data_9KSV
#
_model_server_result.job_id            AlswCAoEAEBH-6PaxI_3QA 
_model_server_result.datetime_utc      '2025-06-27 15:45:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ksv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    9KSV 
#
_exptl.entry_id    9KSV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              432.378 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Apigetrin 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9KSV 
_cell.length_a            75.16 
_cell.length_b            75.16 
_cell.length_c            162.81 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9KSV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H20 O10' 
_chem_comp.formula_weight    432.378 
_chem_comp.id                A1EGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Apigetrin 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'apigenin 7-O-beta-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAD CAO A1EGT sing 1 n n 
OAA CAR A1EGT doub 2 n n 
CAR CAT A1EGT sing 3 n n 
CAR CAJ A1EGT sing 4 n n 
CAO CAT A1EGT doub 5 n y 
CAO CAI A1EGT sing 6 n y 
CAT CAS A1EGT sing 7 n y 
CAI CAN A1EGT doub 8 n y 
CAJ CAQ A1EGT doub 9 n n 
C5 C6 A1EGT sing 10 n n 
C5 O5 A1EGT sing 11 n n 
C5 C4 A1EGT sing 12 n n 
C6 O6 A1EGT sing 13 n n 
CAS OAL A1EGT sing 14 n n 
CAS CAK A1EGT doub 15 n y 
O4 C4 A1EGT sing 16 n n 
CAQ OAL A1EGT sing 17 n n 
CAQ CAP A1EGT sing 18 n n 
CAN CAK A1EGT sing 19 n y 
CAN OAC A1EGT sing 20 n n 
C1 O5 A1EGT sing 21 n n 
C1 OAC A1EGT sing 22 n n 
C1 C2 A1EGT sing 23 n n 
CAH CAP A1EGT doub 24 n y 
CAH CAF A1EGT sing 25 n y 
C3 C4 A1EGT sing 26 n n 
C3 C2 A1EGT sing 27 n n 
C3 O3 A1EGT sing 28 n n 
O2 C2 A1EGT sing 29 n n 
CAP CAG A1EGT sing 30 n y 
CAF CAM A1EGT doub 31 n y 
CAG CAE A1EGT doub 32 n y 
CAM CAE A1EGT sing 33 n y 
CAM OAB A1EGT sing 34 n n 
C4 H4 A1EGT sing 35 n n 
C6 H61 A1EGT sing 36 n n 
C6 H62 A1EGT sing 37 n n 
C5 H5 A1EGT sing 38 n n 
C1 H1 A1EGT sing 39 n n 
CAK HAK A1EGT sing 40 n n 
CAG HAG A1EGT sing 41 n n 
CAJ HAJ A1EGT sing 42 n n 
CAE HAE A1EGT sing 43 n n 
CAF HAF A1EGT sing 44 n n 
CAH HAH A1EGT sing 45 n n 
C3 H3 A1EGT sing 46 n n 
CAI HAI A1EGT sing 47 n n 
C2 H2 A1EGT sing 48 n n 
OAD HOAD A1EGT sing 49 n n 
OAB HOAB A1EGT sing 50 n n 
O6 HO6 A1EGT sing 51 n n 
O4 HO4 A1EGT sing 52 n n 
O3 HO3 A1EGT sing 53 n n 
O2 HO2 A1EGT sing 54 n n 
#
_atom_sites.entry_id                     9KSV 
_atom_sites.fract_transf_matrix[1][1]    0.013305 
_atom_sites.fract_transf_matrix[1][2]    0.007682 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015363 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006142 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1EGT A 1 501 501 A1EGT A7G . 
C 3 UDP A 1 502 502 UDP UDP . 
D 4 HOH A 1 601 33 HOH HOH . 
D 4 HOH A 2 602 37 HOH HOH . 
D 4 HOH A 3 603 41 HOH HOH . 
D 4 HOH A 4 604 5 HOH HOH . 
D 4 HOH A 5 605 64 HOH HOH . 
D 4 HOH A 6 606 38 HOH HOH . 
D 4 HOH A 7 607 55 HOH HOH . 
D 4 HOH A 8 608 60 HOH HOH . 
D 4 HOH A 9 609 4 HOH HOH . 
D 4 HOH A 10 610 11 HOH HOH . 
D 4 HOH A 11 611 14 HOH HOH . 
D 4 HOH A 12 612 7 HOH HOH . 
D 4 HOH A 13 613 3 HOH HOH . 
D 4 HOH A 14 614 47 HOH HOH . 
D 4 HOH A 15 615 17 HOH HOH . 
D 4 HOH A 16 616 12 HOH HOH . 
D 4 HOH A 17 617 57 HOH HOH . 
D 4 HOH A 18 618 1 HOH HOH . 
D 4 HOH A 19 619 6 HOH HOH . 
D 4 HOH A 20 620 71 HOH HOH . 
D 4 HOH A 21 621 52 HOH HOH . 
D 4 HOH A 22 622 27 HOH HOH . 
D 4 HOH A 23 623 10 HOH HOH . 
D 4 HOH A 24 624 72 HOH HOH . 
D 4 HOH A 25 625 42 HOH HOH . 
D 4 HOH A 26 626 44 HOH HOH . 
D 4 HOH A 27 627 13 HOH HOH . 
D 4 HOH A 28 628 70 HOH HOH . 
D 4 HOH A 29 629 58 HOH HOH . 
D 4 HOH A 30 630 75 HOH HOH . 
D 4 HOH A 31 631 22 HOH HOH . 
D 4 HOH A 32 632 15 HOH HOH . 
D 4 HOH A 33 633 43 HOH HOH . 
D 4 HOH A 34 634 40 HOH HOH . 
D 4 HOH A 35 635 34 HOH HOH . 
D 4 HOH A 36 636 68 HOH HOH . 
D 4 HOH A 37 637 50 HOH HOH . 
D 4 HOH A 38 638 16 HOH HOH . 
D 4 HOH A 39 639 19 HOH HOH . 
D 4 HOH A 40 640 24 HOH HOH . 
D 4 HOH A 41 641 74 HOH HOH . 
D 4 HOH A 42 642 48 HOH HOH . 
D 4 HOH A 43 643 23 HOH HOH . 
D 4 HOH A 44 644 28 HOH HOH . 
D 4 HOH A 45 645 35 HOH HOH . 
D 4 HOH A 46 646 29 HOH HOH . 
D 4 HOH A 47 647 32 HOH HOH . 
D 4 HOH A 48 648 54 HOH HOH . 
D 4 HOH A 49 649 76 HOH HOH . 
D 4 HOH A 50 650 31 HOH HOH . 
D 4 HOH A 51 651 67 HOH HOH . 
D 4 HOH A 52 652 62 HOH HOH . 
D 4 HOH A 53 653 69 HOH HOH . 
D 4 HOH A 54 654 26 HOH HOH . 
D 4 HOH A 55 655 9 HOH HOH . 
D 4 HOH A 56 656 56 HOH HOH . 
D 4 HOH A 57 657 66 HOH HOH . 
D 4 HOH A 58 658 20 HOH HOH . 
D 4 HOH A 59 659 46 HOH HOH . 
D 4 HOH A 60 660 63 HOH HOH . 
D 4 HOH A 61 661 30 HOH HOH . 
D 4 HOH A 62 662 73 HOH HOH . 
D 4 HOH A 63 663 39 HOH HOH . 
D 4 HOH A 64 664 25 HOH HOH . 
D 4 HOH A 65 665 53 HOH HOH . 
D 4 HOH A 66 666 45 HOH HOH . 
D 4 HOH A 67 667 65 HOH HOH . 
D 4 HOH A 68 668 49 HOH HOH . 
D 4 HOH A 69 669 2 HOH HOH . 
D 4 HOH A 70 670 59 HOH HOH . 
D 4 HOH A 71 671 51 HOH HOH . 
D 4 HOH A 72 672 18 HOH HOH . 
D 4 HOH A 73 673 21 HOH HOH . 
D 4 HOH A 74 674 36 HOH HOH . 
D 4 HOH A 75 675 8 HOH HOH . 
