data_9KTM
#
_model_server_result.job_id            3kxuCDb9bDVlTbN-betE6w 
_model_server_result.datetime_utc      '2025-07-27 10:39:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ktm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    9KTM 
#
_exptl.entry_id    9KTM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              566.728 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9KTM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9KTM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C28 H57 N O8 P 1' 
_chem_comp.formula_weight    566.728 
_chem_comp.id                P1O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 P1O sing 222 n n 
O1 H1P P1O sing 223 n n 
O2 P1 P1O doub 224 n n 
P1 O3 P1O sing 225 n n 
P1 O4 P1O sing 226 n n 
O3 C1 P1O sing 227 n n 
C1 C2 P1O sing 228 n n 
C1 H1 P1O sing 229 n n 
C1 H2 P1O sing 230 n n 
C2 N1 P1O sing 231 n n 
C2 H3 P1O sing 232 n n 
C2 H4 P1O sing 233 n n 
N1 C3 P1O sing 234 n n 
N1 C4 P1O sing 235 n n 
N1 C5 P1O sing 236 n n 
C3 H5 P1O sing 237 n n 
C3 H6 P1O sing 238 n n 
C3 H7 P1O sing 239 n n 
C4 H8 P1O sing 240 n n 
C4 H9 P1O sing 241 n n 
C4 H10 P1O sing 242 n n 
C5 H11 P1O sing 243 n n 
C5 H12 P1O sing 244 n n 
C5 H13 P1O sing 245 n n 
O4 C6 P1O sing 246 n n 
C6 C7 P1O sing 247 n n 
C6 H14 P1O sing 248 n n 
C6 H15 P1O sing 249 n n 
C7 C8 P1O sing 250 n n 
C7 O7 P1O sing 251 n n 
C7 H16 P1O sing 252 n n 
C8 O5 P1O sing 253 n n 
C8 H17 P1O sing 254 n n 
C8 H18 P1O sing 255 n n 
O5 C9 P1O sing 256 n n 
C9 O6 P1O doub 257 n n 
C9 C10 P1O sing 258 n n 
C10 C11 P1O sing 259 n n 
C10 H19 P1O sing 260 n n 
C10 H20 P1O sing 261 n n 
C11 C12 P1O sing 262 n n 
C11 H21 P1O sing 263 n n 
C11 H22 P1O sing 264 n n 
C12 C13 P1O sing 265 n n 
C12 H23 P1O sing 266 n n 
C12 H24 P1O sing 267 n n 
C13 C14 P1O sing 268 n n 
C13 H25 P1O sing 269 n n 
C13 H26 P1O sing 270 n n 
C14 C15 P1O sing 271 n n 
C14 H27 P1O sing 272 n n 
C14 H28 P1O sing 273 n n 
C15 C16 P1O sing 274 n n 
C15 H29 P1O sing 275 n n 
C15 H30 P1O sing 276 n n 
C16 C17 P1O sing 277 n n 
C16 H31 P1O sing 278 n n 
C16 H32 P1O sing 279 n n 
C17 C18 P1O sing 280 n n 
C17 H33 P1O sing 281 n n 
C17 H34 P1O sing 282 n n 
C18 H35 P1O sing 283 n n 
C18 H36 P1O sing 284 n n 
C18 H37 P1O sing 285 n n 
O7 C19 P1O sing 286 n n 
C19 O8 P1O doub 287 n n 
C19 C20 P1O sing 288 n n 
C20 C21 P1O sing 289 n n 
C20 H38 P1O sing 290 n n 
C20 H39 P1O sing 291 n n 
C21 C22 P1O sing 292 n n 
C21 H40 P1O sing 293 n n 
C21 H41 P1O sing 294 n n 
C22 C23 P1O sing 295 n n 
C22 H42 P1O sing 296 n n 
C22 H43 P1O sing 297 n n 
C23 C24 P1O sing 298 n n 
C23 H44 P1O sing 299 n n 
C23 H45 P1O sing 300 n n 
C24 C25 P1O sing 301 n n 
C24 H46 P1O sing 302 n n 
C24 H47 P1O sing 303 n n 
C25 C26 P1O sing 304 n n 
C25 H48 P1O sing 305 n n 
C25 H49 P1O sing 306 n n 
C26 C27 P1O sing 307 n n 
C26 H50 P1O sing 308 n n 
C26 H51 P1O sing 309 n n 
C27 C28 P1O sing 310 n n 
C27 H52 P1O sing 311 n n 
C27 H53 P1O sing 312 n n 
C28 H54 P1O sing 313 n n 
C28 H55 P1O sing 314 n n 
C28 H56 P1O sing 315 n n 
#
_atom_sites.entry_id                     9KTM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 P1O G 1 301 301 P1O P1O . 
