data_9KTM # _model_server_result.job_id xv49PVC8YghMQbPG0F-8xA _model_server_result.datetime_utc '2025-07-26 01:02:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ktm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 9KTM # _exptl.entry_id 9KTM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 566.728 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9KTM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C28 H57 N O8 P 1' _chem_comp.formula_weight 566.728 _chem_comp.id P1O _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 P1O sing 222 n n O1 H1P P1O sing 223 n n O2 P1 P1O doub 224 n n P1 O3 P1O sing 225 n n P1 O4 P1O sing 226 n n O3 C1 P1O sing 227 n n C1 C2 P1O sing 228 n n C1 H1 P1O sing 229 n n C1 H2 P1O sing 230 n n C2 N1 P1O sing 231 n n C2 H3 P1O sing 232 n n C2 H4 P1O sing 233 n n N1 C3 P1O sing 234 n n N1 C4 P1O sing 235 n n N1 C5 P1O sing 236 n n C3 H5 P1O sing 237 n n C3 H6 P1O sing 238 n n C3 H7 P1O sing 239 n n C4 H8 P1O sing 240 n n C4 H9 P1O sing 241 n n C4 H10 P1O sing 242 n n C5 H11 P1O sing 243 n n C5 H12 P1O sing 244 n n C5 H13 P1O sing 245 n n O4 C6 P1O sing 246 n n C6 C7 P1O sing 247 n n C6 H14 P1O sing 248 n n C6 H15 P1O sing 249 n n C7 C8 P1O sing 250 n n C7 O7 P1O sing 251 n n C7 H16 P1O sing 252 n n C8 O5 P1O sing 253 n n C8 H17 P1O sing 254 n n C8 H18 P1O sing 255 n n O5 C9 P1O sing 256 n n C9 O6 P1O doub 257 n n C9 C10 P1O sing 258 n n C10 C11 P1O sing 259 n n C10 H19 P1O sing 260 n n C10 H20 P1O sing 261 n n C11 C12 P1O sing 262 n n C11 H21 P1O sing 263 n n C11 H22 P1O sing 264 n n C12 C13 P1O sing 265 n n C12 H23 P1O sing 266 n n C12 H24 P1O sing 267 n n C13 C14 P1O sing 268 n n C13 H25 P1O sing 269 n n C13 H26 P1O sing 270 n n C14 C15 P1O sing 271 n n C14 H27 P1O sing 272 n n C14 H28 P1O sing 273 n n C15 C16 P1O sing 274 n n C15 H29 P1O sing 275 n n C15 H30 P1O sing 276 n n C16 C17 P1O sing 277 n n C16 H31 P1O sing 278 n n C16 H32 P1O sing 279 n n C17 C18 P1O sing 280 n n C17 H33 P1O sing 281 n n C17 H34 P1O sing 282 n n C18 H35 P1O sing 283 n n C18 H36 P1O sing 284 n n C18 H37 P1O sing 285 n n O7 C19 P1O sing 286 n n C19 O8 P1O doub 287 n n C19 C20 P1O sing 288 n n C20 C21 P1O sing 289 n n C20 H38 P1O sing 290 n n C20 H39 P1O sing 291 n n C21 C22 P1O sing 292 n n C21 H40 P1O sing 293 n n C21 H41 P1O sing 294 n n C22 C23 P1O sing 295 n n C22 H42 P1O sing 296 n n C22 H43 P1O sing 297 n n C23 C24 P1O sing 298 n n C23 H44 P1O sing 299 n n C23 H45 P1O sing 300 n n C24 C25 P1O sing 301 n n C24 H46 P1O sing 302 n n C24 H47 P1O sing 303 n n C25 C26 P1O sing 304 n n C25 H48 P1O sing 305 n n C25 H49 P1O sing 306 n n C26 C27 P1O sing 307 n n C26 H50 P1O sing 308 n n C26 H51 P1O sing 309 n n C27 C28 P1O sing 310 n n C27 H52 P1O sing 311 n n C27 H53 P1O sing 312 n n C28 H54 P1O sing 313 n n C28 H55 P1O sing 314 n n C28 H56 P1O sing 315 n n # _atom_sites.entry_id 9KTM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 P1O G 1 301 301 P1O P1O . I 2 P1O A 1 301 301 P1O P1O . J 2 P1O B 1 301 301 P1O P1O . K 2 P1O C 1 301 301 P1O P1O . L 2 P1O D 1 301 301 P1O P1O . M 2 P1O E 1 301 301 P1O P1O . N 2 P1O F 1 301 301 P1O