24 C25 P1O sing 301 n n 
C24 H46 P1O sing 302 n n 
C24 H47 P1O sing 303 n n 
C25 C26 P1O sing 304 n n 
C25 H48 P1O sing 305 n n 
C25 H49 P1O sing 306 n n 
C26 C27 P1O sing 307 n n 
C26 H50 P1O sing 308 n n 
C26 H51 P1O sing 309 n n 
C27 C28 P1O sing 310 n n 
C27 H52 P1O sing 311 n n 
C27 H53 P1O sing 312 n n 
C28 H54 P1O sing 313 n n 
C28 H55 P1O sing 314 n n 
C28 H56 P1O sing 315 n n 
#
_atom_sites.entry_id                     9KRF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 P1O G 1 301 301 P1O P1O . 
I 2 P1O A 1 301 301 P1O P1O . 
J 2 P1O B 1 301 301 P1O P1O . 
K 2 P1O C 1 301 301 P1O P1O . 
L 2 P1O D 1 301 301 P1O P1O . 
M 2 P1O E 1 301 301 P1O P1O . 
N 2 P1O F 1 301 301 P1O P1O . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 P1O . . . K 2 108.979 115.565 99.01 1 276.03 ? O1 P1O 301 C 1 
HETATM 2 O O2 P1O . . . K 2 109.908 117.59 100.332 1 272.61 ? O2 P1O 301 C 1 
HETATM 3 P P1 P1O . . . K 2 109.424 117.001 99.045 1 283.04 ? P1 P1O 301 C 1 
HETATM 4 O O3 P1O . . . K 2 108.246 117.929 98.363 1 274.54 ? O3 P1O 301 C 1 
HETATM 5 C C1 P1O . . . K 2 107.654 117.482 97.168 1 274.12 ? C1 P1O 301 C 1 
HETATM 6 C C2 P1O . . . K 2 108.073 118.332 95.987 1 273.37 ? C2 P1O 301 C 1 
HETATM 7 N N1 P1O . . . K 2 108.418 117.653 94.684 1 273.7 ? N1 P1O 301 C 1 
HETATM 8 C C3 P1O . . . K 2 109.679 116.865 94.787 1 273.28 ? C3 P1O 301 C 1 
HETATM 9 C C4 P1O . . . K 2 108.616 118.734 93.676 1 271.34 ? C4 P1O 301 C 1 
HETATM 10 C C5 P1O . . . K 2 107.327 116.757 94.204 1 271.77 ? C5 P1O 301 C 1 
HETATM 11 O O4 P1O . . . K 2 110.464 117.294 97.821 1 277.4 ? O4 P1O 301 C 1 
HETATM 12 C C6 P1O . . . K 2 111.847 117.067 97.966 1 272.41 ? C6 P1O 301 C 1 
HETATM 13 C C7 P1O . . . K 2 112.199 115.605 97.754 1 272.97 ? C7 P1O 301 C 1 
HETATM 14 C C8 P1O . . . K 2 112.178 114.738 98.996 1 268.37 ? C8 P1O 301 C 1 
HETATM 15 O O5 P1O . . . K 2 113.475 114.254 99.319 1 268.39 ? O5 P1O 301 C 1 
HETATM 16 C C9 P1O . . . K 2 113.935 113.159 98.721 1 268.48 ? C9 P1O 301 C 1 
HETATM 17 O O6 P1O . . . K 2 114.578 113.163 97.703 1 268.19 ? O6 P1O 301 C 1 
HETATM 18 C C10 P1O . . . K 2 113.541 111.93 99.488 1 264.91 ? C10 P1O 301 C 1 
HETATM 19 C C11 P1O . . . K 2 114.72 111.137 100.026 1 263.19 ? C11 P1O 301 C 1 
HETATM 20 C C12 P1O . . . K 2 114.354 109.679 100.27 1 263.64 ? C12 P1O 301 C 1 
HETATM 21 C C13 P1O . . . K 2 114.61 108.787 99.063 1 265.28 ? C13 P1O 301 C 1 
HETATM 22 C C14 P1O . . . K 2 116.019 108.212 99.027 1 265.68 ? C14 P1O 301 C 1 
HETATM 23 C C15 P1O . . . K 2 116.229 107.222 97.889 1 264.68 ? C15 P1O 301 C 1 
HETATM 24 C C16 P1O . . . K 2 117.455 106.337 98.073 1 262.66 ? C16 P1O 301 C 1 
HETATM 25 C C17 P1O . . . K 2 118.722 106.916 97.458 1 260.49 ? C17 P1O 301 C 1 
HETATM 26 C C18 P1O . . . K 2 119.938 106.028 97.68 1 257.63 ? C18 P1O 301 C 1 
HETATM 27 O O7 P1O . . . K 2 111.314 115.01 96.803 1 274.14 ? O7 P1O 301 C 1 
HETATM 28 C C19 P1O . . . K 2 111.769 114.086 95.958 1 270.96 ? C19 P1O 301 C 1 
HETATM 29 O O8 P1O . . . K 2 112.348 114.35 94.934 1 266.82 ? O8 P1O 301 C 1 
HETATM 30 C C20 P1O . . . K 2 111.461 112.697 96.441 1 270.3 ? C20 P1O 301 C 1 
HETATM 31 C C21 P1O . . . K 2 110.985 111.752 95.349 1 267.57 ? C21 P1O 301 C 1 
HETATM 32 C C22 P1O . . . K 2 110.683 110.355 95.878 1 264.81 ? C22 P1O 301 C 1 
HETATM 33 C C23 P1O . . . K 2 111.88 109.652 96.509 1 264.72 ? C23 P1O 301 C 1 
HETATM 34 C C24 P1O . . . K 2 113.079 109.498 95.582 1 264.48 ? C24 P1O 301 C 1 
HETATM 35 C C25 P1O . . . K 2 114.103 110.62 95.717 1 265.65 ? C25 P1O 301 C 1 
HETATM 36 C C26 P1O . . . K 2 115.506 110.222 95.277 1 264.29 ? C26 P1O 301 C 1 
HETATM 37 C C27 P1O . . . K 2 116.585 110.648 96.265 1 263.12 ? C27 P1O 301 C 1 
HETATM 38 C C28 P1O . . . K 2 117.941 110.033 95.953 1 261.62 ? C28 P1O 301 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           38 
#