data_9KRO
#
_model_server_result.job_id            PPbys6gIG8KbSuxPM8hMWA 
_model_server_result.datetime_utc      '2025-06-23 21:51:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9kro 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    9KRO 
#
_exptl.entry_id    9KRO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              422.34 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Mangiferin 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9KRO 
_cell.length_a            118.82 
_cell.length_b            118.82 
_cell.length_c            163.6 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9KRO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C19 H18 O11' 
_chem_comp.formula_weight    422.34 
_chem_comp.id                HZI 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              Mangiferin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2-[(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-1,3,6,7-tetrakis(oxidanyl)xanthen-9-one 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C3 HZI sing 152 n n 
C4 O4 HZI sing 153 n n 
C4 C3 HZI sing 154 n n 
C4 C5 HZI sing 155 n n 
C3 C2 HZI sing 156 n n 
C6 C5 HZI sing 157 n n 
C6 O6 HZI sing 158 n n 
C2 O2 HZI sing 159 n n 
C2 C1 HZI sing 160 n n 
C5 O5 HZI sing 161 n n 
O5 C1 HZI sing 162 n n 
C1 C12 HZI sing 163 n n 
O14 C13 HZI sing 164 n n 
C12 C13 HZI sing 165 n y 
C12 C29 HZI doub 166 n y 
C13 C15 HZI doub 167 n y 
C15 C16 HZI sing 168 n y 
O30 C29 HZI sing 169 n n 
C29 C28 HZI sing 170 n y 
C16 C28 HZI doub 171 n y 
C16 O17 HZI sing 172 n n 
C28 C26 HZI sing 173 n n 
O17 C18 HZI sing 174 n n 
C26 O27 HZI doub 175 n n 
C26 C25 HZI sing 176 n n 
C18 C25 HZI doub 177 n y 
C18 C19 HZI sing 178 n y 
C25 C24 HZI sing 179 n y 
C19 C20 HZI doub 180 n y 
C24 C22 HZI doub 181 n y 
C20 C22 HZI sing 182 n y 
C20 O21 HZI sing 183 n n 
C22 O23 HZI sing 184 n n 
C1 H1 HZI sing 185 n n 
C5 H4 HZI sing 186 n n 
C6 H61 HZI sing 187 n n 
C6 H62 HZI sing 188 n n 
C4 H6 HZI sing 189 n n 
C3 H3 HZI sing 190 n n 
C2 H2 HZI sing 191 n n 
C15 H8 HZI sing 192 n n 
C19 H9 HZI sing 193 n n 
C24 H10 HZI sing 194 n n 
O6 HO6 HZI sing 195 n n 
O4 HO4 HZI sing 196 n n 
O3 HO3 HZI sing 197 n n 
O2 HO2 HZI sing 198 n n 
O21 H16 HZI sing 199 n n 
O23 H17 HZI sing 200 n n 
O30 H18 HZI sing 201 n n 
O14 H11 HZI sing 202 n n 
#
_atom_sites.entry_id                     9KRO 
_atom_sites.fract_transf_matrix[1][1]    0.008416 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008416 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006112 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLS A 1 501 502 PLS PLS . 
D 3 HZI A 1 502 503 HZI HZI . 
E 2 PLS B 1 501 502 PLS PLS . 
F 3 HZI B 1 502 503 HZI HZI . 
G 4 HOH A 1 601 145 HOH HOH . 
G 4 HOH A 2 602 159 HOH HOH . 
G 4 HOH A 3 603 126 HOH HOH . 
G 4 HOH A 4 604 167 HOH HOH . 
G 4 HOH A 5 605 187 HOH HOH . 
G 4 HOH A 6 606 3 HOH HOH . 
G 4 HOH A 7 607 61 HOH HOH . 
G 4 HOH A 8 608 64 HOH HOH . 
G 4 HOH A 9 609 164 HOH HOH . 
G 4 HOH A 10 610 8 HOH HOH . 