P1O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P1O . . . J 2 151.473 133.186 157.53 1 42.17 ? O1 P1O 301 B 1 HETATM 2 O O2 P1O . . . J 2 149.825 134.541 156.04 1 42.17 ? O2 P1O 301 B 1 HETATM 3 P P1 P1O . . . J 2 151.064 134.483 156.891 1 42.17 ? P1 P1O 301 B 1 HETATM 4 O O3 P1O . . . J 2 152.312 134.997 156.019 1 42.17 ? O3 P1O 301 B 1 HETATM 5 C C1 P1O . . . J 2 152.079 135.91 154.914 1 42.17 ? C1 P1O 301 B 1 HETATM 6 C C2 P1O . . . J 2 153.353 136.63 154.547 1 42.17 ? C2 P1O 301 B 1 HETATM 7 N N1 P1O . . . J 2 153.75 137.824 155.393 1 42.17 ? N1 P1O 301 B 1 HETATM 8 C C3 P1O . . . J 2 152.693 138.871 155.371 1 42.17 ? C3 P1O 301 B 1 HETATM 9 C C4 P1O . . . J 2 153.991 137.406 156.795 1 42.17 ? C4 P1O 301 B 1 HETATM 10 C C5 P1O . . . J 2 155.006 138.402 154.855 1 42.17 ? C5 P1O 301 B 1 HETATM 11 O O4 P1O . . . J 2 150.951 135.579 158.06 1 42.17 ? O4 P1O 301 B 1 HETATM 12 C C6 P1O . . . J 2 150.366 136.879 157.779 1 42.17 ? C6 P1O 301 B 1 HETATM 13 C C7 P1O . . . J 2 150.307 137.676 159.058 1 42.17 ? C7 P1O 301 B 1 HETATM 14 C C8 P1O . . . J 2 151.468 138.626 159.237 1 42.17 ? C8 P1O 301 B 1 HETATM 15 O O5 P1O . . . J 2 152.245 138.179 160.367 1 42.17 ? O5 P1O 301 B 1 HETATM 16 C C9 P1O . . . J 2 153.246 137.351 160.096 1 42.17 ? C9 P1O 301 B 1 HETATM 17 O O6 P1O . . . J 2 153.102 136.169 159.927 1 42.17 ? O6 P1O 301 B 1 HETATM 18 C C10 P1O . . . J 2 154.554 138.078 160.031 1 42.17 ? C10 P1O 301 B 1 HETATM 19 C C11 P1O . . . J 2 155.053 138.514 161.371 1 42.17 ? C11 P1O 301 B 1 HETATM 20 C C12 P1O . . . J 2 156.476 138.066 161.644 1 42.17 ? C12 P1O 301 B 1 HETATM 21 C C13 P1O . . . J 2 157.518 139.139 161.434 1 42.17 ? C13 P1O 301 B 1 HETATM 22 O O7 P1O . . . J 2 149.08 138.451 159.08 1 42.17 ? O7 P1O 301 B 1 HETATM 23 C C19 P1O . . . J 2 148.247 138.264 160.113 1 42.17 ? C19 P1O 301 B 1 HETATM 24 O O8 P1O . . . J 2 147.243 137.612 160.012 1 42.17 ? O8 P1O 301 B 1 HETATM 25 C C20 P1O . . . J 2 148.696 138.944 161.373 1 42.17 ? C20 P1O 301 B 1 HETATM 26 C C21 P1O . . . J 2 148.406 140.407 161.387 1 42.17 ? C21 P1O 301 B 1 HETATM 27 C C22 P1O . . . J 2 147.035 140.721 161.952 1 42.17 ? C22 P1O 301 B 1 HETATM 28 C C23 P1O . . . J 2 145.974 140.914 160.906 1 42.17 ? C23 P1O 301 B 1 HETATM 29 C C24 P1O . . . J 2 144.576 140.981 161.456 1 42.17 ? C24 P1O 301 B 1 HETATM 30 C C25 P1O . . . J 2 144.249 142.277 162.145 1 42.17 ? C25 P1O 301 B 1 HETATM 31 C C26 P1O . . . J 2 143.456 143.232 161.3 1 42.17 ? C26 P1O 301 B 1 HETATM 32 C C27 P1O . . . J 2 144.214 143.761 160.12 1 42.17 ? C27 P1O 301 B 1 HETATM 33 C C28 P1O . . . J 2 143.718 145.103 159.655 1 42.17 ? C28 P1O 301 B 1 HETATM 34 H H1 P1O . . . J 2 151.387 136.566 155.162 1 42.17 ? H1 P1O 301 B 1 HETATM 35 H H2 P1O . . . J 2 151.753 135.406 154.132 1 42.17 ? H2 P1O 301 B 1 HETATM 36 H H3 P1O . . . J 2 153.275 136.933 153.622 1 42.17 ? H3 P1O 301 B 1 HETATM 37 H H4 P1O . . . J 2 154.085 135.986 154.581 1 42.17 ? H4 P1O 301 B 1 HETATM 38 H H5 P1O . . . J 2 153.105 139.736 155.241 1 42.17 ? H5 P1O 301 B 1 HETATM 39 H H6 P1O . . . J 2 152.217 138.857 156.214 1 42.17 ? H6 P1O 301 B 1 HETATM 40 H H7 P1O . . . J 