data_9KW0 # _model_server_result.job_id suqq6zkWsdVCRjH6AN7yag _model_server_result.datetime_utc '2025-07-27 22:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9kw0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 9KW0 # _exptl.entry_id 9KW0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.717 _cell.angle_gamma 90 _cell.entry_id 9KW0 _cell.length_a 186.684 _cell.length_b 66.929 _cell.length_c 98.602 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1,2 B,E,H 2 1 C,F,I 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 4_546 -x+1/2,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 73.31812 -33.4645 96.547391 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 306 n n N H TRP sing 307 n n N H2 TRP sing 308 n n CA C TRP sing 309 n n CA CB TRP sing 310 n n CA HA TRP sing 311 n n C O TRP doub 312 n n C OXT TRP sing 313 n n CB CG TRP sing 314 n n CB HB2 TRP sing 315 n n CB HB3 TRP sing 316 n n CG CD1 TRP doub 317 n y CG CD2 TRP sing 318 n y CD1 NE1 TRP sing 319 n y CD1 HD1 TRP sing 320 n n CD2 CE2 TRP doub 321 n y CD2 CE3 TRP sing 322 n y NE1 CE2 TRP sing 323 n y NE1 HE1 TRP sing 324 n n CE2 CZ2 TRP sing 325 n y CE3 CZ3 TRP doub 326 n y CE3 HE3 TRP sing 327 n n CZ2 CH2 TRP doub 328 n y CZ2 HZ2 TRP sing 329 n n CZ3 CH2 TRP sing 330 n y CZ3 HZ3 TRP sing 331 n n CH2 HH2 TRP sing 332 n n OXT HXT TRP sing 333 n n # _atom_sites.entry_id 9KW0 _atom_sites.fract_transf_matrix[1][1] 0.005357 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001111 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 TRP A 1 401 401 TRP TRP . E 2 TRP B 1 401 401 TRP TRP . F 2 TRP C 1 401 401 TRP TRP . G 3 HOH A 1 501 28 HOH HOH . G 3 HOH A 2 502 436 HOH HOH . G 3 HOH A 3 503 5 HOH HOH . G 3 HOH A 4 504 87 HOH HOH . G 3 HOH A 5 505 632 HOH HOH . G 3 HOH A 6 506 116 HOH HOH . G 3 HOH A 7 507 43 HOH HOH . G 3 HOH A 8 508 13 HOH HOH . G 3 HOH A 9 509 15 HOH HOH . G 3 HOH A 10 510 31 HOH HOH . G 3 HOH A 11 511 46 HOH HOH . G 3 HOH A 12 512 894 HOH HOH . G 3 HOH A 13 513 232 HOH HOH . G 3 HOH A 14 514 17 HOH HOH . G 3 HOH A 15 515 105 HOH HOH . G 3 HOH A 16 516 312 HOH HOH . G 3 HOH A 17 517 47 HOH HOH . G 3 HOH A 18 518 103 HOH HOH . G 3 HOH A 19 519 29 HOH HOH . G 3 HOH A 20 520 407 HOH HOH . G 3 HOH A 21 521 529 HOH HOH . G 3 HOH A 22 522 818 HOH HOH . G 3 HOH A 23 523 63 HOH HOH . G 3 HOH A 24 524 121 HOH HOH . G 3 HOH A 25 525 154 HOH HOH . G 3 HOH A 26 526 59 HOH HOH . G 3 HOH A 27 527 48 HOH HOH . G 3 HOH A 28 528 8 HOH HOH . G 3 HOH A 29 529 32 HOH HOH . G 3 HOH A 30 530 115 HOH HOH . G 3 HOH A 31 531 228 HOH HOH . G 3 HOH A 32 532 260 HOH HOH . G 3 HOH A 33 533 12 HOH HOH . G 3 HOH A 34 534 19 HOH HOH . G 3 HOH A 35 535 9 HOH HOH . G 3 HOH A 36 536 101 HOH HOH . G 3 HOH A 37 537 193 HOH HOH . G 3 HOH A 38 538 129 HOH HOH . G 3 HOH A 39 539 262 HOH HOH . G 3 HOH A 40 540 117 HOH HOH . G 3 HOH A 41 541 705 HOH HOH . G 3 HOH A 42 542 35 HOH HOH . G 3 HOH A 43 543 158 HOH HOH . G 3 HOH A 44 544 133 HOH HOH . G 3 HOH A 45 545 91 HOH HOH . G 3 HOH A 46 546 929 HOH HOH . G 3 HOH A 47 547 161 HOH HOH . G 3 HOH A 48 548 18 HOH HOH . G 3 HOH A 49 549 448 HOH HOH . G 3 HOH A 50 550 50 HOH HOH . G 3 HOH A 51 551 4 HOH HOH . G 3 HOH A 52 552 148 HOH HOH . G 3 HOH A 53 553 112 HOH HOH . G 3 HOH A 54 554 174 HOH HOH . G 3 HOH A 55 555 408 HOH HOH . G 3 HOH A 56 556 197 HOH HOH . G 3 HOH A 57 557 95 HOH HOH . G 3 HOH A 58 558 149 HOH HOH . G 3 HOH A 59 559 213 HOH HOH . G 3 HOH A 60 560 152 HOH HOH . G 3 HOH A 61 561 233 HOH HOH . G 3 HOH A 62 562 518 HOH HOH . G 3 HOH A 63 563 22 HOH HOH . G 3 HOH A 64 564 452 HOH HOH . G 3 HOH A 65 565 574 HOH HOH . G 3 HOH A 66 566 377 HOH HOH . G 3 HOH A 67 567 355 HOH HOH . G 3 HOH A 68 568 2 HOH HOH . G 3 HOH A 69 569 563 HOH HOH . G 3 HOH A 70 570 301 HOH HOH . G 3 HOH A 71 571 551 HOH HOH . G 3 HOH A 72 572 142 HOH HOH . G 3 HOH A 73 573 201 HOH HOH . G 3 HOH A 74 574 672 HOH HOH . G 3 HOH A 75 575 136 HOH HOH . G 3 HOH A 76 576 661 HOH HOH . G 3 HOH A 77 577 151 HOH HOH . G 3 HOH A 78 578 630 HOH HOH . G 3 HOH A 79 579 218 HOH HOH . G 3 HOH A 80 580 686 HOH HOH . G 3 HOH A 81 581 67 HOH HOH . G 3 HOH A 82 582 217 HOH HOH . G 3 HOH A 83 583 743 HOH HOH . G 3 HOH A 84 584 320 HOH HOH . G 3 HOH A 85 585 611 HOH HOH . G 3 HOH A 86 586 51 HOH HOH . G 3 HOH A 87 587 598 HOH HOH . G 3 HOH A 88 588 924 HOH HOH . G 3 HOH A 89 589 141 HOH HOH . G 3 HOH A 90 590 486 HOH HOH . G 3 HOH A 91 591 210 HOH HOH . G 3 HOH A 92 592 596 HOH HOH . G 3 HOH A 93 593 917 HOH HOH . G 3 HOH A 94 594 895 HOH HOH . H 3 HOH B 1 501 725 HOH HOH . H 3 HOH B 2 502 137 HOH HOH . H 3 HOH B 3 503 224 HOH HOH . H 3 HOH B 4 504 124 HOH HOH . H 3 HOH B 5 505 565 HOH HOH . H 3 HOH B 6 506 107 HOH HOH . H 3 HOH B 7 507 284 HOH HOH . H 3 HOH B 8 508 53 HOH HOH . H 3 HOH B 9 509 479 HOH HOH . H 3 HOH B 10 510 23 HOH HOH . H 3 HOH B 11 511 937 HOH HOH . H 3 HOH B 12 512 21 HOH HOH . H 3 HOH B 13 513 357 HOH HOH . H 