G 4 HOH A 11 611 37 HOH HOH . 
G 4 HOH A 12 612 56 HOH HOH . 
G 4 HOH A 13 613 160 HOH HOH . 
G 4 HOH A 14 614 139 HOH HOH . 
G 4 HOH A 15 615 49 HOH HOH . 
G 4 HOH A 16 616 82 HOH HOH . 
G 4 HOH A 17 617 154 HOH HOH . 
G 4 HOH A 18 618 168 HOH HOH . 
G 4 HOH A 19 619 68 HOH HOH . 
G 4 HOH A 20 620 4 HOH HOH . 
G 4 HOH A 21 621 17 HOH HOH . 
G 4 HOH A 22 622 98 HOH HOH . 
G 4 HOH A 23 623 46 HOH HOH . 
G 4 HOH A 24 624 31 HOH HOH . 
G 4 HOH A 25 625 121 HOH HOH . 
G 4 HOH A 26 626 13 HOH HOH . 
G 4 HOH A 27 627 182 HOH HOH . 
G 4 HOH A 28 628 65 HOH HOH . 
G 4 HOH A 29 629 21 HOH HOH . 
G 4 HOH A 30 630 147 HOH HOH . 
G 4 HOH A 31 631 88 HOH HOH . 
G 4 HOH A 32 632 158 HOH HOH . 
G 4 HOH A 33 633 86 HOH HOH . 
G 4 HOH A 34 634 18 HOH HOH . 
G 4 HOH A 35 635 59 HOH HOH . 
G 4 HOH A 36 636 103 HOH HOH . 
G 4 HOH A 37 637 116 HOH HOH . 
G 4 HOH A 38 638 14 HOH HOH . 
G 4 HOH A 39 639 11 HOH HOH . 
G 4 HOH A 40 640 50 HOH HOH . 
G 4 HOH A 41 641 120 HOH HOH . 
G 4 HOH A 42 642 117 HOH HOH . 
G 4 HOH A 43 643 66 HOH HOH . 
G 4 HOH A 44 644 132 HOH HOH . 
G 4 HOH A 45 645 105 HOH HOH . 
G 4 HOH A 46 646 7 HOH HOH . 
G 4 HOH A 47 647 39 HOH HOH . 
G 4 HOH A 48 648 22 HOH HOH . 
G 4 HOH A 49 649 89 HOH HOH . 
G 4 HOH A 50 650 165 HOH HOH . 
G 4 HOH A 51 651 90 HOH HOH . 
G 4 HOH A 52 652 93 HOH HOH . 
G 4 HOH A 53 653 28 HOH HOH . 
G 4 HOH A 54 654 104 HOH HOH . 
G 4 HOH A 55 655 20 HOH HOH . 
G 4 HOH A 56 656 109 HOH HOH . 
G 4 HOH A 57 657 72 HOH HOH . 
G 4 HOH A 58 658 45 HOH HOH . 
G 4 HOH A 59 659 67 HOH HOH . 
G 4 HOH A 60 660 92 HOH HOH . 
G 4 HOH A 61 661 38 HOH HOH . 
G 4 HOH A 62 662 40 HOH HOH . 
G 4 HOH A 63 663 41 HOH HOH . 
G 4 HOH A 64 664 25 HOH HOH . 
G 4 HOH A 65 665 108 HOH HOH . 
G 4 HOH A 66 666 84 HOH HOH . 
G 4 HOH A 67 667 74 HOH HOH . 
G 4 HOH A 68 668 53 HOH HOH . 
G 4 HOH A 69 669 135 HOH HOH . 
G 4 HOH A 70 670 181 HOH HOH . 
G 4 HOH A 71 671 33 HOH HOH . 
G 4 HOH A 72 672 173 HOH HOH . 
G 4 HOH A 73 673 176 HOH HOH . 
G 4 HOH A 74 674 156 HOH HOH . 
G 4 HOH A 75 675 194 HOH HOH . 
