data_9KXM # _model_server_result.job_id g7zKWgodbVAUg6uhWl-LXQ _model_server_result.datetime_utc '2025-08-28 08:58:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9kxm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 9KXM # _exptl.entry_id 9KXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9KXM _cell.length_a 69.11 _cell.length_b 69.11 _cell.length_c 79.14 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9KXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H34 O9' _chem_comp.formula_weight 370.436 _chem_comp.id PE8 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 PE8 sing 260 n n O1 HO1 PE8 sing 261 n n C2 C3 PE8 sing 262 n n C2 H21 PE8 sing 263 n n C2 H22 PE8 sing 264 n n C3 O4 PE8 sing 265 n n C3 H31 PE8 sing 266 n n C3 H32 PE8 sing 267 n n O4 C5 PE8 sing 268 n n C5 C6 PE8 sing 269 n n C5 H51 PE8 sing 270 n n C5 H52 PE8 sing 271 n n C6 O7 PE8 sing 272 n n C6 H61 PE8 sing 273 n n C6 H62 PE8 sing 274 n n O7 C8 PE8 sing 275 n n C8 C9 PE8 sing 276 n n C8 H81 PE8 sing 277 n n C8 H82 PE8 sing 278 n n C9 O10 PE8 sing 279 n n C9 H91 PE8 sing 280 n n C9 H92 PE8 sing 281 n n O10 C11 PE8 sing 282 n n C11 C12 PE8 sing 283 n n C11 H111 PE8 sing 284 n n C11 H112 PE8 sing 285 n n C12 O13 PE8 sing 286 n n C12 H121 PE8 sing 287 n n C12 H122 PE8 sing 288 n n O13 C14 PE8 sing 289 n n C14 C15 PE8 sing 290 n n C14 H141 PE8 sing 291 n n C14 H142 PE8 sing 292 n n C15 O16 PE8 sing 293 n n C15 H151 PE8 sing 294 n n C15 H152 PE8 sing 295 n n O16 C17 PE8 sing 296 n n C17 C18 PE8 sing 297 n n C17 H171 PE8 sing 298 n n C17 H172 PE8 sing 299 n n C18 O19 PE8 sing 300 n n C18 H181 PE8 sing 301 n n C18 H182 PE8 sing 302 n n O19 C20 PE8 sing 303 n n C20 C21 PE8 sing 304 n n C20 H201 PE8 sing 305 n n C20 H202 PE8 sing 306 n n C21 O22 PE8 sing 307 n n C21 H211 PE8 sing 308 n n C21 H212 PE8 sing 309 n n O22 C23 PE8 sing 310 n n C23 C24 PE8 sing 311 n n C23 H231 PE8 sing 312 n n C23 H232 PE8 sing 313 n n C24 O25 PE8 sing 314 n n C24 H241 PE8 sing 315 n n C24 H242 PE8 sing 316 n n O25 H25 PE8 sing 317 n n # _atom_sites.entry_id 9KXM _atom_sites.fract_transf_matrix[1][1] 0.01447 _atom_sites.fract_transf_matrix[1][2] 0.008354 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1ERZ A 1 301 301 A1ERZ LIG . C 3 PE8 A 1 302 302 PE8 PE8 . D 4 SO4 A 1 303 1 SO4 SO4 . E 4 SO4 A 1 304 2 SO4 SO4 . F 5 HOH A 1 401 107 HOH HOH . F 5 HOH A 2 402 36 HOH HOH . F 5 HOH A 3 403 61 HOH HOH . F 5 HOH A 4 404 104 HOH HOH . F 5 HOH A 5 405 71 HOH HOH . F 5 HOH A 6 406 108 HOH HOH . F 5 HOH A 7 407 75 HOH HOH . F 5 HOH A 8 408 1 HOH HOH . F 5 HOH A 9 409 