data_9KTM # _model_server_result.job_id KeNkLGDbUzk6mQ2SD_JLVg _model_server_result.datetime_utc '2025-07-27 12:39:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ktm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":301}' # _entry.id 9KTM # _exptl.entry_id 9KTM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 566.728 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9KTM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C28 H57 N O8 P 1' _chem_comp.formula_weight 566.728 _chem_comp.id P1O _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 P1O sing 222 n n O1 H1P P1O sing 223 n n O2 P1 P1O doub 224 n n P1 O3 P1O sing 225 n n P1 O4 P1O sing 226 n n O3 C1 P1O sing 227 n n C1 C2 P1O sing 228 n n C1 H1 P1O sing 229 n n C1 H2 P1O sing 230 n n C2 N1 P1O sing 231 n n C2 H3 P1O sing 232 n n C2 H4 P1O sing 233 n n N1 C3 P1O sing 234 n n N1 C4 P1O sing 235 n n N1 C5 P1O sing 236 n n C3 H5 P1O sing 237 n n C3 H6 P1O sing 238 n n C3 H7 P1O sing 239 n n C4 H8 P1O sing 240 n n C4 H9 P1O sing 241 n n C4 H10 P1O sing 242 n n C5 H11 P1O sing 243 n n C5 H12 P1O sing 244 n n C5 H13 P1O sing 245 n n O4 C6 P1O sing 246 n n C6 C7 P1O sing 247 n n C6 H14 P1O sing 248 n n C6 H15 P1O sing 249 n n C7 C8 P1O sing 250 n n C7 O7 P1O sing 251 n n C7 H16 P1O sing 252 n n C8 O5 P1O sing 253 n n C8 H17 P1O sing 254 n n C8 H18 P1O sing 255 n n O5 C9 P1O sing 256 n n C9 O6 P1O doub 257 n n C9 C10 P1O sing 258 n n C10 C11 P1O sing 259 n n C10 H19 P1O sing 260 n n C10 H20 P1O sing 261 n n C11 C12 P1O sing 262 n n C11 H21 P1O sing 263 n n C11 H22 P1O sing 264 n n C12 C13 P1O sing 265 n n C12 H23 P1O sing 266 n n C12 H24 P1O sing 267 n n C13 C14 P1O sing 268 n n C13 H25 P1O sing 269 n n C13 H26 P1O sing 270 n n C14 C15 P1O sing 271 n n C14 H27 P1O sing 272 n n C14 H28 P1O sing 273 n n C15 C16 P1O sing 274 n n C15 H29 P1O sing 275 n n C15 H30 P1O sing 276 n n C16 C17 P1O sing 277 n n C16 H31 P1O sing 278 n n C16 H32 P1O sing 279 n n C17 C18 P1O sing 280 n n C17 H33 P1O sing 281 n n C17 H34 P1O sing 282 n n C18 H35 P1O sing 283 n n C18 H36 P1O sing 284 n n C18 H37 P1O sing 285 n n O7 C19 P1O sing 286 n n C19 O8 P1O doub 287 n n C19 C20 P1O sing 288 n n C20 C21 P1O sing 289 n n C20 H38 P1O sing 290 n n C20 H39 P1O sing 291 n n C21 C22 P1O sing 292 n n C21 H40 P1O sing 293 n n C21 H41 P1O sing 294 n n C22 C23 P1O sing 295 n n C22 H42 P1O sing 296 n n C22 H43 P1O sing 297 n n C23 C24 P1O sing 298 n n C23 H44 P1O sing 299 n n C23 H45 P1O sing 300 n n C24 C25 P1O sing 301 n n C24 H46 P1O sing 302 n n C24 H47 P1O sing 303 n n C25 C26 P1O sing 304 n n C25 H48 P1O sing 305 n n C25 H49 P1O sing 306 n n C26 C27 P1O sing 307 n n C26 H50 P1O sing 308 n n C26 H51 P1O sing 309 n n C27 C28 P1O sing 310 n n C27 H52 P1O sing 311 n n C27 H53 P1O sing 312 n n C28 H54 P1O sing 313 n n C28 H55 P1O sing 314 n n C28 H56 P1O sing 315 n n # _atom_sites.entry_id 9KTM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 P1O G 1 301 301 P1O P1O . I 2 P1O A 1 301 301 P1O P1O . J 2 P1O B 1 301 301 P1O P1O . K 2 P1O C 1 301 301 P1O P1O . L 2 P1O D 1 301 301 P1O P1O . M 2 P1O E 1 301 301 P1O P1O . N 2 P1O F 1 301 