data_9KXM
#
_model_server_result.job_id            q_fyxTgEF8LicuXYZdQk0g 
_model_server_result.datetime_utc      '2025-08-28 09:01:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9kxm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    9KXM 
#
_exptl.entry_id    9KXM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              162.188 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{S})-1-(1~{H}-benzimidazol-2-yl)ethanol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9KXM 
_cell.length_a            69.11 
_cell.length_b            69.11 
_cell.length_c            79.14 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9KXM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H10 N2 O' 
_chem_comp.formula_weight    162.188 
_chem_comp.id                A1ERZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{S})-1-(1~{H}-benzimidazol-2-yl)ethanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C9 A1ERZ doub 1 n y 
C8 C7 A1ERZ sing 2 n y 
C9 C4 A1ERZ sing 3 n y 
C7 C6 A1ERZ doub 4 n y 
C4 N1 A1ERZ sing 5 n y 
C4 C5 A1ERZ doub 6 n y 
N1 C3 A1ERZ sing 7 n y 
C6 C5 A1ERZ sing 8 n y 
C5 N2 A1ERZ sing 9 n y 
C3 N2 A1ERZ doub 10 n y 
C3 C2 A1ERZ sing 11 n n 
O1 C2 A1ERZ sing 12 n n 
C2 C1 A1ERZ sing 13 n n 
N1 H1 A1ERZ sing 14 n n 
C6 H2 A1ERZ sing 15 n n 
C7 H3 A1ERZ sing 16 n n 
C8 H4 A1ERZ sing 17 n n 
C1 H5 A1ERZ sing 18 n n 
C1 H6 A1ERZ sing 19 n n 
C1 H7 A1ERZ sing 20 n n 
C2 H8 A1ERZ sing 21 n n 
C9 H9 A1ERZ sing 22 n n 
O1 H11 A1ERZ sing 23 n n 
#
_atom_sites.entry_id                     9KXM 
_atom_sites.fract_transf_matrix[1][1]    0.01447 
_atom_sites.fract_transf_matrix[1][2]    0.008354 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016708 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012636 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1ERZ A 1 301 301 A1ERZ LIG . 
C 3 PE8 A 1 302 302 PE8 PE8 . 
D 4 SO4 A 1 303 1 SO4 SO4 . 
E 4 SO4 A 1 304 2 SO4 SO4 . 
F 5 HOH A 1 401 107 HOH HOH . 
F 5 HOH A 2 402 36 HOH HOH . 
F 5 HOH A 3 403 61 HOH HOH . 
F 5 HOH A 4 404 104 HOH HOH . 
F 5 HOH A 5 405 71 HOH HOH . 
F 5 HOH A 6 406 108 HOH HOH . 
F 5 HOH A 7 407 75 HOH HOH . 
F 5 HOH A 8 408 1 HOH HOH . 
F 5 HOH A 9 409 38 HOH HOH . 
F 5 HOH A 10 410 65 HOH HOH . 
F 5 HOH A 11 411 54 HOH HOH . 
F 5 HOH A 12 412 51 HOH HOH . 
F 5 HOH A 13 413 17 HOH HOH . 
F 5 HOH A 14 414 37 HOH HOH . 
F 5 HOH A 15 415 10 HOH HOH . 
F 5 HOH A 16 416 83 HOH HOH . 
F 5 HOH A 17 417 8 HOH HOH . 
F 5 HOH A 18 418 9 HOH HOH . 
F 5 HOH A 19 419 23 HOH HOH . 
F 5 HOH A 20 420 5 HOH HOH . 
F 5 HOH A 21 421 28 HOH HOH . 
F 5 HOH A 22 422 78 HOH HOH . 
F 5 HOH A 23 423 24 HOH HOH . 
F 5 HOH A 24 424 22 HOH HOH . 
F 5 HOH A 25 425 48 HOH HOH . 
F 5 HOH A 26 426 55 HOH HOH . 
F 5 HOH A 27 427 20 HOH HOH . 
F 5 HOH A 28 428 27 HOH HOH . 
F 5 HOH A 29 429 12 HOH HOH . 
F 5 HOH A 30 430 58 HOH HOH . 
F 5 HOH A 31 431 15 HOH HOH . 
F 5 HOH A 32 432 85 HOH HOH . 
F 5 HOH A 33 433 6 HOH HOH . 
F 5 HOH A 34 434 25 HOH HOH . 
F 5 HOH A 35 435 110 HOH HOH . 
F 5 HOH A 36 436 4 HOH HOH . 
F 5 HOH A 37 437 46 HOH HOH . 
F 5 HOH A 38 438 86 HOH HOH . 
F 5 HOH A 39 439 2 HOH HOH . 
F 5 HOH A 40 440 70 HOH HOH . 
F 5 HOH A 41 441 73 HOH HOH . 
F 5 HOH A 42 442 98 HOH HOH . 
F 5 HOH A 43 443 11 HOH HOH . 
F 5 HOH A 44 444 111 HOH HOH . 
F 5 HOH A 45 445 99 HOH HOH . 
F 5 HOH A 46 446 77 HOH HOH . 
F 5 HOH A 47 447 101 HOH HOH . 
F 5 HOH A 48 448 93 HOH HOH . 
F 5 HOH A 49 449 29 HOH HOH . 
F 5 HOH A 50 450 94 HOH HOH . 
F 5 HOH A 51 451 72 HOH HOH . 
F 5 HOH A 52 452 40 HOH HOH . 
F 5 HOH A 53 453 41 HOH HOH . 
F 5 HOH A 54 454 64 HOH HOH . 
F 5 HOH A 55 455 68 HOH HOH . 
F 5 HOH A 56 456 57 HOH HOH . 
F 5 HOH A 57 457 19 HOH HOH . 
F 5 HOH A 58 458 18 HOH HOH . 
F 5 HOH A 59 459 32 HOH HOH . 
F 5 HOH A 60 460 63 HOH HOH . 
F 5 HOH A 61 461 56 HOH HOH . 
F 5 HOH A 62 462 7 HOH HOH . 
F 5 HOH A 63 463 3 HOH HOH . 
F 5 HOH A 64 464 88 HOH HOH . 
F 5 HOH A 65 465 39 HOH HOH . 
F 5 HOH A 66 466 66 HOH HOH . 
F 5 HOH A 67 467 35 HOH HOH . 
F 5 HOH A 68 468 26 HOH HOH . 
F 5 HOH A 69 469 43 HOH HOH . 
F 5 HOH A 70 470 52 HOH HOH . 
F 5 HOH A 71 471 109 HOH HOH . 
F 5 HOH A 72 472 74 HOH HOH . 
F 5 HOH A 73 473 87 HOH HOH . 
F 5 HOH A 74 474 50 HOH HOH . 
F 5 HOH A 75 475 42 HOH HOH . 
F 5 HOH A 76 476 47 HOH HOH . 
F 5 HOH A 77 477 103 HOH HOH . 
F 5 HOH A 78 478 34 HOH HOH . 
F 5 HOH A 79 479 14 HOH HOH . 
F 5 HOH A 80 480 81 HOH HOH . 
F 5 HOH A 81 481 30 HOH HOH . 
F 5 HOH A 82 482 16 HOH HOH . 
F 5 HOH A 83 483 80 HOH HOH . 
F 5 HOH A 84 484 105 HOH HOH . 
F 5 HOH A 85 485 79 HOH HOH . 
F 5 HOH A 86 486 69 HOH HOH . 
F 5 HOH A 87 487 82 HOH HOH . 
F 5 HOH A 88 488 45 HOH HOH . 
F 5 HOH A 89 489 92 HOH HOH . 
F 5 HOH A 90 490 21 HOH HOH . 
F 5 HOH A 91 491 90 HOH HOH . 
F 5 HOH A 92 492 44 HOH HOH . 
F 5 HOH A 93 493 102 HOH HOH . 
F 5 HOH A 94 494 89 HOH HOH . 
F 5 HOH A 95 495 76 HOH HOH . 
F 5 HOH A 96 496 95 HOH HOH . 
F 5 HOH A 97 497 33 HOH HOH . 
F 5 HOH A 98 498 91 HOH HOH . 
F 5 HOH A 99 499 84 HOH HOH . 
F 5 HOH A 100 500 59 HOH HOH . 
F 5 HOH A 101 501 100 HOH HOH . 
F 5 HOH A 102 502 13 HOH HOH . 
F 5 HOH A 103 503 31 HOH HOH . 
F 5 HOH A 104 504 67 HOH HOH . 
F 5 HOH A 105 505 112 HOH HOH . 
F 5 HOH A 106 506 60 HOH HOH . 
F 5 HOH A 107 507 97 HOH HOH . 
F 5 HOH A 108 508 49 HOH HOH . 
F 5 HOH A 109 509 53 HOH HOH . 
F 5 HOH A 110 510 114 HOH HOH . 
F 5 HOH A 111 511 62 HOH HOH . 
F 5 HOH A 112 512 106 HOH HOH . 
F 5 HOH A 113 513 96 HOH HOH . 
F 5 HOH A 114 514 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 A1ERZ . . . B 2 -19.611 37.401 19.667 0.74 33.39 ? N1 A1ERZ 301 A 1 
HETATM 2 C C4 A1ERZ . . . B 2 -20.283 38.506 19.146 0.74 34.96 ? C4 A1ERZ 301 A 1 
HETATM 3 C C5 A1ERZ . . . B 2 -20.63 39.364 20.187 0.74 36.17 ? C5 A1ERZ 301 A 1 
HETATM 4 C C6 A1ERZ . . . B 2 -21.309 40.555 19.969 0.74 36.58 ? C6 A1ERZ 301 A 1 
HETATM 5 C C7 A1ERZ . . . B 2 -21.632 40.857 18.663 0.74 36.53 ? C7 A1ERZ 301 A 1 
HETATM 6 C C8 A1ERZ . . . B 2 -21.294 40.004 17.61 0.74 34.55 ? C8 A1ERZ 301 A 1 
HETATM 7 C C1 A1ERZ . . . B 2 -18.292 37.369 23.122 0.74 39.39 ? C1 A1ERZ 301 A 1 
HETATM 8 C C2 A1ERZ . . . B 2 -18.926 36.654 21.95 0.74 41.11 ? C2 A1ERZ 301 A 1 
HETATM 9 C C3 A1ERZ . . . B 2 -19.555 37.596 20.969 0.74 37.07 ? C3 A1ERZ 301 A 1 
HETATM 10 C C9 A1ERZ . . . B 2 -20.618 38.826 17.831 0.74 34.31 ? C9 A1ERZ 301 A 1 
HETATM 11 N N2 A1ERZ . . . B 2 -20.155 38.755 21.33 0.74 35.66 ? N2 A1ERZ 301 A 1 
HETATM 12 O O1 A1ERZ . . . B 2 -17.987 35.84 21.243 0.74 37.96 ? O1 A1ERZ 301 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#