38 HOH HOH . F 5 HOH A 10 410 65 HOH HOH . F 5 HOH A 11 411 54 HOH HOH . F 5 HOH A 12 412 51 HOH HOH . F 5 HOH A 13 413 17 HOH HOH . F 5 HOH A 14 414 37 HOH HOH . F 5 HOH A 15 415 10 HOH HOH . F 5 HOH A 16 416 83 HOH HOH . F 5 HOH A 17 417 8 HOH HOH . F 5 HOH A 18 418 9 HOH HOH . F 5 HOH A 19 419 23 HOH HOH . F 5 HOH A 20 420 5 HOH HOH . F 5 HOH A 21 421 28 HOH HOH . F 5 HOH A 22 422 78 HOH HOH . F 5 HOH A 23 423 24 HOH HOH . F 5 HOH A 24 424 22 HOH HOH . F 5 HOH A 25 425 48 HOH HOH . F 5 HOH A 26 426 55 HOH HOH . F 5 HOH A 27 427 20 HOH HOH . F 5 HOH A 28 428 27 HOH HOH . F 5 HOH A 29 429 12 HOH HOH . F 5 HOH A 30 430 58 HOH HOH . F 5 HOH A 31 431 15 HOH HOH . F 5 HOH A 32 432 85 HOH HOH . F 5 HOH A 33 433 6 HOH HOH . F 5 HOH A 34 434 25 HOH HOH . F 5 HOH A 35 435 110 HOH HOH . F 5 HOH A 36 436 4 HOH HOH . F 5 HOH A 37 437 46 HOH HOH . F 5 HOH A 38 438 86 HOH HOH . F 5 HOH A 39 439 2 HOH HOH . F 5 HOH A 40 440 70 HOH HOH . F 5 HOH A 41 441 73 HOH HOH . F 5 HOH A 42 442 98 HOH HOH . F 5 HOH A 43 443 11 HOH HOH . F 5 HOH A 44 444 111 HOH HOH . F 5 HOH A 45 445 99 HOH HOH . F 5 HOH A 46 446 77 HOH HOH . F 5 HOH A 47 447 101 HOH HOH . F 5 HOH A 48 448 93 HOH HOH . F 5 HOH A 49 449 29 HOH HOH . F 5 HOH A 50 450 94 HOH HOH . F 5 HOH A 51 451 72 HOH HOH . F 5 HOH A 52 452 40 HOH HOH . F 5 HOH A 53 453 41 HOH HOH . F 5 HOH A 54 454 64 HOH HOH . F 5 HOH A 55 455 68 HOH HOH . F 5 HOH A 56 456 57 HOH HOH . F 5 HOH A 57 457 19 HOH HOH . F 5 HOH A 58 458 18 HOH HOH . F 5 HOH A 59 459 32 HOH HOH . F 5 HOH A 60 460 63 HOH HOH . F 5 HOH A 61 461 56 HOH HOH . F 5 HOH A 62 462 7 HOH HOH . F 5 HOH A 63 463 3 HOH HOH . F 5 HOH A 64 464 88 HOH HOH . F 5 HOH A 65 465 39 HOH HOH . F 5 HOH A 66 466 66 HOH HOH . F 5 HOH A 67 467 35 HOH HOH . F 5 HOH A 68 468 26 HOH HOH . F 5 HOH A 69 469 43 HOH HOH . F 5 HOH A 70 470 52 HOH HOH . F 5 HOH A 71 471 109 HOH HOH . F 5 HOH A 72 472 74 HOH HOH . F 5 HOH A 73 473 87 HOH HOH . F 5 HOH A 74 474 50 HOH HOH . F 5 HOH A 75 475 42 HOH HOH . F 5 HOH A 76 476 47 HOH HOH . F 5 HOH A 77 477 103 HOH HOH . F 5 HOH A 78 478 34 HOH HOH . F 5 HOH A 79 479 14 HOH HOH . F 5 HOH A 80 480 81 HOH HOH . F 5 HOH A 81 481 30 HOH HOH . F 5 HOH A 82 482 16 HOH HOH . F 5 HOH A 83 483 80 HOH HOH . F 5 HOH A 84 484 105 HOH HOH . F 5 HOH A 85 485 79 HOH HOH . F 5 HOH A 86 486 69 HOH HOH . F 5 HOH A 87 487 82 HOH HOH . F 5 HOH A 88 488 45 HOH HOH . F 5 HOH A 89 489 92 HOH HOH . F 5 HOH A 90 490 21 HOH HOH . F 5 HOH A 91 491 90 HOH HOH . F 5 HOH A 92 492 44 HOH HOH . F 5 HOH A 93 493 102 HOH HOH . F 5 HOH A 94 494 89 HOH HOH . F 5 HOH A 95 495 76 HOH HOH . F 5 HOH A 96 496 95 HOH HOH . F 5 HOH A 97 497 33 HOH HOH . F 5 HOH A 98 498 91 HOH HOH . F 5 HOH A 99 499 84 HOH HOH . F 5 HOH A 100 500 59 HOH HOH . F 5 HOH A 101 501 100 HOH HOH . F 5 HOH A 102 502 13 HOH HOH . F 5 HOH A 103 503 31 HOH HOH . F 5 HOH A 104 504 67 HOH HOH . F 5 HOH A 105 505 112 HOH HOH . F 5 HOH A 106 506 60 HOH HOH . F 5 HOH A 107 507 97 HOH HOH . F 5 HOH A 108 508 49 HOH HOH . F 5 HOH A 109 509 53 HOH HOH . F 5 HOH A 110 510 114 HOH HOH . F 5 HOH A 111 511 62 HOH HOH . F 5 HOH A 112 512 106 HOH HOH . F 5 HOH A 113 513 96 HOH HOH . F 5 HOH A 114 514 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PE8 . . . C 3 -21.425 25.056 9.255 1 27.7 ? O1 PE8 302 A 1 HETATM 2 C C2 PE8 . . . C 3 -22.822 25.305 9.172 1 28.45 ? C2 PE8 302 A 1 HETATM 3 C C3 PE8 . . . C 3 -23.15 26.2 8.026 1 30.99 ? C3 PE8 302 A 1 HETATM 4 O O4 PE8 . . . C 3 -22.483 27.447 8.2 1 30.87 ? O4 PE8 302 A 1 HETATM 5 C C5 PE8 . . . C 3 -22.766 28.374 7.158 1 31.5 ? C5 PE8 302 A 1 HETATM 6 C C6 PE8 . . . C 3 -22.218 29.724 7.529 1 31.25 ? C6 PE8 302 A 1 HETATM 7 O O7 PE8 . . . C 3 -20.841 29.609 7.865 1 29.1 ? O7 PE8 302 A 1 HETATM 8 C C8 PE8 . . . C 3 -20.207 30.885 7.962 1 27.44 ? C8 PE8 302 A 1 HETATM 9 C C9 PE8 . . . C 3 -18.751 30.686 8.236 1 29.94 ? C9 PE8 302 A 1 HETATM 10 O O10 PE8 . . . C 3 -18.201 29.92 7.174 1 29.75 ? O10 PE8 302 A 1 HETATM 11 C C11 PE8 . . . C 3 -16.809 29.668 7.333 1 32.12 ? C11 PE8 302 A 1 HETATM 12 C C12 PE8 . . . C 3 -16.314 28.876 6.16 1 27.62 ? C12 PE8 302 A 1 HETATM 13 O O13 PE8 . . . C 3 -16.66 29.54 4.949 1 32.54 ? O13 PE8 302 A 1 HETATM 14 C C14 PE8 . . . C 3 -16.181 28.848 3.802 1 31.86 ? C14 PE8 302 A 1 HETATM 15 C C15 PE8 . . . C 3 -16.86 29.35 2.573 1 32.84 ? C15 PE8 302 A 1 HETATM 16 O O16 PE8 . . . C 3 -18.264 29.157 2.697 1 37.93 ? O16 PE8 302 A 1 HETATM 17 C C17 PE8 . . . C 3 -18.964 29.409 1.483 1 38 ? C17 PE8 302 A 1 HETATM 18 C C18 PE8 . . . C 3 -20.336 29.933 1.784 1 45.64 ? C18 PE8 302 A 1 HETATM 19 O O19 PE8 . . . C 3 -21.321 28.918 1.624 1 46.85 ? O19 PE8 302 A 1 HETATM 20 C C20 PE8 . . . C 3 -21.929 28.518 2.848 1 43.75 ? C20 PE8 302 A 1 HETATM 21 C C21 PE8 . . . C 3 -22.403 29.713 3.624 1 43.31 ? C21 PE8 302 A 1 HETATM 22 O O22 PE8 . . . C 3 -23.523 30.327 2.996 1 48.6 ? O22 PE8 302 A 1 HETATM 23 C C23 PE8 . . . C 3 -24.766 29.809 3.455 1 45.48 ? C23 PE8 302 A 1 HETATM 24 C C24 PE8 . . . C 3 -25.887 30.696 3.008 1 46.23 ? C24 PE8 302 A 1 HETATM 25 O O25 PE8 . . . C 3 -25.845 31.967 3.632 1 48.08 ? O25 PE8 302 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #