data_9KT0 # _model_server_result.job_id Jzrk1i_RQYDC4sJw7nvygQ _model_server_result.datetime_utc '2025-08-24 14:50:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9kt0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 9KT0 # _exptl.entry_id 9KT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.378 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Genistin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9KT0 _cell.length_a 75.23 _cell.length_b 75.23 _cell.length_c 161.624 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 O10' _chem_comp.formula_weight 432.378 _chem_comp.id A1EGY _chem_comp.mon_nstd_flag . _chem_comp.name Genistin _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Genistein 7-O-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 C20 A1EGY sing 1 n n O1A C1A A1EGY doub 2 n n O6 C6 A1EGY sing 3 n n C7 C8 A1EGY doub 4 n y C7 C6A A1EGY sing 5 n y O2A C6A A1EGY sing 6 n n C20 C19 A1EGY doub 7 n y C20 C21 A1EGY sing 8 n y C8 C3A A1EGY sing 9 n y C6A C5A A1EGY doub 10 n y C1A C21 A1EGY sing 11 n n C1A C2A A1EGY sing 12 n n C19 C12 A1EGY sing 13 n y C6 C5 A1EGY sing 14 n n C21 C10 A1EGY doub 15 n y C3A C2A A1EGY sing 16 n n C3A C4A A1EGY doub 17 n y C5 O5 A1EGY sing 18 n n C5 C4 A1EGY sing 19 n n C5A C4A A1EGY sing 20 n y C2A C9 A1EGY doub 21 n n O4 C4 A1EGY sing 22 n n O5 C1 A1EGY sing 23 n n C1 O4A A1EGY sing 24 n n C1 C2 A1EGY sing 25 n n C3 C4 A1EGY sing 26 n n C3 O3 A1EGY sing 27 n n C3 C2 A1EGY sing 28 n n C12 O4A A1EGY sing 29 n n C12 C11 A1EGY doub 30 n y C10 C11 A1EGY sing 31 n y C10 O3A A1EGY sing 32 n n C9 O3A A1EGY sing 33 n n C2 O2 A1EGY sing 34 n n O2A H1A A1EGY sing 35 n n C4A H2A A1EGY sing 36 n n C5A H3A A1EGY sing 37 n n O10 H4A A1EGY sing 38 n n C11 H5A A1EGY sing 39 n n C1 H1 A1EGY sing 40 n n C5 H5 A1EGY sing 41 n n C6 H61 A1EGY sing 42 n n C6 H62 A1EGY sing 43 n n C4 H4 A1EGY sing 44 n n C3 H3 A1EGY sing 45 n n C2 H2 A1EGY sing 46 n n C19 H13 A1EGY sing 47 n n C7 H14 A1EGY sing 48 n n C8 H15 A1EGY sing 49 n n C9 H16 A1EGY sing 50 n n O6 HO6 A1EGY sing 51 n n O4 HO4 A1EGY sing 52 n n O3 HO3 A1EGY sing 53 n n O2 HO2 A1EGY sing 54 n n # _atom_sites.entry_id 9KT0 _atom_sites.fract_transf_matrix[1][1] 0.013293 _atom_sites.fract_transf_matrix[1][2] 0.007674 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1EGY A 1 501 501 A1EGY G7G . C 3 UDP A 1 502 502 UDP UDP . D 4 HOH A 1 601 10 HOH HOH . D 4 HOH A 2 602 8 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 11 HOH HOH . D 4 HOH A 5 605 4 HOH HOH . D 4 HOH A 6 606 7 HOH HOH . D 4 HOH A 7 607 15 HOH HOH . D 4 HOH A 8 608 9 HOH HOH . D 4 HOH A 9 609 6 HOH HOH . D 4 HOH A 10 610 5 HOH HOH . D 4 HOH A 11 611 2 HOH HOH . D 4 HOH A 12 612 1 HOH HOH . D 4 HOH A 13 613 12 HOH HOH . D 4 HOH A 14 614 16 HOH HOH . D 4 HOH A 15 615 14 HOH HOH . D 4 HOH A 16 616 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 A1EGY . . . B 2 31.35 -10.956 -10.658 1 65.67 ? C11 A1EGY 501 A 1 HETATM 2 C C12 A1EGY . . . B 2 30.348 -10.386 -11.419 1 65.89 ? C12 A1EGY 501 A 1 HETATM 3 O O4A A1EGY . . . B 2 29.096 -10.44 -10.833 1 60.06 ? O4A A1EGY 501 A 1 HETATM 4 C C19 A1EGY . . . B 2 30.633 -9.85 -12.686 1 74.25 ? C19 A1EGY 501 A 1 HETATM 5 C C20 A1EGY . . . B 2 31.92 -9.883 -13.176 1 72.34 ? C20 A1EGY 501 A 1 HETATM 6 O O10 A1EGY . . . B 2 32.185 -9.361 -14.393 1 78.68 ? O10 A1EGY 501 A 1 HETATM 7 C C21 A1EGY . . . B 2 32.973 -10.46 -12.416 1 76.45 ? C21 A1EGY 501 A 1 HETATM 8 C C1A A1EGY . . . B 2 34.348 -10.51 -12.896 1 77.41 ? C1A A1EGY 501 A 1 HETATM 9 O O1A A1EGY . . . B 2 34.67 -10.053 -14.01 1 75.99 ? O1A A1EGY 501 A 1 HETATM 10 C C2A A1EGY . . . B 2 35.307 -11.144 -11.967 1 83.3 ? C2A A1EGY 501 A 1 HETATM 11 C C9 A1EGY . . . B 2 34.853 -11.616 -10.792 1 79.54 ? C9 A1EGY 501 A 1 HETATM 12 O O3A A1EGY . . . B 2 33.577 -11.558 -10.348 1 73.86 ? O3A A1EGY 501 A 1 HETATM 13 C C10 A1EGY . . . B 2 32.636 -10.978 -11.162 1 72.68 ? C10 A1EGY 501 A 1 HETATM 14 C C3A A1EGY . . . B 2 36.742 -11.329 -12.307 1 82 ? C3A A1EGY 501 A 1 HETATM 15 C C4A A1EGY . . . B 2 37.426 -12.436 -11.815 1 84.78 ? C4A A1EGY 501 A 1 HETATM 16 C C5A A1EGY . . . B 2 38.754 -12.669 -12.119 1 86.21 ? C5A A1EGY 501 A 1 HETATM 17 C C6A A1EGY . . . B 2 39.434 -11.784 -12.942 1 88.33 ? C6A A1EGY 501 A 1 HETATM 18 O O2A A1EGY . . . B 2 40.745 -12.019 -13.235 1 93.81 ? O2A A1EGY 501 A 1 HETATM 19 C C7 A1EGY . . . B 2 38.771 -10.677 -13.454 1 87.52 ? C7 A1EGY 501 A 1 HETATM 20 C C8 A1EGY . . . B 2 37.44 -10.461 -13.14 1 86.36 ? C8 A1EGY 501 A 1 HETATM 21 C C2 A1EGY . . . B 2 26.731 -10.482 -10.784 1 58.81 ? C2 A1EGY 501 A 1 HETATM 22 C C3 A1EGY . . . B 2 25.505 -9.87 -11.455 1 62.17 ? C3 A1EGY 501 A 1 HETATM 23 C C4 A1EGY . . . B 2 25.65 -8.362 -11.382 1 61.16 ? C4 A1EGY 501 A 1 HETATM 24 C C5 A1EGY . . . B 2 26.823 -8.042 -12.282 1 69.69 ? C5 A1EGY 501 A 1 HETATM 25 C C6 A1EGY . . . B 2 27.048 -6.559 -12.474 1 73.89 ? C6 A1EGY 501 A 1 HETATM 26 C C1 A1EGY . . . B 2 27.964 -10.011 -11.549 1 64.9 ? C1 A1EGY 501 A 1 HETATM 27 O O2 A1EGY . . . B 2 26.698 -11.905 -10.774 1 55.67 ? O2 A1EGY 501 A 1 HETATM 28 O O3 A1EGY . . . B 2 24.285 -10.336 -10.884 1 55.04 ? O3 A1EGY 501 A 1 HETATM 29 O O4 A1EGY . . . B 2 24.496 -7.667 -11.85 1 65.12 ? O4 A1EGY 501 A 1 HETATM 30 O O5 A1EGY . . . B 2 28.011 -8.599 -11.664 1 70.32 ? O5 A1EGY 501 A 1 HETATM 31 O O6 A1EGY . . . B 2 28.034 -6.313 -13.47 1 63.28 ? O6 A1EGY 501 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 1040 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #