data_9KTM
#
_model_server_result.job_id            ezKxkOBVi44l6-7x2ZIXnw 
_model_server_result.datetime_utc      '2025-07-26 00:58:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ktm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    9KTM 
#
_exptl.entry_id    9KTM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              566.728 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9KTM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9KTM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C28 H57 N O8 P 1' 
_chem_comp.formula_weight    566.728 
_chem_comp.id                P1O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 P1O sing 222 n n 
O1 H1P P1O sing 223 n n 
O2 P1 P1O doub 224 n n 
P1 O3 P1O sing 225 n n 
P1 O4 P1O sing 226 n n 
O3 C1 P1O sing 227 n n 
C1 C2 P1O sing 228 n n 
C1 H1 P1O sing 229 n n 
C1 H2 P1O sing 230 n n 
C2 N1 P1O sing 231 n n 
C2 H3 P1O sing 232 n n 
C2 H4 P1O sing 233 n n 
N1 C3 P1O sing 234 n n 
N1 C4 P1O sing 235 n n 
N1 C5 P1O sing 236 n n 
C3 H5 P1O sing 237 n n 
C3 H6 P1O sing 238 n n 
C3 H7 P1O sing 239 n n 
C4 H8 P1O sing 240 n n 
C4 H9 P1O sing 241 n n 
C4 H10 P1O sing 242 n n 
C5 H11 P1O sing 243 n n 
C5 H12 P1O sing 244 n n 
C5 H13 P1O sing 245 n n 
O4 C6 P1O sing 246 n n 
C6 C7 P1O sing 247 n n 
C6 H14 P1O sing 248 n n 
C6 H15 P1O sing 249 n n 
C7 C8 P1O sing 250 n n 
C7 O7 P1O sing 251 n n 
C7 H16 P1O sing 252 n n 
C8 O5 P1O sing 253 n n 
C8 H17 P1O sing 254 n n 
C8 H18 P1O sing 255 n n 
O5 C9 P1O sing 256 n n 
C9 O6 P1O doub 257 n n 
C9 C10 P1O sing 258 n n 
C10 C11 P1O sing 259 n n 
C10 H19 P1O sing 260 n n 
C10 H20 P1O sing 261 n n 
C11 C12 P1O sing 262 n n 
C11 H21 P1O sing 263 n n 
C11 H22 P1O sing 264 n n 
C12 C13 P1O sing 265 n n 
C12 H23 P1O sing 266 n n 
C12 H24 P1O sing 267 n n 
C13 C14 P1O sing 268 n n 
C13 H25 P1O sing 269 n n 
C13 H26 P1O sing 270 n n 
C14 C15 P1O sing 271 n n 
C14 H27 P1O sing 272 n n 
C14 H28 P1O sing 273 n n 
C15 C16 P1O sing 274 n n 
C15 H29 P1O sing 275 n n 
C15 H30 P1O sing 276 n n 
C16 C17 P1O sing 277 n n 
C16 H31 P1O sing 278 n n 
C16 H32 P1O sing 279 n n 
C17 C18 P1O sing 280 n n 
C17 H33 P1O sing 281 n n 
C17 H34 P1O sing 282 n n 
C18 H35 P1O sing 283 n n 
C18 H36 P1O sing 284 n n 
C18 H37 P1O sing 285 n n 
O7 C19 P1O sing 286 n n 
C19 O8 P1O doub 287 n n 
C19 C20 P1O sing 288 n n 
C20 C21 P1O sing 289 n n 
C20 H38 P1O sing 290 n n 
C20 H39 P1O sing 291 n n 
C21 C22 P1O sing 292 n n 
C21 H40 P1O sing 293 n n 
C21 H41 P1O sing 294 n n 
C22 C23 P1O sing 295 n n 
C22 H42 P1O sing 296 n n 
C22 H43 P1O sing 297 n n 
C23 C24 P1O sing 298 n n 
C23 H44 P1O sing 299 n n 
C23 H45 P1O sing 300 n n 
C24 C25 P1O sing 301 n n 
C24 H46 P1O sing 302 n n 
C24 H47 P1O sing 303 n n 
C25 C26 P1O sing 304 n n 
C25 H48 P1O sing 305 n n 
C25 H49 P1O sing 306 n n 
C26 C27 P1O sing 307 n n 
C26 H50 P1O sing 308 n n 
C26 H51 P1O sing 309 n n 
C27 C28 P1O sing 310 n n 
C27 H52 P1O sing 311 n n 
C27 H53 P1O sing 312 n n 
C28 H54 P1O sing 313 n n 
C28 H55 P1O sing 314 n n 
C28 H56 P1O sing 315 n n 
#
_atom_sites.entry_id                     9KTM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 P1O G 1 301 301 P1O P1O . 