301 P1O P1O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P1O . . . N 2 106.472 134.68 157.544 1 49.51 ? O1 P1O 301 F 1 HETATM 2 O O2 P1O . . . N 2 107.368 132.744 156.054 1 49.51 ? O2 P1O 301 F 1 HETATM 3 P P1 P1O . . . N 2 106.277 133.334 156.904 1 49.51 ? P1 P1O 301 F 1 HETATM 4 O O3 P1O . . . N 2 104.93 133.413 156.032 1 49.51 ? O3 P1O 301 F 1 HETATM 5 C C1 P1O . . . N 2 104.744 132.49 154.926 1 49.51 ? C1 P1O 301 F 1 HETATM 6 C C2 P1O . . . N 2 103.284 132.396 154.557 1 49.51 ? C2 P1O 301 F 1 HETATM 7 N N1 P1O . . . N 2 102.407 131.492 155.403 1 49.51 ? N1 P1O 301 F 1 HETATM 8 C C3 P1O . . . N 2 102.905 130.09 155.381 1 49.51 ? C3 P1O 301 F 1 HETATM 9 C C4 P1O . . . N 2 102.371 131.972 156.805 1 49.51 ? C4 P1O 301 F 1 HETATM 10 C C5 P1O . . . N 2 101.025 131.517 154.863 1 49.51 ? C5 P1O 301 F 1 HETATM 11 O O4 P1O . . . N 2 105.902 132.297 158.072 1 49.51 ? O4 P1O 301 F 1 HETATM 12 C C6 P1O . . . N 2 105.864 130.872 157.79 1 49.51 ? C6 P1O 301 F 1 HETATM 13 C C7 P1O . . . N 2 105.571 130.128 159.069 1 49.51 ? C7 P1O 301 F 1 HETATM 14 C C8 P1O . . . N 2 104.112 129.776 159.246 1 49.51 ? C8 P1O 301 F 1 HETATM 15 O O5 P1O . . . N 2 103.605 130.516 160.377 1 49.51 ? O5 P1O 301 F 1 HETATM 16 C C9 P1O . . . N 2 103.064 131.697 160.106 1 49.51 ? C9 P1O 301 F 1 HETATM 17 O O6 P1O . . . N 2 103.707 132.698 159.938 1 49.51 ? O6 P1O 301 F 1 HETATM 18 C C10 P1O . . . N 2 101.569 131.61 160.04 1 49.51 ? C10 P1O 301 F 1 HETATM 19 C C11 P1O . . . N 2 100.93 131.433 161.38 1 49.51 ? C11 P1O 301 F 1 HETATM 20 C C12 P1O . . . N 2 99.842 132.455 161.653 1 49.51 ? C12 P1O 301 F 1 HETATM 21 C C13 P1O . . . N 2 98.439 131.94 161.442 1 49.51 ? C13 P1O 301 F 1 HETATM 22 O O7 P1O . . . N 2 106.339 128.897 159.091 1 49.51 ? O7 P1O 301 F 1 HETATM 23 C C19 P1O . . . N 2 107.17 128.703 160.124 1 49.51 ? C19 P1O 301 F 1 HETATM 24 O O8 P1O . . . N 2 108.358 128.854 160.024 1 49.51 ? O8 P1O 301 F 1 HETATM 25 C C20 P1O . . . N 2 106.47 128.284 161.384 1 49.51 ? C20 P1O 301 F 1 HETATM 26 C C21 P1O . . . N 2 106.095 126.842 161.397 1 49.51 ? C21 P1O 301 F 1 HETATM 27 C C22 P1O . . . N 2 107.193 125.962 161.962 1 49.51 ? C22 P1O 301 F 1 HETATM 28 C C23 P1O . . . N 2 108.066 125.329 160.916 1 49.51 ? C23 P1O 301 F 1 HETATM 29 C C24 P1O . . . N 2 109.296 124.661 161.466 1 49.51 ? C24 P1O 301 F 1 HETATM 30 C C25 P1O . . . N 2 109.027 123.351 162.154 1 49.51 ? C25 P1O 301 F 1 HETATM 31 C C26 P1O . . . N 2 109.327 122.147 161.309 1 49.51 ? C26 P1O 301 F 1 HETATM 32 C C27 P1O . . . N 2 108.415 122 160.128 1 49.51 ? C27 P1O 301 F 1 HETATM 33 C C28 P1O . . . N 2 108.279 120.576 159.663 1 49.51 ? C28 P1O 301 F 1 HETATM 34 H H1 P1O . . . N 2 105.082 131.599 155.173 1 49.51 ? H1 P1O 301 F 1 HETATM 35 H H2 P1O . . . N 2 105.257 132.803 154.145 1 49.51 ? H2 P1O 301 F 1 HETATM 36 H H3 P1O . . . N 2 103.224 132.089 153.633 1 49.51 ? H3 P1O 301 F 1 HETATM 37 H H4 P1O . . . N 2 102.904 133.294 154.592 1 49.51 ? H4 P1O 301 F 1 HETATM 38 H H5 P1O . . . N 2 102.158 129.489 155.25 1 49.51 ? H5 P1O 301 F 1 HETATM 39 H H6 P1O . . . N 2 103.339 129.895 156.224 1 49.51 ? H6 P1O 301 F 1 HETATM 40 H H7 P1O . . . N 2 103.537 129.989 154.656 1 49.51 ? H7 P1O 301 F 1 HETATM 41 H H8 P1O . . . N 2 102.231 132.93 156.81 1 49.51 ? H8 P1O 301 F 1 HETATM 42 H H9 P1O . . . N 2 101.645 131.529 157.268 1 49.51 ? H9 P1O 301 F 1 HETATM 43 H H10 P1O . . . N 2 103.21 131.759 157.235 1 49.51 ? H10 P1O 301 F 1 HETATM 44 H H11 P1O . . . N 2 101.058 131.377 153.906 1 49.51 ? H11 P1O 301 F 1 HETATM 45 H H12 P1O . . . N 2 100.625 132.378 155.055 1 49.51 ? H12 P1O 301 F 1 HETATM 46 H H13 P1O . . . N 2 100.507 130.813 155.282 1 49.51 ? H13 P1O 301 F 1 HETATM 47 H H14 P1O . . . N 2 106.725 130.579 157.429 1 49.51 ? H14 P1O 301 F 1 HETATM 48 H H15 P1O . . . N 2 105.169 130.682 157.129 1 49.51 ? H15 P1O 301 F 1 HETATM 49 H H16 P1O . . . N 2 105.848 130.696 159.831 1 49.51 ? H16 P1O 301 F 1 HETATM 50 H H17 P1O . . . N 2 104.011 128.811 159.413 1 49.51 ? H17 P1O 301 F 1 HETATM 51 H H18 P1O . . . N 2 103.6 130.012 158.441 1 49.51 ? H18 P1O 301 F 1 HETATM 52 H H19 P1O . . . N 2 101.32 130.857 159.464 1 49.51 ? H19 P1O 301 F 1 HETATM 53 H H20 P1O . . . N 2 101.22 132.426 159.627 1 49.51 ? H20 P1O 301 F 1 HETATM 54 H H21 P1O . . . N 2 101.616 131.506 162.075 1 49.51 ? H21 P1O 301 F 1 HETATM 55 H H22 P1O . . . N 2 100.543 130.533 161.437 1 49.51 ? H22 P1O 301 F 1 HETATM 56 H H23 P1O . . . N 2 99.927 132.764 162.58 1 49.51 ? H23 P1O 301 F 1 HETATM 57 H H24 P1O . . . N 2 99.984 133.229 161.068 1 49.51 ? H24 P1O 301 F 1 HETATM 58 H H25 P1O . . . N 2 98.463 131.229 160.767 1 49.51 ? H25 P1O 301 F 1 HETATM 59 H H26 P1O . . . N 2 98.119 131.546 162.28 1 49.51 ? H26 P1O 301 F 1 HETATM 60 H H38 P1O . . . N 2 105.658 128.823 161.496 1 49.51 ? H38 P1O 301 F 1 HETATM 61 H H39 P1O . . . N 2 107.054 128.468 162.148 1 49.51 ? H39 P1O 301 F 1 HETATM 62 H H40 P1O . . . N 2 105.897 126.55 160.484 1 49.51 ? H40 P1O 301 F 1 HETATM 63 H H41 P1O . . . N 2 105.285 126.72 161.933 1 49.51 ? H41 P1O 301 F 1 HETATM 64 H H42 P1O . . . N 2 106.784 125.252 162.499 1 49.51 ? H42 P1O 301 F 1 HETATM 65 H H43 P1O . . . N 2 107.757 126.499 162.556 1 49.51 ? H43 P1O 301 F 1 HETATM 66 H H44 P1O . . . N 2 108.341 126.019 160.277 1 49.51 ? H44 P1O 301 F 1 HETATM 67 H H45 P1O . . . N 2 107.537 124.665 160.426 1 49.51 ? H45 P1O 301 F 1 HETATM 68 H H46 P1O . . . N 2 109.724 125.269 162.103 1 49.51 ? H46 P1O 301 F 1 HETATM 69 H H47 P1O . . . N 2 109.925 124.505 160.731 1 49.51 ? H47 P1O 301 F 1 HETATM 70 H H48 P1O . . . N 2 109.568 123.305 162.97 1 49.51 ? H48 P1O 301 F 1 HETATM 71 H H49 P1O . . . N 2 108.084 123.32 162.419 1 49.51 ? H49 P1O 301 F 1 HETATM 72 H H50 P1O . . . N 2 109.254 121.343 161.864 1 49.51 ? H50 P1O 301 F 1 HETATM 73 H H51 P1O . . . N 2 110.25 122.207 160.988 1 49.51 ? H51 P1O 301 F 1 HETATM 74 H H52 P1O . . . N 2 108.76 122.547 159.39 1 49.51 ? H52 P1O 301 F 1 HETATM 75 H H53 P1O . . . N 2 107.528 122.344 160.369 1 49.51 ? H53 P1O 301 F 1 HETATM 76 H H54 P1O . . . N 2 107.749 120.076 160.307 1 49.51 ? H54 P1O 301 F 1 HETATM 77 H H55 P1O . . . N 2 109.162 120.175 159.59 1 49.51 ? H55 P1O 301 F 1 HETATM 78 H H56 P1O . . . N 2 107.841 120.557 158.796 1 49.51 ? H56 P1O 301 F 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 78 #