I 2 P1O A 1 301 301 P1O P1O . 
J 2 P1O B 1 301 301 P1O P1O . 
K 2 P1O C 1 301 301 P1O P1O . 
L 2 P1O D 1 301 301 P1O P1O . 
M 2 P1O E 1 301 301 P1O P1O . 
N 2 P1O F 1 301 301 P1O P1O . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 P1O . . . H 2 119.497 149.91 157.542 1 62.4 ? O1 P1O 301 G 1 
HETATM 2 O O2 P1O . . . H 2 118.543 148.003 156.051 1 62.4 ? O2 P1O 301 G 1 
HETATM 3 P P1 P1O . . . H 2 118.323 149.223 156.902 1 62.4 ? P1 P1O 301 G 1 
HETATM 4 O O3 P1O . . . H 2 117.543 150.326 156.032 1 62.4 ? O3 P1O 301 G 1 
HETATM 5 C C1 P1O . . . H 2 116.706 149.895 154.926 1 62.4 ? C1 P1O 301 G 1 
HETATM 6 C C2 P1O . . . H 2 115.72 150.978 154.56 1 62.4 ? C2 P1O 301 G 1 
HETATM 7 N N1 P1O . . . H 2 114.467 151.098 155.406 1 62.4 ? N1 P1O 301 G 1 
HETATM 8 C C3 P1O . . . H 2 113.682 149.834 155.383 1 62.4 ? C3 P1O 301 G 1 
HETATM 9 C C4 P1O . . . H 2 114.821 151.425 156.808 1 62.4 ? C4 P1O 301 G 1 
HETATM 10 C C5 P1O . . . H 2 113.623 152.194 154.868 1 62.4 ? C5 P1O 301 G 1 
HETATM 11 O O4 P1O . . . H 2 117.279 148.868 158.071 1 62.4 ? O4 P1O 301 G 1 
HETATM 12 C C6 P1O . . . H 2 116.143 148.008 157.789 1 62.4 ? C6 P1O 301 G 1 
HETATM 13 C C7 P1O . . . H 2 115.379 147.772 159.068 1 62.4 ? C7 P1O 301 G 1 
HETATM 14 C C8 P1O . . . H 2 114.194 148.691 159.248 1 62.4 ? C8 P1O 301 G 1 
HETATM 15 O O5 P1O . . . H 2 114.457 149.548 160.378 1 62.4 ? O5 P1O 301 G 1 
HETATM 16 C C9 P1O . . . H 2 115.041 150.709 160.108 1 62.4 ? C9 P1O 301 G 1 
HETATM 17 O O6 P1O . . . H 2 116.225 150.831 159.94 1 62.4 ? O6 P1O 301 G 1 
HETATM 18 C C10 P1O . . . H 2 114.04 151.822 160.045 1 62.4 ? C10 P1O 301 G 1 
HETATM 19 C C11 P1O . . . H 2 113.504 152.209 161.385 1 62.4 ? C11 P1O 301 G 1 
HETATM 20 C C12 P1O . . . H 2 113.623 153.697 161.659 1 62.4 ? C12 P1O 301 G 1 
HETATM 21 C C13 P1O . . . H 2 112.345 154.473 161.45 1 62.4 ? C13 P1O 301 G 1 
HETATM 22 O O7 P1O . . . H 2 114.897 146.403 159.09 1 62.4 ? O7 P1O 301 G 1 
HETATM 23 C C19 P1O . . . H 2 115.265 145.632 160.122 1 62.4 ? C19 P1O 301 G 1 
HETATM 24 O O8 P1O . . . H 2 116.124 144.798 160.02 1 62.4 ? O8 P1O 301 G 1 
HETATM 25 C C20 P1O . . . H 2 114.502 145.916 161.382 1 62.4 ? C20 P1O 301 G 1 
HETATM 26 C C21 P1O . . . H 2 113.141 145.308 161.396 1 62.4 ? C21 P1O 301 G 1 
HETATM 27 C C22 P1O . . . H 2 113.14 143.901 161.959 1 62.4 ? C22 P1O 301 G 1 
HETATM 28 C C23 P1O . . . H 2 113.189 142.825 160.913 1 62.4 ? C23 P1O 301 G 1 
HETATM 29 C C24 P1O . . . H 2 113.435 141.446 161.461 1 62.4 ? C24 P1O 301 G 1 
HETATM 30 C C25 P1O . . . H 2 112.244 140.839 162.15 1 62.4 ? C25 P1O 301 G 1 
HETATM 31 C C26 P1O . . . H 2 111.49 139.853 161.304 1 62.4 ? C26 P1O 301 G 1 
HETATM 32 C C27 P1O . . . H 2 110.805 140.475 160.124 1 62.4 ? C27 P1O 301 G 1 
HETATM 33 C C28 P1O . . . H 2 109.608 139.693 159.66 1 62.4 ? C28 P1O 301 G 1 
HETATM 34 H H1 P1O . . . H 2 116.221 149.075 155.174 1 62.4 ? H1 P1O 301 G 1 
HETATM 35 H H2 P1O . . . H 2 117.27 149.691 154.144 1 62.4 ? H2 P1O 301 G 1 
HETATM 36 H H3 P1O . . . H 2 115.442 150.835 153.635 1 62.4 ? H3 P1O 301 G 1 
HETATM 37 H H4 P1O . . . H 2 116.185 151.835 154.594 1 62.4 ? H4 P1O 301 G 1 
HETATM 38 H H5 P1O . . . H 2 112.747 150.043 155.253 1 62.4 ? H5 P1O 301 G 1 
HETATM 39 H H6 P1O . . . H 2 113.802 149.373 156.226 1 62.4 ? H6 P1O 301 G 1 
HETATM 40 H H7 P1O . . . H 2 113.998 149.277 154.658 1 62.4 ? H7 P1O 301 G 1 
HETATM 41 H H8 P1O . . . H 2 115.482 152.132 156.814 1 62.4 ? H8 P1O 301 G 1 
HETATM 42 H H9 P1O . . . H 2 114.023 151.715 157.272 1 62.4 ? H9 P1O 301 G 1 
HETATM 43 H H10 P1O . . . H 2 115.179 150.636 157.238 1 62.4 ? H10 P1O 301 G 1 
HETATM 44 H H11 P1O . . . H 2 113.535 152.082 153.911 1 62.4 ? H11 P1O 301 G 1 
HETATM 45 H H12 P1O . . . H 2 114.047 153.044 155.061 1 62.4 ? H12 P1O 301 G 1 
HETATM 46 H H13 P1O . . . H 2 112.75 152.159 155.287 1 62.4 ? H13 P1O 301 G 1 
HETATM 47 H H14 P1O . . . H 2 116.451 147.153 157.427 1 62.4 ? H14 P1O 301 G 1 
HETATM 48 H H15 P1O . . . H 2 115.56 148.433 157.129 1 62.4 ? H15 P1O 301 G 1 
HETATM 49 H H16 P1O . . . H 2 115.997 147.908 159.83 1 62.4 ? H16 P1O 301 G 1 
HETATM 50 H H17 P1O . . . H 2 113.377 148.168 159.414 1 62.4 ? H17 P1O 301 G 1 
HETATM 51 H H18 P1O . . . H 2 114.058 149.24 158.443 1 62.4 ? H18 P1O 301 G 1 
HETATM 52 H H19 P1O . . . H 2 113.296 151.547 159.469 1 62.4 ? H19 P1O 301 G 1 
HETATM 53 H H20 P1O . . . H 2 114.46 152.605 159.632 1 62.4 ? H20 P1O 301 G 1 
HETATM 54 H H21 P1O . . . H 2 113.99 151.719 162.079 1 62.4 ? H21 P1O 301 G 1 
HETATM 55 H H22 P1O . . . H 2 112.559 151.95 161.442 1 62.4 ? H22 P1O 301 G 1 
HETATM 56 H H23 P1O . . . H 2 113.918 153.823 162.586 1 62.4 ? H23 P1O 301 G 1 
HETATM 57 H H24 P1O . . . H 2 114.316 154.07 161.074 1 62.4 ? H24 P1O 301 G 1 
HETATM 58 H H25 P1O . . . H 2 111.804 154.01 160.775 1 62.4 ? H25 P1O 301 G 1 
HETATM 59 H H26 P1O . . . H 2 111.838 154.475 162.288 1 62.4 ? H26 P1O 301 G 1 
HETATM 60 H H38 P1O . . . H 2 114.416 146.886 161.495 1 62.4 ? H38 P1O 301 G 1 
HETATM 61 H H39 P1O . . . H 2 115.01 145.574 162.146 1 62.4 ? H39 P1O 301 G 1 
HETATM 62 H H40 P1O . . . H 2 112.789 145.282 160.483 1 62.4 ? H40 P1O 301 G 1 
HETATM 63 H H41 P1O . . . H 2 112.54 145.865 161.933 1 62.4 ? H41 P1O 301 G 1 
HETATM 64 H H42 P1O . . . H 2 112.33 143.777 162.497 1 62.4 ? H42 P1O 301 G 1 
HETATM 65 H H43 P1O . . . H 2 113.911 143.795 162.553 1 62.4 ? H43 P1O 301 G 1 
HETATM 66 H H44 P1O . . . H 2 113.899 143.041 160.273 1 62.4 ? H44 P1O 301 G 1 
HETATM 67 H H45 P1O . . . H 2 112.34 142.824 160.424 1 62.4 ? H45 P1O 301 G 1 
HETATM 68 H H46 P1O . . . H 2 114.178 141.491 162.098 1 62.4 ? H46 P1O 301 G 1 
HETATM 69 H H47 P1O . . . H 2 113.706 140.858 160.725 1 62.4 ? H47 P1O 301 G 1 
HETATM 70 H H48 P1O . . . H 2 112.547 140.386 162.965 1 62.4 ? H48 P1O 301 G 1 
HETATM 71 H H49 P1O . . . H 2 111.632 141.555 162.415 1 62.4 ? H49 P1O 301 G 1 
HETATM 72 H H50 P1O . . . H 2 110.817 139.408 161.86 1 62.4 ? H50 P1O 301 G 1 
HETATM 73 H H51 P1O . . . H 2 112.114 139.17 160.982 1 62.4 ? H51 P1O 301 G 1 
HETATM 74 H H52 P1O . . . H 2 111.448 140.547 159.385 1 62.4 ? H52 P1O 301 G 1 
HETATM 75 H H53 P1O . . . H 2 110.521 141.382 160.366 1 62.4 ? H53 P1O 301 G 1 
HETATM 76 H H54 P1O . . . H 2 108.887 139.794 160.303 1 62.4 ? H54 P1O 301 G 1 
HETATM 77 H H55 P1O . . . H 2 109.845 138.753 159.585 1 62.4 ? H55 P1O 301 G 1 
HETATM 78 H H56 P1O . . . H 2 109.319 140.024 158.793 1 62.4 ? H56 P1O 301 G 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           78 
#