I 2 P1O A 1 301 301 P1O P1O . 
J 2 P1O B 1 301 301 P1O P1O . 
K 2 P1O C 1 301 301 P1O P1O . 
L 2 P1O D 1 301 301 P1O P1O . 
M 2 P1O E 1 301 301 P1O P1O . 
N 2 P1O F 1 301 301 P1O P1O . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 P1O . . . M 2 110.28 115.019 157.552 1 52.46 ? O1 P1O 301 E 1 
HETATM 2 O O2 P1O . . . M 2 112.352 114.514 156.061 1 52.46 ? O2 P1O 301 E 1 
HETATM 3 P P1 P1O . . . M 2 111.211 114.027 156.912 1 52.46 ? P1 P1O 301 E 1 
HETATM 4 O O3 P1O . . . M 2 110.31 113.023 156.04 1 52.46 ? O3 P1O 301 E 1 
HETATM 5 C C1 P1O . . . M 2 110.916 112.303 154.934 1 52.46 ? C1 P1O 301 E 1 
HETATM 6 C C2 P1O . . . M 2 110.079 111.101 154.567 1 52.46 ? C2 P1O 301 E 1 
HETATM 7 N N1 P1O . . . M 2 110.24 109.852 155.412 1 52.46 ? N1 P1O 301 E 1 
HETATM 8 C C3 P1O . . . M 2 111.647 109.368 155.389 1 52.46 ? C3 P1O 301 E 1 
HETATM 9 C C4 P1O . . . M 2 109.843 110.124 156.814 1 52.46 ? C4 P1O 301 E 1 
HETATM 10 C C5 P1O . . . M 2 109.36 108.787 154.873 1 52.46 ? C5 P1O 301 E 1 
HETATM 11 O O4 P1O . . . M 2 111.789 113.088 158.08 1 52.46 ? O4 P1O 301 E 1 
HETATM 12 C C6 P1O . . . M 2 112.88 112.171 157.798 1 52.46 ? C6 P1O 301 E 1 
HETATM 13 C C7 P1O . . . M 2 113.28 111.478 159.076 1 52.46 ? C7 P1O 301 E 1 
HETATM 14 C C8 P1O . . . M 2 112.647 110.118 159.254 1 52.46 ? C8 P1O 301 E 1 
HETATM 15 O O5 P1O . . . M 2 111.752 110.183 160.385 1 52.46 ? O5 P1O 301 E 1 
HETATM 16 C C9 P1O . . . M 2 110.491 110.495 160.115 1 52.46 ? C9 P1O 301 E 1 
HETATM 17 O O6 P1O . . . M 2 110.109 111.622 159.947 1 52.46 ? O6 P1O 301 E 1 
HETATM 18 C C10 P1O . . . M 2 109.629 109.271 160.05 1 52.46 ? C10 P1O 301 E 1 
HETATM 19 C C11 P1O . . . M 2 109.37 108.661 161.39 1 52.46 ? C11 P1O 301 E 1 
HETATM 20 C C12 P1O . . . M 2 107.893 108.447 161.663 1 52.46 ? C12 P1O 301 E 1 
HETATM 21 C C13 P1O . . . M 2 107.42 107.029 161.453 1 52.46 ? C13 P1O 301 E 1 
HETATM 22 O O7 P1O . . . M 2 114.722 111.313 159.098 1 52.46 ? O7 P1O 301 E 1 
HETATM 23 C C19 P1O . . . M 2 115.391 111.841 160.131 1 52.46 ? C19 P1O 301 E 1 
HETATM 24 O O8 P1O . . . M 2 116.013 112.865 160.03 1 52.46 ? O8 P1O 301 E 1 
HETATM 25 C C20 P1O . . . M 2 115.283 111.033 161.39 1 52.46 ? C20 P1O 301 E 1 
HETATM 26 C C21 P1O . . . M 2 116.179 109.842 161.403 1 52.46 ? C21 P1O 301 E 1 
HETATM 27 C C22 P1O . . . M 2 117.551 110.153 161.967 1 52.46 ? C22 P1O 301 E 1 
HETATM 28 C C23 P1O . . . M 2 118.589 110.44 160.921 1 52.46 ? C23 P1O 301 E 1 
HETATM 29 C C24 P1O . . . M 2 119.879 110.987 161.471 1 52.46 ? C24 P1O 301 E 1 
HETATM 30 C C25 P1O . . . M 2 120.736 109.96 162.158 1 52.46 ? C25 P1O 301 E 1 
HETATM 31 C C26 P1O . . . M 2 121.864 109.445 161.313 1 52.46 ? C26 P1O 301 E 1 
HETATM 32 C C27 P1O . . . M 2 121.41 108.64 160.132 1 52.46 ? C27 P1O 301 E 1 
HETATM 33 C C28 P1O . . . M 2 122.44 107.646 159.667 1 52.46 ? C28 P1O 301 E 1 
HETATM 34 H H1 P1O . . . M 2 111.823 112.012 155.182 1 52.46 ? H1 P1O 301 E 1 
HETATM 35 H H2 P1O . . . M 2 110.99 112.899 154.153 1 52.46 ? H2 P1O 301 E 1 
HETATM 36 H H3 P1O . . . M 2 110.281 110.863 153.642 1 52.46 ? H3 P1O 301 E 1 
HETATM 37 H H4 P1O . . . M 2 109.14 111.364 154.601 1 52.46 ? H4 P1O 301 E 1 
HETATM 38 H H5 P1O . . . M 2 111.651 108.41 155.259 1 52.46 ? H5 P1O 301 E 1 
HETATM 39 H H6 P1O . . . M 2 112.07 109.587 156.232 1 52.46 ? H6 P1O 301 E 1 
HETATM 40 H H7 P1O . . . M 2 112.12 109.8 154.664 1 52.46 ? H7 P1O 301 E 1 
HETATM 41 H H8 P1O . . . M 2 109.007 110.611 156.82 1 52.46 ? H8 P1O 301 E 1 
HETATM 42 H H9 P1O . . . M 2 109.737 109.28 157.278 1 52.46 ? H9 P1O 301 E 1 
HETATM 43 H H10 P1O . . . M 2 110.532 110.648 157.244 1 52.46 ? H10 P1O 301 E 1 
HETATM 44 H H11 P1O . . . M 2 109.489 108.726 153.916 1 52.46 ? H11 P1O 301 E 1 
HETATM 45 H H12 P1O . . . M 2 108.437 109.011 155.066 1 52.46 ? H12 P1O 301 E 1 
HETATM 46 H H13 P1O . . . M 2 109.588 107.943 155.292 1 52.46 ? H13 P1O 301 E 1 
HETATM 47 H H14 P1O . . . M 2 113.645 112.662 157.436 1 52.46 ? H14 P1O 301 E 1 
HETATM 48 H H15 P1O . . . M 2 112.595 111.509 157.137 1 52.46 ? H15 P1O 301 E 1 
HETATM 49 H H16 P1O . . . M 2 113.009 112.049 159.839 1 52.46 ? H16 P1O 301 E 1 
HETATM 50 H H17 P1O . . . M 2 113.339 109.438 159.42 1 52.46 ? H17 P1O 301 E 1 
HETATM 51 H H18 P1O . . . M 2 112.143 109.864 158.449 1 52.46 ? H18 P1O 301 E 1 
HETATM 52 H H19 P1O . . . M 2 110.062 108.607 159.474 1 52.46 ? H19 P1O 301 E 1 
HETATM 53 H H20 P1O . . . M 2 108.772 109.507 159.637 1 52.46 ? H20 P1O 301 E 1 
HETATM 54 H H21 P1O . . . M 2 109.739 109.244 162.085 1 52.46 ? H21 P1O 301 E 1 
HETATM 55 H H22 P1O . . . M 2 109.832 107.798 161.446 1 52.46 ? H22 P1O 301 E 1 
HETATM 56 H H23 P1O . . . M 2 107.704 108.706 162.59 1 52.46 ? H23 P1O 301 E 1 
HETATM 57 H H24 P1O . . . M 2 107.375 109.04 161.079 1 52.46 ? H24 P1O 301 E 1 
HETATM 58 H H25 P1O . . . M 2 107.992 106.605 160.778 1 52.46 ? H25 P1O 301 E 1 
HETATM 59 H H26 P1O . . . M 2 107.53 106.533 162.291 1 52.46 ? H26 P1O 301 E 1 
HETATM 60 H H38 P1O . . . M 2 114.357 110.734 161.503 1 52.46 ? H38 P1O 301 E 1 
HETATM 61 H H39 P1O . . . M 2 115.504 111.605 162.155 1 52.46 ? H39 P1O 301 E 1 
HETATM 62 H H40 P1O . . . M 2 116.283 109.505 160.49 1 52.46 ? H40 P1O 301 E 1 
HETATM 63 H H41 P1O . . . M 2 115.769 109.132 161.94 1 52.46 ? H41 P1O 301 E 1 
HETATM 64 H H42 P1O . . . M 2 117.851 109.391 162.505 1 52.46 ? H42 P1O 301 E 1 
HETATM 65 H H43 P1O . . . M 2 117.482 110.928 162.561 1 52.46 ? H43 P1O 301 E 1 
HETATM 66 H H44 P1O . . . M 2 118.221 111.086 160.282 1 52.46 ? H44 P1O 301 E 1 
HETATM 67 H H45 P1O . . . M 2 118.779 109.613 160.432 1 52.46 ? H45 P1O 301 E 1 
HETATM 68 H H46 P1O . . . M 2 119.67 111.701 162.108 1 52.46 ? H46 P1O 301 E 1 
HETATM 69 H H47 P1O . . . M 2 120.392 111.382 160.735 1 52.46 ? H47 P1O 301 E 1 
HETATM 70 H H48 P1O . . . M 2 121.109 110.355 162.974 1 52.46 ? H48 P1O 301 E 1 
HETATM 71 H H49 P1O . . . M 2 120.173 109.204 162.423 1 52.46 ? H49 P1O 301 E 1 
HETATM 72 H H50 P1O . . . M 2 122.448 108.887 161.868 1 52.46 ? H50 P1O 301 E 1 
HETATM 73 H H51 P1O . . . M 2 122.392 110.205 160.991 1 52.46 ? H51 P1O 301 E 1 
HETATM 74 H H52 P1O . . . M 2 121.197 109.251 159.394 1 52.46 ? H52 P1O 301 E 1 
HETATM 75 H H53 P1O . . . M 2 120.589 108.161 160.373 1 52.46 ? H53 P1O 301 E 1 
HETATM 76 H H54 P1O . . . M 2 122.5 106.92 160.31 1 52.46 ? H54 P1O 301 E 1 
HETATM 77 H H55 P1O . . . M 2 123.303 108.087 159.593 1 52.46 ? H55 P1O 301 E 1 
HETATM 78 H H56 P1O . . . M 2 122.181 107.291 158.8 1 52.46 ? H56 P1O 301 E 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           78 
#