D 4 HOH A 76 676 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAG A1EGT . . . B 2 -28.077 -24.836 17.441 1 70.74 ? CAG A1EGT 501 A 1 
HETATM 2 C CAE A1EGT . . . B 2 -29.093 -25.297 18.245 1 68.51 ? CAE A1EGT 501 A 1 
HETATM 3 C CAM A1EGT . . . B 2 -29.984 -26.242 17.754 1 71.22 ? CAM A1EGT 501 A 1 
HETATM 4 O OAB A1EGT . . . B 2 -30.967 -26.7 18.585 1 74.18 ? OAB A1EGT 501 A 1 
HETATM 5 C CAF A1EGT . . . B 2 -29.879 -26.687 16.44 1 67.52 ? CAF A1EGT 501 A 1 
HETATM 6 C CAH A1EGT . . . B 2 -28.878 -26.196 15.631 1 72.87 ? CAH A1EGT 501 A 1 
HETATM 7 C CAP A1EGT . . . B 2 -27.965 -25.262 16.121 1 74.42 ? CAP A1EGT 501 A 1 
HETATM 8 C CAQ A1EGT . . . B 2 -26.893 -24.721 15.28 1 71.93 ? CAQ A1EGT 501 A 1 
HETATM 9 O OAL A1EGT . . . B 2 -26.254 -23.681 15.878 1 68.7 ? OAL A1EGT 501 A 1 
HETATM 10 C CAJ A1EGT . . . B 2 -26.573 -25.148 14.043 1 65.99 ? CAJ A1EGT 501 A 1 
HETATM 11 C CAR A1EGT . . . B 2 -25.507 -24.553 13.283 1 66.29 ? CAR A1EGT 501 A 1 
HETATM 12 O OAA A1EGT . . . B 2 -25.196 -24.961 12.142 1 62.3 ? OAA A1EGT 501 A 1 
HETATM 13 C CAT A1EGT . . . B 2 -24.827 -23.43 13.938 1 64.9 ? CAT A1EGT 501 A 1 
HETATM 14 C CAS A1EGT . . . B 2 -25.242 -23.031 15.212 1 63.75 ? CAS A1EGT 501 A 1 
HETATM 15 C CAK A1EGT . . . B 2 -24.665 -21.993 15.913 1 60.44 ? CAK A1EGT 501 A 1 
HETATM 16 C CAN A1EGT . . . B 2 -23.619 -21.305 15.32 1 66 ? CAN A1EGT 501 A 1 
HETATM 17 O OAC A1EGT . . . B 2 -23.075 -20.267 16.057 1 58.77 ? OAC A1EGT 501 A 1 
HETATM 18 C CAI A1EGT . . . B 2 -23.165 -21.655 14.034 1 65.53 ? CAI A1EGT 501 A 1 
HETATM 19 C CAO A1EGT . . . B 2 -23.752 -22.703 13.353 1 66.16 ? CAO A1EGT 501 A 1 
HETATM 20 O OAD A1EGT . . . B 2 -23.302 -23.031 12.116 1 59.72 ? OAD A1EGT 501 A 1 
HETATM 21 C C2 A1EGT . . . B 2 -22.164 -18.114 16.196 1 56.25 ? C2 A1EGT 501 A 1 
HETATM 22 C C3 A1EGT . . . B 2 -21.1 -17.2 15.643 1 48.55 ? C3 A1EGT 501 A 1 
HETATM 23 C C4 A1EGT . . . B 2 -19.755 -17.876 15.753 1 51.48 ? C4 A1EGT 501 A 1 
HETATM 24 C C5 A1EGT . . . B 2 -19.783 -19.158 14.942 1 58.78 ? C5 A1EGT 501 A 1 
HETATM 25 C C6 A1EGT . . . B 2 -18.465 -19.906 14.999 1 63.1 ? C6 A1EGT 501 A 1 
HETATM 26 C C1 A1EGT . . . B 2 -22.113 -19.433 15.438 1 61.6 ? C1 A1EGT 501 A 1 
HETATM 27 O O2 A1EGT . . . B 2 -23.471 -17.55 16.09 1 60.05 ? O2 A1EGT 501 A 1 
HETATM 28 O O3 A1EGT . . . B 2 -21.089 -15.95 16.325 1 51.13 ? O3 A1EGT 501 A 1 
HETATM 29 O O4 A1EGT . . . B 2 -18.735 -17.036 15.222 1 60.39 ? O4 A1EGT 501 A 1 
HETATM 30 O O5 A1EGT . . . B 2 -20.823 -20.029 15.466 1 60.6 ? O5 A1EGT 501 A 1 
HETATM 31 O O6 A1EGT . . . B 2 -17.438 -19.179 15.719 1 56.21 ? O6 A1EGT 501 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#