G 4 HOH A 76 676 150 HOH HOH . 
G 4 HOH A 77 677 143 HOH HOH . 
G 4 HOH A 78 678 197 HOH HOH . 
G 4 HOH A 79 679 87 HOH HOH . 
G 4 HOH A 80 680 102 HOH HOH . 
G 4 HOH A 81 681 113 HOH HOH . 
G 4 HOH A 82 682 100 HOH HOH . 
G 4 HOH A 83 683 131 HOH HOH . 
G 4 HOH A 84 684 118 HOH HOH . 
G 4 HOH A 85 685 157 HOH HOH . 
G 4 HOH A 86 686 171 HOH HOH . 
G 4 HOH A 87 687 133 HOH HOH . 
G 4 HOH A 88 688 151 HOH HOH . 
G 4 HOH A 89 689 170 HOH HOH . 
G 4 HOH A 90 690 172 HOH HOH . 
G 4 HOH A 91 691 179 HOH HOH . 
G 4 HOH A 92 692 119 HOH HOH . 
G 4 HOH A 93 693 166 HOH HOH . 
G 4 HOH A 94 694 146 HOH HOH . 
G 4 HOH A 95 695 184 HOH HOH . 
G 4 HOH A 96 696 188 HOH HOH . 
G 4 HOH A 97 697 196 HOH HOH . 
G 4 HOH A 98 698 141 HOH HOH . 
G 4 HOH A 99 699 110 HOH HOH . 
G 4 HOH A 100 700 192 HOH HOH . 
G 4 HOH A 101 701 177 HOH HOH . 
G 4 HOH A 102 702 189 HOH HOH . 
G 4 HOH A 103 703 174 HOH HOH . 
G 4 HOH A 104 704 138 HOH HOH . 
G 4 HOH A 105 705 44 HOH HOH . 
G 4 HOH A 106 706 128 HOH HOH . 
G 4 HOH A 107 707 161 HOH HOH . 
G 4 HOH A 108 708 193 HOH HOH . 
H 4 HOH B 1 601 175 HOH HOH . 
H 4 HOH B 2 602 114 HOH HOH . 
H 4 HOH B 3 603 125 HOH HOH . 
H 4 HOH B 4 604 9 HOH HOH . 
H 4 HOH B 5 605 178 HOH HOH . 
H 4 HOH B 6 606 24 HOH HOH . 
H 4 HOH B 7 607 195 HOH HOH . 
H 4 HOH B 8 608 12 HOH HOH . 
H 4 HOH B 9 609 112 HOH HOH . 
H 4 HOH B 10 610 6 HOH HOH . 
H 4 HOH B 11 611 51 HOH HOH . 
H 4 HOH B 12 612 54 HOH HOH . 
H 4 HOH B 13 613 96 HOH HOH . 
H 4 HOH B 14 614 71 HOH HOH . 
H 4 HOH B 15 615 2 HOH HOH . 
H 4 HOH B 16 616 85 HOH HOH . 
H 4 HOH B 17 617 122 HOH HOH . 
H 4 HOH B 18 618 35 HOH HOH . 
H 4 HOH B 19 619 5 HOH HOH . 
H 4 HOH B 20 620 58 HOH HOH . 
H 4 HOH B 21 621 76 HOH HOH . 
H 4 HOH B 22 622 16 HOH HOH . 
H 4 HOH B 23 623 1 HOH HOH . 
H 4 HOH B 24 624 69 HOH HOH . 
H 4 HOH B 25 625 23 HOH HOH . 
H 4 HOH B 26 626 107 HOH HOH . 
H 4 HOH B 27 627 42 HOH HOH . 
H 4 HOH B 28 628 36 HOH HOH . 
H 4 HOH B 29 629 30 HOH HOH . 
H 4 HOH B 30 630 75 HOH HOH . 
H 4 HOH B 31 631 77 HOH HOH . 
H 4 HOH B 32 632 63 HOH HOH . 
H 4 HOH B 33 633 94 HOH HOH . 
H 4 HOH B 34 634 62 HOH HOH . 
H 4 HOH B 35 635 73 HOH HOH . 
H 4 HOH B 36 636 19 HOH HOH . 
H 4 HOH B 37 637 83 HOH HOH . 
H 4 HOH B 38 638 70 HOH HOH . 
H 4 HOH B 39 639 32 HOH HOH . 
H 4 HOH B 40 640 183 HOH HOH . 
H 4 HOH B 41 641 29 HOH HOH . 
H 4 HOH B 42 642 27 HOH HOH . 
H 4 HOH B 43 643 80 HOH HOH . 
H 4 HOH B 44 644 15 HOH HOH . 
H 4 HOH B 45 645 47 HOH HOH . 
H 4 HOH B 46 646 115 HOH HOH . 
H 4 HOH B 47 647 34 HOH HOH . 
H 4 HOH B 48 648 81 HOH HOH . 
H 4 HOH B 49 649 169 HOH HOH . 
H 4 HOH B 50 650 60 HOH HOH . 
H 4 HOH B 51 651 95 HOH HOH . 
H 4 HOH B 52 652 57 HOH HOH . 
H 4 HOH B 53 653 140 HOH HOH . 
H 4 HOH B 54 654 48 HOH HOH . 
H 4 HOH B 55 655 97 HOH HOH . 
H 4 HOH B 56 656 148 HOH HOH . 
H 4 HOH B 57 657 26 HOH HOH . 
H 4 HOH B 58 658 10 HOH HOH . 
H 4 HOH B 59 659 79 HOH HOH . 
H 4 HOH B 60 660 52 HOH HOH . 
H 4 HOH B 61 661 155 HOH HOH . 
H 4 HOH B 62 662 99 HOH HOH . 
H 4 HOH B 63 663 55 HOH HOH . 
H 4 HOH B 64 664 190 HOH HOH . 
H 4 HOH B 65 665 106 HOH HOH . 
H 4 HOH B 66 666 124 HOH HOH . 
H 4 HOH B 67 667 43 HOH HOH . 
H 4 HOH B 68 668 180 HOH HOH . 
H 4 HOH B 69 669 137 HOH HOH . 
H 4 HOH B 70 670 185 HOH HOH . 
H 4 HOH B 71 671 130 HOH HOH . 
H 4 HOH B 72 672 101 HOH HOH . 
H 4 HOH B 73 673 144 HOH HOH . 
H 4 HOH B 74 674 129 HOH HOH . 
H 4 HOH B 75 675 78 HOH HOH . 
H 4 HOH B 76 676 186 HOH HOH . 
H 4 HOH B 77 677 163 HOH HOH . 
H 4 HOH B 78 678 142 HOH HOH . 
H 4 HOH B 79 679 123 HOH HOH . 
H 4 HOH B 80 680 91 HOH HOH . 
H 4 HOH B 81 681 127 HOH HOH . 
H 4 HOH B 82 682 149 HOH HOH . 
H 4 HOH B 83 683 136 HOH HOH . 
H 4 HOH B 84 684 134 HOH HOH . 
H 4 HOH B 85 685 153 HOH HOH . 
H 4 HOH B 86 686 191 HOH HOH . 
H 4 HOH B 87 687 162 HOH HOH . 
H 4 HOH B 88 688 152 HOH HOH . 
H 4 HOH B 89 689 199 HOH HOH . 
H 4 HOH B 90 690 111 HOH HOH . 
H 4 HOH B 91 691 198 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HZI . . . D 3 -9.065 23.281 25.858 0.77 60.85 ? C1 HZI 502 A 1 
HETATM 2 C C5 HZI . . . D 3 -9.582 22.251 23.556 0.77 65.06 ? C5 HZI 502 A 1 
HETATM 3 C C6 HZI . . . D 3 -8.776 21.14 22.935 0.77 58.49 ? C6 HZI 502 A 1 
HETATM 4 C C4 HZI . . . D 3 -9.085 23.591 22.987 0.77 59.54 ? C4 HZI 502 A 1 
HETATM 5 C C3 HZI . . . D 3 -8.143 24.36 23.893 0.77 63.73 ? C3 HZI 502 A 1 
HETATM 6 C C2 HZI . . . D 3 -7.775 23.647 25.149 0.77 63.3 ? C2 HZI 502 A 1 
HETATM 7 C C12 HZI . . . D 3 -8.885 22.919 27.346 0.77 58.63 ? C12 HZI 502 A 1 
HETATM 8 C C13 HZI . . . D 3 -8.21 21.725 27.713 0.77 57.28 ? C13 HZI 502 A 1 
HETATM 9 C C15 HZI . . . D 3 -8.063 21.402 29.118 0.77 51.99 ? C15 HZI 502 A 1 
HETATM 10 C C16 HZI . . . D 3 -8.6 22.297 30.154 0.77 53 ? C16 HZI 502 A 1 
HETATM 11 C C18 HZI . . . D 3 -8.917 22.767 32.49 0.77 53.48 ? C18 HZI 502 A 1 
HETATM 12 C C19 HZI . . . D 3 -8.679 22.293 33.811 0.77 53.06 ? C19 HZI 502 A 1 
HETATM 13 C C20 HZI . . . D 3 -9.124 23.03 34.891 0.77 55.82 ? C20 HZI 502 A 1 
HETATM 14 C C22 HZI . . . D 3 -9.816 24.255 34.701 0.77 53.93 ? C22 HZI 502 A 1 
HETATM 15 C C24 HZI . . . D 3 -10.064 24.74 33.396 0.77 50.98 ? C24 HZI 502 A 1 
HETATM 16 C C25 HZI . . . D 3 -9.603 23.979 32.283 0.77 56.38 ? C25 HZI 502 A 1 
HETATM 17 C C26 HZI . . . D 3 -9.793 24.364 30.853 0.77 56.04 ? C26 HZI 502 A 1 
HETATM 18 C C28 HZI . . . D 3 -9.254 23.464 29.794 0.77 54.48 ? C28 HZI 502 A 1 
HETATM 19 C C29 HZI . . . D 3 -9.402 23.778 28.38 0.77 59.59 ? C29 HZI 502 A 1 
HETATM 20 O O5 HZI . . . D 3 -9.644 22.122 25.059 0.77 72.88 ? O5 HZI 502 A 1 
HETATM 21 O O6 HZI . . . D 3 -8.783 19.972 23.775 0.77 61.38 ? O6 HZI 502 A 1 
HETATM 22 O O4 HZI . . . D 3 -10.216 24.426 22.653 0.77 59.31 ? O4 HZI 502 A 1 
HETATM 23 O O3 HZI . . . D 3 -6.912 24.628 23.209 0.77 67.5 ? O3 HZI 502 A 1 
HETATM 24 O O2 HZI . . . D 3 -6.824 24.454 25.9 0.77 58.44 ? O2 HZI 502 A 1 
HETATM 25 O O14 HZI . . . D 3 -7.716 20.886 26.7 0.77 54.02 ? O14 HZI 502 A 1 
HETATM 26 O O17 HZI . . . D 3 -8.458 21.974 31.49 0.77 55.3 ? O17 HZI 502 A 1 
HETATM 27 O O21 HZI . . . D 3 -8.895 22.572 36.193 0.77 60.51 ? O21 HZI 502 A 1 
HETATM 28 O O23 HZI . . . D 3 -10.2 24.903 35.8 0.77 55.93 ? O23 HZI 502 A 1 
HETATM 29 O O27 HZI . . . D 3 -10.373 25.394 30.568 0.77 59.6 ? O27 HZI 502 A 1 
HETATM 30 O O30 HZI . . . D 3 -10.074 24.991 28.043 0.77 65.23 ? O30 HZI 502 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#