2 152.08 138.688 154.646 1 42.17 ? H7 P1O 301 B 1 HETATM 41 H H8 P1O . . . J 2 154.533 136.604 156.8 1 42.17 ? H8 P1O 301 B 1 HETATM 42 H H9 P1O . . . J 2 154.452 138.12 157.259 1 42.17 ? H9 P1O 301 B 1 HETATM 43 H H10 P1O . . . J 2 153.142 137.233 157.225 1 42.17 ? H10 P1O 301 B 1 HETATM 44 H H11 P1O . . . J 2 154.916 138.514 153.897 1 42.17 ? H11 P1O 301 B 1 HETATM 45 H H12 P1O . . . J 2 155.74 137.8 155.046 1 42.17 ? H12 P1O 301 B 1 HETATM 46 H H13 P1O . . . J 2 155.167 139.261 155.274 1 42.17 ? H13 P1O 301 B 1 HETATM 47 H H14 P1O . . . J 2 149.464 136.77 157.417 1 42.17 ? H14 P1O 301 B 1 HETATM 48 H H15 P1O . . . J 2 150.91 137.353 157.118 1 42.17 ? H15 P1O 301 B 1 HETATM 49 H H16 P1O . . . J 2 150.303 137.043 159.82 1 42.17 ? H16 P1O 301 B 1 HETATM 50 H H17 P1O . . . J 2 151.14 139.539 159.403 1 42.17 ? H17 P1O 301 B 1 HETATM 51 H H18 P1O . . . J 2 152.032 138.637 158.432 1 42.17 ? H18 P1O 301 B 1 HETATM 52 H H19 P1O . . . J 2 154.452 138.865 159.456 1 42.17 ? H19 P1O 301 B 1 HETATM 53 H H20 P1O . . . J 2 155.224 137.495 159.618 1 42.17 ? H20 P1O 301 B 1 HETATM 54 H H21 P1O . . . J 2 154.467 138.15 162.066 1 42.17 ? H21 P1O 301 B 1 HETATM 55 H H22 P1O . . . J 2 155.01 139.492 161.429 1 42.17 ? H22 P1O 301 B 1 HETATM 56 H H23 P1O . . . J 2 156.534 137.75 162.571 1 42.17 ? H23 P1O 301 B 1 HETATM 57 H H24 P1O . . . J 2 156.685 137.308 161.059 1 42.17 ? H24 P1O 301 B 1 HETATM 58 H H25 P1O . . . J 2 157.186 139.77 160.76 1 42.17 ? H25 P1O 301 B 1 HETATM 59 H H26 P1O . . . J 2 157.634 139.632 162.273 1 42.17 ? H26 P1O 301 B 1 HETATM 60 H H38 P1O . . . J 2 149.66 138.811 161.486 1 42.17 ? H38 P1O 301 B 1 HETATM 61 H H39 P1O . . . J 2 148.249 138.525 162.137 1 42.17 ? H39 P1O 301 B 1 HETATM 62 H H40 P1O . . . J 2 148.458 140.756 160.475 1 42.17 ? H40 P1O 301 B 1 HETATM 63 H H41 P1O . . . J 2 149.083 140.868 161.924 1 42.17 ? H41 P1O 301 B 1 HETATM 64 H H42 P1O . . . J 2 147.095 141.538 162.49 1 42.17 ? H42 P1O 301 B 1 HETATM 65 H H43 P1O . . . J 2 146.76 139.993 162.545 1 42.17 ? H43 P1O 301 B 1 HETATM 66 H H44 P1O . . . J 2 146.026 140.173 160.266 1 42.17 ? H44 P1O 301 B 1 HETATM 67 H H45 P1O . . . J 2 146.162 141.742 160.417 1 42.17 ? H45 P1O 301 B 1 HETATM 68 H H46 P1O . . . J 2 144.454 140.246 162.092 1 42.17 ? H46 P1O 301 B 1 HETATM 69 H H47 P1O . . . J 2 143.942 140.848 160.72 1 42.17 ? H47 P1O 301 B 1 HETATM 70 H H48 P1O . . . J 2 143.742 142.083 162.96 1 42.17 ? H48 P1O 301 B 1 HETATM 71 H H49 P1O . . . J 2 145.085 142.714 162.41 1 42.17 ? H49 P1O 301 B 1 HETATM 72 H H50 P1O . . . J 2 143.173 143.987 161.856 1 42.17 ? H50 P1O 301 B 1 HETATM 73 H H51 P1O . . . J 2 142.651 142.776 160.978 1 42.17 ? H51 P1O 301 B 1 HETATM 74 H H52 P1O . . . J 2 144.141 143.119 159.381 1 42.17 ? H52 P1O 301 B 1 HETATM 75 H H53 P1O . . . J 2 145.162 143.836 160.36 1 42.17 ? H53 P1O 301 B 1 HETATM 76 H H54 P1O . . . J 2 143.979 145.783 160.299 1 42.17 ? H54 P1O 301 B 1 HETATM 77 H H55 P1O . . . J 2 142.749 145.081 159.581 1 42.17 ? H55 P1O 301 B 1 HETATM 78 H H56 P1O . . . J 2 144.105 145.311 158.788 1 42.17 ? H56 P1O 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 78 #