3 HOH B 14 514 7 HOH HOH . H 3 HOH B 15 515 33 HOH HOH . H 3 HOH B 16 516 111 HOH HOH . H 3 HOH B 17 517 62 HOH HOH . H 3 HOH B 18 518 108 HOH HOH . H 3 HOH B 19 519 719 HOH HOH . H 3 HOH B 20 520 166 HOH HOH . H 3 HOH B 21 521 66 HOH HOH . H 3 HOH B 22 522 118 HOH HOH . H 3 HOH B 23 523 25 HOH HOH . H 3 HOH B 24 524 93 HOH HOH . H 3 HOH B 25 525 704 HOH HOH . H 3 HOH B 26 526 216 HOH HOH . H 3 HOH B 27 527 279 HOH HOH . H 3 HOH B 28 528 45 HOH HOH . H 3 HOH B 29 529 182 HOH HOH . H 3 HOH B 30 530 765 HOH HOH . H 3 HOH B 31 531 56 HOH HOH . H 3 HOH B 32 532 39 HOH HOH . H 3 HOH B 33 533 381 HOH HOH . H 3 HOH B 34 534 119 HOH HOH . H 3 HOH B 35 535 781 HOH HOH . H 3 HOH B 36 536 431 HOH HOH . H 3 HOH B 37 537 175 HOH HOH . H 3 HOH B 38 538 206 HOH HOH . H 3 HOH B 39 539 379 HOH HOH . H 3 HOH B 40 540 609 HOH HOH . H 3 HOH B 41 541 257 HOH HOH . H 3 HOH B 42 542 640 HOH HOH . H 3 HOH B 43 543 972 HOH HOH . H 3 HOH B 44 544 171 HOH HOH . H 3 HOH B 45 545 113 HOH HOH . H 3 HOH B 46 546 451 HOH HOH . H 3 HOH B 47 547 269 HOH HOH . H 3 HOH B 48 548 959 HOH HOH . H 3 HOH B 49 549 771 HOH HOH . H 3 HOH B 50 550 755 HOH HOH . I 3 HOH C 1 501 183 HOH HOH . I 3 HOH C 2 502 692 HOH HOH . I 3 HOH C 3 503 544 HOH HOH . I 3 HOH C 4 504 61 HOH HOH . I 3 HOH C 5 505 671 HOH HOH . I 3 HOH C 6 506 230 HOH HOH . I 3 HOH C 7 507 60 HOH HOH . I 3 HOH C 8 508 11 HOH HOH . I 3 HOH C 9 509 316 HOH HOH . I 3 HOH C 10 510 465 HOH HOH . I 3 HOH C 11 511 10 HOH HOH . I 3 HOH C 12 512 424 HOH HOH . I 3 HOH C 13 513 65 HOH HOH . I 3 HOH C 14 514 77 HOH HOH . I 3 HOH C 15 515 37 HOH HOH . I 3 HOH C 16 516 303 HOH HOH . I 3 HOH C 17 517 558 HOH HOH . I 3 HOH C 18 518 58 HOH HOH . I 3 HOH C 19 519 346 HOH HOH . I 3 HOH C 20 520 14 HOH HOH . I 3 HOH C 21 521 432 HOH HOH . I 3 HOH C 22 522 172 HOH HOH . I 3 HOH C 23 523 470 HOH HOH . I 3 HOH C 24 524 288 HOH HOH . I 3 HOH C 25 525 290 HOH HOH . I 3 HOH C 26 526 156 HOH HOH . I 3 HOH C 27 527 874 HOH HOH . I 3 HOH C 28 528 127 HOH HOH . I 3 HOH C 29 529 90 HOH HOH . I 3 HOH C 30 530 20 HOH HOH . I 3 HOH C 31 531 326 HOH HOH . I 3 HOH C 32 532 582 HOH HOH . I 3 HOH C 33 533 184 HOH HOH . I 3 HOH C 34 534 165 HOH HOH . I 3 HOH C 35 535 145 HOH HOH . I 3 HOH C 36 536 170 HOH HOH . I 3 HOH C 37 537 856 HOH HOH . I 3 HOH C 38 538 75 HOH HOH . I 3 HOH C 39 539 6 HOH HOH . I 3 HOH C 40 540 41 HOH HOH . I 3 HOH C 41 541 55 HOH HOH . I 3 HOH C 42 542 110 HOH HOH . I 3 HOH C 43 543 68 HOH HOH . I 3 HOH C 44 544 106 HOH HOH . I 3 HOH C 45 545 656 HOH HOH . I 3 HOH C 46 546 549 HOH HOH . I 3 HOH C 47 547 241 HOH HOH . I 3 HOH C 48 548 716 HOH HOH . I 3 HOH C 49 549 109 HOH HOH . I 3 HOH C 50 550 85 HOH HOH . I 3 HOH C 51 551 584 HOH HOH . I 3 HOH C 52 552 86 HOH HOH . I 3 HOH C 53 553 888 HOH HOH . I 3 HOH C 54 554 157 HOH HOH . I 3 HOH C 55 555 80 HOH HOH . I 3 HOH C 56 556 82 HOH HOH . I 3 HOH C 57 557 36 HOH HOH . I 3 HOH C 58 558 79 HOH HOH . I 3 HOH C 59 559 709 HOH HOH . I 3 HOH C 60 560 134 HOH HOH . I 3 HOH C 61 561 614 HOH HOH . I 3 HOH C 62 562 690 HOH HOH . I 3 HOH C 63 563 562 HOH HOH . I 3 HOH C 64 564 1 HOH HOH . I 3 HOH C 65 565 130 HOH HOH . I 3 HOH C 66 566 438 HOH HOH . I 3 HOH C 67 567 467 HOH HOH . I 3 HOH C 68 568 3 HOH HOH . I 3 HOH C 69 569 179 HOH HOH . I 3 HOH C 70 570 307 HOH HOH . I 3 HOH C 71 571 662 HOH HOH . I 3 HOH C 72 572 214 HOH HOH . I 3 HOH C 73 573 78 HOH HOH . I 3 HOH C 74 574 83 HOH HOH . I 3 HOH C 75 575 590 HOH HOH . I 3 HOH C 76 576 699 HOH HOH . I 3 HOH C 77 577 967 HOH HOH . I 3 HOH C 78 578 589 HOH HOH . I 3 HOH C 79 579 339 HOH HOH . I 3 HOH C 80 580 398 HOH HOH . I 3 HOH C 81 581 259 HOH HOH . I 3 HOH C 82 582 867 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . E 2 15.914 14.259 36.781 1 58.27 ? N TRP 401 B 1 HETATM 2 C CA TRP . . . E 2 15.203 15.191 35.913 1 53.13 ? CA TRP 401 B 1 HETATM 3 C C TRP . . . E 2 16.179 16.177 35.318 1 61.69 ? C TRP 401 B 1 HETATM 4 O O TRP . . . E 2 15.963 16.73 34.23 1 60.96 ? O TRP 401 B 1 HETATM 5 C CB TRP . . . E 2 14.109 15.938 36.677 1 55.63 ? CB TRP 401 B 1 HETATM 6 C CG TRP . . . E 2 13.078 15.038 37.296 1 53.2 ? CG TRP 401 B 1 HETATM 7 C CD1 TRP . . . E 2 12.921 14.735 38.636 1 45.41 ? CD1 TRP 401 B 1 HETATM 8 C CD2 TRP . . . E 2 12.041 14.332 36.596 1 53.01 ? CD2 TRP 401 B 1 HETATM 9 N NE1 TRP . . . E 2 11.849 13.875 38.8 1 45.06 ? NE1 TRP 401 B 1 HETATM 10 C CE2 TRP . . . E 2 11.297 13.611 37.565 1 52.98 ? CE2 TRP 401 B 1 HETATM 11 C CE3 TRP . . . E 2 11.677 14.227 35.246 1 48.03 ? CE3 TRP 401 B 1 HETATM 12 C CZ2 TRP . . . E 2 10.212 12.803 37.213 1 46.86 ? CZ2 TRP 401 B 1 HETATM 13 C CZ3 TRP . . . E 2 10.606 13.43 34.909 1 45.29 ? CZ3 TRP 401 B 1 HETATM 14 C CH2 TRP . . . E 2 9.888 12.726 35.881 1 44.92 ? CH2 TRP 401 B 1 HETATM 15 O OXT TRP . . . E 2 17.207 16.423 35.952 1 67.48 ? OXT TRP 401 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 457 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #